Wall clock time and date at job start Tue Mar 31 2020 06:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21577 * 120.00299 * 359.97438 * 13 12 2 15 15 C 1.47623 * 120.00036 * 180.02562 * 13 12 2 16 16 C 1.40283 * 120.49979 * 180.02562 * 15 13 12 17 17 C 1.37953 * 118.35391 * 179.97438 * 16 15 13 18 18 C 1.39167 * 119.26753 * 0.02562 * 17 16 15 19 19 O 1.35493 * 119.52399 * 179.97438 * 18 17 16 20 20 C 1.42908 * 116.99892 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47273 * 179.97438 * 20 19 18 22 22 C 1.52995 * 117.49659 * 243.74778 * 21 20 19 23 23 C 1.52995 * 117.50002 * 175.08515 * 21 20 19 24 24 N 1.32409 * 120.94503 * 359.97438 * 18 17 16 25 25 C 1.31661 * 121.80060 * 359.70196 * 24 18 17 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 31 31 H 1.07998 * 120.81798 * 0.02562 * 16 15 13 32 32 H 1.07998 * 120.36217 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.46558 * 299.99977 * 20 19 18 34 34 H 1.08997 * 109.47117 * 59.99374 * 20 19 18 35 35 H 1.09003 * 115.54713 * 29.41108 * 21 20 19 36 36 H 1.09002 * 117.50228 * 359.97438 * 22 21 20 37 37 H 1.09001 * 117.50225 * 145.01912 * 22 21 20 38 38 H 1.09001 * 117.49784 * 214.97563 * 23 21 20 39 39 H 1.09005 * 117.49546 * 359.97438 * 23 21 20 40 40 H 1.08004 * 119.68791 * 180.29099 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8583 1.1617 2.4116 15 6 2.6396 -0.7138 3.5624 16 6 2.7771 -0.0242 4.7763 17 6 3.2408 -0.7178 5.8749 18 6 3.5551 -2.0672 5.7446 19 8 4.0115 -2.7533 6.8202 20 6 4.3171 -4.1358 6.6259 21 6 4.8150 -4.7378 7.9414 22 6 6.2547 -5.2538 7.9819 23 6 5.0867 -6.2432 7.9712 24 7 3.4145 -2.6902 4.5847 25 6 2.9695 -2.0685 3.5128 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1611 -3.4845 30 1 2.2490 -1.6316 1.1527 31 1 2.5252 1.0235 4.8491 32 1 3.3594 -0.2188 6.8253 33 1 3.4207 -4.6637 6.3005 34 1 5.0922 -4.2332 5.8658 35 1 4.4187 -4.2798 8.8477 36 1 6.8472 -5.1647 7.0713 37 1 6.8056 -5.1357 8.9150 38 1 4.8697 -6.7755 8.8973 39 1 4.9104 -6.8047 7.0537 40 1 2.8636 -2.6112 2.5850 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066642334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:31 Heat of formation + Delta-G solvation = -38.152022 kcal Electronic energy + Delta-G solvation = -21887.378903 eV Core-core repulsion = 18474.454114 eV Total energy + Delta-G solvation = -3412.924789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92091 -40.53364 -39.14702 -37.64995 -36.75872 -34.43462 -33.62960 -32.35577 -30.45396 -28.54781 -27.33230 -25.40522 -24.60846 -23.28132 -22.90679 -21.66271 -21.35795 -19.76197 -19.35159 -18.18816 -17.75504 -17.30261 -17.00501 -16.43219 -16.14850 -15.90485 -15.69454 -15.29790 -14.98896 -14.49920 -14.42795 -14.31543 -14.17946 -13.81367 -13.63489 -12.99951 -12.88029 -12.74244 -12.60015 -12.37308 -12.26393 -12.24701 -12.15389 -11.43875 -11.19458 -11.10213 -11.07475 -10.94749 -10.66482 -10.55839 -9.91238 -9.56907 -8.16618 -6.34159 -0.35489 0.09750 1.46742 1.48619 1.56316 1.79152 1.88999 2.32235 2.54825 2.77234 2.83953 3.08550 3.14059 3.68433 3.72131 3.81752 3.91112 3.96507 4.03186 4.19508 4.23707 4.46183 4.56296 4.58246 4.70413 4.77684 4.78743 4.93186 5.00235 5.05849 5.10288 5.13737 5.23316 5.28895 5.43204 5.58448 5.68196 5.89274 6.08282 6.09490 6.58769 6.72125 6.88691 7.30536 7.46824 8.89561 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.002922 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.616329 B = 9581.214502 C =10544.394235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.287 1.287 10 H -0.271 1.271 11 H -0.263 1.263 12 N -0.698 5.698 13 C 0.552 3.448 14 O -0.594 6.594 15 C -0.230 4.230 16 C 0.011 3.989 17 C -0.187 4.187 18 C 0.333 3.667 19 O -0.302 6.302 20 C 0.099 3.901 21 C -0.172 4.172 22 C -0.177 4.177 23 C -0.159 4.159 24 N -0.550 5.550 25 C 0.183 3.817 26 H 0.013 0.987 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.404 0.596 31 H 0.156 0.844 32 H 0.175 0.825 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.804 -13.177 20.166 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.020 0.980 4 C -0.587 4.587 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.213 1.213 10 H -0.196 1.196 11 H -0.188 1.188 12 N -0.346 5.346 13 C 0.340 3.660 14 O -0.477 6.477 15 C -0.236 4.236 16 C -0.014 4.014 17 C -0.208 4.208 18 C 0.154 3.846 19 O -0.209 6.209 20 C 0.024 3.976 21 C -0.191 4.191 22 C -0.214 4.214 23 C -0.196 4.196 24 N -0.274 5.274 25 C 0.026 3.974 26 H 0.032 0.968 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.240 0.760 31 H 0.174 0.826 32 H 0.193 0.807 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.135 0.865 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.789 -13.061 20.279 25.348 hybrid contribution -0.095 0.420 -1.191 1.266 sum 7.693 -12.641 19.088 24.153 Atomic orbital electron populations 1.21912 0.98107 0.99621 0.99724 1.18400 0.91255 0.92047 0.81540 0.98025 1.21509 1.32758 1.13707 0.90679 0.90666 1.25795 0.94846 0.95579 1.02302 1.70045 1.36849 1.23875 1.24701 0.85392 0.78625 0.78739 0.77550 1.21265 1.19611 1.18798 1.46208 1.64712 1.14171 1.09542 1.18416 0.77629 0.86238 0.83733 1.90707 1.53639 1.17573 1.85800 1.20824 1.10730 0.96633 0.95382 1.21652 0.89283 1.00944 0.89540 1.21224 1.06063 0.91684 1.01779 1.20270 0.89071 0.89684 0.85569 1.86179 1.77930 1.25726 1.31058 1.22302 1.00736 0.77504 0.97011 1.22146 1.00997 0.98028 0.97887 1.23208 0.90571 1.03349 1.04224 1.23107 1.01618 0.90207 1.04680 1.67382 1.20465 1.39891 0.99627 1.22849 0.88463 0.89996 0.96139 0.96809 0.91307 0.93954 0.92515 0.75981 0.82609 0.80745 0.91129 0.91508 0.86535 0.88613 0.87396 0.86798 0.88045 0.80155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.27 13.99 2.56 44.24 0.11 14.10 16 3 H 0.00 0.11 7.58 -2.38 -0.02 0.09 16 4 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.02 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -52.21 11.32 21.45 0.24 -51.97 16 8 Si 0.97 41.55 29.54 68.60 2.03 43.57 16 9 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 12 N -0.70 -28.97 5.02 -449.19 -2.26 -31.23 16 13 C 0.55 22.58 7.74 86.72 0.67 23.25 16 14 O -0.59 -29.25 16.08 -3.96 -0.06 -29.31 16 15 C -0.23 -7.18 5.89 -19.99 -0.12 -7.29 16 16 C 0.01 0.31 9.70 22.70 0.22 0.53 16 17 C -0.19 -4.18 10.02 22.43 0.22 -3.96 16 18 C 0.33 8.08 7.49 84.83 0.64 8.72 16 19 O -0.30 -6.61 10.10 -87.93 -0.89 -7.49 16 20 C 0.10 1.79 5.58 71.98 0.40 2.19 16 21 C -0.17 -2.38 6.05 -10.80 -0.07 -2.44 16 22 C -0.18 -2.01 10.18 30.62 0.31 -1.69 16 23 C -0.16 -1.63 10.25 30.62 0.31 -1.32 16 24 N -0.55 -14.16 9.18 -307.82 -2.82 -16.98 16 25 C 0.18 4.88 10.71 85.03 0.91 5.79 16 26 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 28 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.40 13.84 6.59 -92.71 -0.61 13.23 16 31 H 0.16 4.09 7.73 -2.91 -0.02 4.07 16 32 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.07 1.24 7.83 -2.39 -0.02 1.23 16 35 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.12 8.03 -2.39 -0.02 1.10 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.18 4.06 6.41 -2.91 -0.02 4.04 16 Total: -1.00 -66.89 343.33 1.64 -65.25 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.45 Total: 23.65 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.96 Total: 4.52 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.84 Total: -100.18 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.95 Total: -36.81 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -66.89 1.64 -65.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066642334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.095 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds