Wall clock time and date at job start Tue Mar 31 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47145 * 2 1 4 4 O 1.21285 * 119.99566 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99981 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99786 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47413 * 325.00452 * 6 5 3 8 8 C 1.50693 * 109.47379 * 205.00224 * 6 5 3 9 9 O 1.21296 * 120.00000 * 334.61563 * 8 6 5 10 10 N 1.34771 * 120.00295 * 154.61291 * 8 6 5 11 11 C 1.46496 * 119.99749 * 6.02128 * 10 8 6 12 12 C 1.37099 * 120.00397 * 186.01800 * 10 8 6 13 13 H 1.08002 * 119.99810 * 322.35004 * 12 10 8 14 14 C 1.38944 * 120.00199 * 142.34497 * 12 10 8 15 15 N 1.31418 * 119.99919 * 161.11107 * 14 12 10 16 16 Si 1.86795 * 120.00023 * 341.10627 * 14 12 10 17 17 H 1.48497 * 109.47297 * 92.47710 * 16 14 12 18 18 H 1.48505 * 109.47502 * 212.47776 * 16 14 12 19 19 H 1.48500 * 109.47449 * 332.47850 * 16 14 12 20 20 C 1.50700 * 109.46719 * 85.00273 * 6 5 3 21 21 C 1.38235 * 120.00180 * 225.76293 * 20 6 5 22 22 C 1.38233 * 120.00123 * 179.97438 * 21 20 6 23 23 C 1.38232 * 120.00218 * 359.96347 * 22 21 20 24 24 C 1.38232 * 119.99688 * 359.97438 * 23 22 21 25 25 C 1.38231 * 120.00291 * 0.07433 * 24 23 22 26 26 H 1.09002 * 109.47055 * 299.99874 * 1 2 3 27 27 H 1.08997 * 109.47327 * 59.99580 * 1 2 3 28 28 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47055 * 240.00126 * 2 1 3 30 30 H 1.08998 * 109.47054 * 119.99945 * 2 1 3 31 31 H 0.96995 * 119.99909 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.47687 * 85.82702 * 11 10 8 33 33 H 1.09011 * 109.46958 * 205.82376 * 11 10 8 34 34 H 1.09000 * 109.47601 * 325.82299 * 11 10 8 35 35 H 0.97003 * 119.99489 * 180.02562 * 15 14 12 36 36 H 1.08008 * 120.00010 * 359.97438 * 21 20 6 37 37 H 1.08003 * 119.99621 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.00292 * 179.72015 * 23 22 21 39 39 H 1.08006 * 119.99687 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00287 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0484 0.0000 7 1 3.1734 3.6712 -0.5901 8 6 5.2274 3.0925 -0.5999 9 8 5.9349 2.1078 -0.5662 10 7 5.6771 4.2260 -1.1738 11 6 4.8781 5.4516 -1.0990 12 6 6.8821 4.2321 -1.8275 13 1 7.7107 3.6591 -1.4380 14 6 7.0375 4.9752 -2.9912 15 7 8.2413 5.2902 -3.4139 16 14 5.5353 5.5266 -3.9548 17 1 5.1267 6.8807 -3.5027 18 1 5.8630 5.5661 -5.4027 19 1 4.4218 4.5712 -3.7253 20 6 3.8957 3.5640 1.4151 21 6 3.3985 4.8194 1.7114 22 6 3.4439 5.2921 3.0096 23 6 3.9858 4.5092 4.0117 24 6 4.4817 3.2533 3.7157 25 6 4.4373 2.7810 2.4174 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9877 0.9299 0.0005 32 1 5.1000 5.9739 -0.1683 33 1 5.1213 6.0960 -1.9440 34 1 3.8187 5.1973 -1.1291 35 1 8.3497 5.8093 -4.2261 36 1 2.9746 5.4309 0.9285 37 1 3.0558 6.2731 3.2409 38 1 4.0253 4.8803 5.0252 39 1 4.9055 2.6418 4.4986 40 1 4.8252 1.7999 2.1860 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066644054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:42 Heat of formation + Delta-G solvation = -31.039588 kcal Electronic energy + Delta-G solvation = -23704.054306 eV Core-core repulsion = 20291.437935 eV Total energy + Delta-G solvation = -3412.616371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33866 -38.84021 -38.24399 -35.21110 -34.34056 -32.85770 -32.17057 -31.06139 -30.67667 -27.43470 -26.55305 -24.90503 -23.66720 -22.41810 -21.58640 -20.01181 -19.14810 -17.36266 -17.13290 -16.98020 -16.05149 -15.67588 -15.58215 -15.38281 -15.10791 -14.40326 -14.14700 -13.98460 -13.47673 -13.24747 -13.02568 -12.74244 -12.62085 -12.56353 -12.29391 -12.28630 -12.02751 -11.79173 -11.68249 -11.21857 -11.09546 -10.88931 -10.81445 -10.37160 -9.98444 -9.76664 -9.33401 -9.11350 -8.82455 -8.70459 -8.31385 -7.85622 -6.46890 -4.07417 1.47795 1.59503 2.77169 2.96625 3.15019 3.20332 3.23450 3.56362 3.94142 4.06917 4.40769 4.80077 4.87924 4.98858 5.01984 5.05837 5.08519 5.15072 5.28530 5.39035 5.42478 5.55636 5.69443 5.71878 5.72979 5.82469 5.88198 6.03823 6.10475 6.14915 6.20351 6.23741 6.52139 6.61069 6.65467 6.80744 7.15437 7.42635 7.70713 8.15393 8.33813 8.41272 8.81349 9.19978 9.57670 10.64429 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.006342 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.845178 B = 4413.829352 C = 5495.701117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.544 6.544 5 N -0.706 5.706 6 C 0.165 3.835 7 H 0.107 0.893 8 C 0.466 3.534 9 O -0.560 6.560 10 N -0.456 5.456 11 C 0.054 3.946 12 C -0.318 4.318 13 H 0.109 0.891 14 C 0.061 3.939 15 N -0.861 5.861 16 Si 0.881 3.119 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.265 1.265 20 C -0.082 4.082 21 C -0.101 4.101 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.095 4.095 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.410 0.590 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.276 0.724 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 -4.259 9.969 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.421 6.421 5 N -0.359 5.359 6 C 0.056 3.944 7 H 0.125 0.875 8 C 0.253 3.747 9 O -0.442 6.442 10 N -0.177 5.177 11 C -0.090 4.090 12 C -0.445 4.445 13 H 0.126 0.874 14 C -0.146 4.146 15 N -0.497 5.497 16 Si 0.709 3.291 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.083 4.083 21 C -0.120 4.120 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.114 4.114 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.247 0.753 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.642 -3.993 9.798 16.485 hybrid contribution -0.272 0.210 -0.644 0.730 sum -12.914 -3.783 9.154 16.275 Atomic orbital electron populations 1.21511 0.93113 1.01319 1.03307 1.21614 0.98458 0.93773 1.04474 1.20779 0.81855 0.91930 0.75532 1.90674 1.55260 1.46513 1.49660 1.45794 1.07316 1.08039 1.74777 1.19743 0.96539 0.84537 0.93588 0.87546 1.19907 0.87186 0.83841 0.83789 1.90540 1.57459 1.34714 1.61494 1.43533 1.19202 1.05918 1.48998 1.22243 0.94864 0.89303 1.02540 1.19078 0.87467 1.31746 1.06246 0.87360 1.25357 0.96707 0.96141 0.96352 1.69722 1.21650 1.35136 1.23178 0.86941 0.83696 0.78857 0.79586 1.19965 1.21308 1.18895 1.19912 0.98932 0.95044 0.94460 1.21039 0.98853 0.95234 0.96880 1.21054 1.00286 0.99740 0.92886 1.21096 0.99231 0.94706 0.99042 1.21075 1.00380 0.96328 0.96375 1.20954 0.97975 0.99942 0.92492 0.92066 0.92010 0.92249 0.88801 0.88926 0.75307 0.92269 0.91293 0.92496 0.91397 0.85937 0.86098 0.86379 0.86253 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.20 37.16 0.34 -1.03 16 2 C -0.14 -1.52 6.42 -27.88 -0.18 -1.70 16 3 C 0.51 7.79 7.79 -10.98 -0.09 7.70 16 4 O -0.54 -9.96 15.65 5.55 0.09 -9.87 16 5 N -0.71 -11.43 4.52 -56.07 -0.25 -11.69 16 6 C 0.16 3.06 1.87 -70.24 -0.13 2.93 16 7 H 0.11 2.01 5.47 -51.93 -0.28 1.73 16 8 C 0.47 10.63 6.73 -10.99 -0.07 10.56 16 9 O -0.56 -14.18 15.86 5.54 0.09 -14.09 16 10 N -0.46 -11.01 2.59 -122.20 -0.32 -11.33 16 11 C 0.05 1.08 7.87 59.84 0.47 1.55 16 12 C -0.32 -8.93 9.43 -14.93 -0.14 -9.07 16 13 H 0.11 3.40 7.86 -52.49 -0.41 2.99 16 14 C 0.06 1.66 5.34 -17.47 -0.09 1.57 16 15 N -0.86 -24.60 13.96 55.50 0.77 -23.83 16 16 Si 0.88 20.43 24.91 -169.99 -4.23 16.20 16 17 H -0.27 -5.85 6.58 56.52 0.37 -5.47 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 20 C -0.08 -1.39 4.77 -104.62 -0.50 -1.89 16 21 C -0.10 -1.57 8.64 -39.58 -0.34 -1.91 16 22 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 23 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 24 C -0.12 -1.70 10.05 -39.59 -0.40 -2.09 16 25 C -0.10 -1.52 9.27 -39.58 -0.37 -1.89 16 26 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.41 6.23 7.79 -40.82 -0.32 5.92 16 32 H 0.06 1.07 7.75 -51.93 -0.40 0.67 16 33 H 0.07 1.45 3.15 -51.92 -0.16 1.28 16 34 H 0.06 1.00 5.44 -51.93 -0.28 0.71 16 35 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.12 1.74 7.17 -52.48 -0.38 1.36 16 37 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.90 7.90 -52.49 -0.41 1.49 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -32.96 331.37 -6.35 -39.31 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.20 Total: 9.58 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.29 Total: 0.73 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.20 Total: -46.85 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.17 Total: -23.96 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.23 Total: 16.20 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.96 -6.35 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.273 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds