Wall clock time and date at job start Tue Mar 31 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47145 * 2 1 4 4 O 1.21285 * 119.99566 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99981 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99786 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47413 * 325.00452 * 6 5 3 8 8 C 1.50693 * 109.47379 * 205.00224 * 6 5 3 9 9 O 1.21296 * 120.00000 * 334.61563 * 8 6 5 10 10 N 1.34771 * 120.00295 * 154.61291 * 8 6 5 11 11 C 1.46496 * 119.99749 * 6.02128 * 10 8 6 12 12 C 1.37099 * 120.00397 * 186.01800 * 10 8 6 13 13 H 1.08002 * 119.99810 * 322.35004 * 12 10 8 14 14 C 1.38944 * 120.00199 * 142.34497 * 12 10 8 15 15 N 1.31418 * 119.99919 * 161.11107 * 14 12 10 16 16 Si 1.86795 * 120.00023 * 341.10627 * 14 12 10 17 17 H 1.48497 * 109.47297 * 92.47710 * 16 14 12 18 18 H 1.48505 * 109.47502 * 212.47776 * 16 14 12 19 19 H 1.48500 * 109.47449 * 332.47850 * 16 14 12 20 20 C 1.50700 * 109.46719 * 85.00273 * 6 5 3 21 21 C 1.38235 * 120.00180 * 225.76293 * 20 6 5 22 22 C 1.38233 * 120.00123 * 179.97438 * 21 20 6 23 23 C 1.38232 * 120.00218 * 359.96347 * 22 21 20 24 24 C 1.38232 * 119.99688 * 359.97438 * 23 22 21 25 25 C 1.38231 * 120.00291 * 0.07433 * 24 23 22 26 26 H 1.09002 * 109.47055 * 299.99874 * 1 2 3 27 27 H 1.08997 * 109.47327 * 59.99580 * 1 2 3 28 28 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47055 * 240.00126 * 2 1 3 30 30 H 1.08998 * 109.47054 * 119.99945 * 2 1 3 31 31 H 0.96995 * 119.99909 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.47687 * 85.82702 * 11 10 8 33 33 H 1.09011 * 109.46958 * 205.82376 * 11 10 8 34 34 H 1.09000 * 109.47601 * 325.82299 * 11 10 8 35 35 H 0.97003 * 119.99489 * 180.02562 * 15 14 12 36 36 H 1.08008 * 120.00010 * 359.97438 * 21 20 6 37 37 H 1.08003 * 119.99621 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.00292 * 179.72015 * 23 22 21 39 39 H 1.08006 * 119.99687 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00287 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0484 0.0000 7 1 3.1734 3.6712 -0.5901 8 6 5.2274 3.0925 -0.5999 9 8 5.9349 2.1078 -0.5662 10 7 5.6771 4.2260 -1.1738 11 6 4.8781 5.4516 -1.0990 12 6 6.8821 4.2321 -1.8275 13 1 7.7107 3.6591 -1.4380 14 6 7.0375 4.9752 -2.9912 15 7 8.2413 5.2902 -3.4139 16 14 5.5353 5.5266 -3.9548 17 1 5.1267 6.8807 -3.5027 18 1 5.8630 5.5661 -5.4027 19 1 4.4218 4.5712 -3.7253 20 6 3.8957 3.5640 1.4151 21 6 3.3985 4.8194 1.7114 22 6 3.4439 5.2921 3.0096 23 6 3.9858 4.5092 4.0117 24 6 4.4817 3.2533 3.7157 25 6 4.4373 2.7810 2.4174 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9877 0.9299 0.0005 32 1 5.1000 5.9739 -0.1683 33 1 5.1213 6.0960 -1.9440 34 1 3.8187 5.1973 -1.1291 35 1 8.3497 5.8093 -4.2261 36 1 2.9746 5.4309 0.9285 37 1 3.0558 6.2731 3.2409 38 1 4.0253 4.8803 5.0252 39 1 4.9055 2.6418 4.4986 40 1 4.8252 1.7999 2.1860 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066644054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:41 Heat of formation + Delta-G solvation = -53.679939 kcal Electronic energy + Delta-G solvation = -23705.036065 eV Core-core repulsion = 20291.437935 eV Total energy + Delta-G solvation = -3413.598130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.75368 -40.19745 -39.63387 -37.01589 -35.79721 -34.25392 -33.76690 -32.24404 -31.77143 -28.94543 -28.23037 -26.55637 -24.82139 -23.52130 -22.86767 -21.23306 -20.78388 -19.20022 -18.60253 -18.23881 -17.71190 -17.13019 -17.06346 -16.66504 -16.29346 -15.71615 -15.65888 -15.33526 -14.73508 -14.61177 -14.53780 -14.29552 -14.09880 -14.07899 -13.65387 -13.58538 -13.33408 -13.13556 -12.74911 -12.62697 -12.36556 -12.17681 -12.02173 -11.95468 -11.82838 -11.16193 -10.98384 -10.81416 -10.23192 -9.85225 -9.79705 -9.62240 -8.56891 -6.23439 0.33954 0.49419 1.14433 1.27214 1.39370 1.56057 1.74056 2.01858 2.11515 2.59837 2.84002 3.00000 3.63506 3.69808 3.79332 3.85702 4.10697 4.15942 4.20988 4.24839 4.27428 4.27765 4.45396 4.61768 4.65936 4.69586 4.75135 4.99931 5.01142 5.07127 5.11500 5.20743 5.37531 5.43854 5.53194 5.58651 5.63866 5.95905 6.08723 6.40157 6.48709 6.79363 7.13229 7.19753 7.65336 8.59466 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.006342 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.845178 B = 4413.829352 C = 5495.701117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C 0.508 3.492 4 O -0.577 6.577 5 N -0.708 5.708 6 C 0.180 3.820 7 H 0.104 0.896 8 C 0.466 3.534 9 O -0.595 6.595 10 N -0.471 5.471 11 C 0.052 3.948 12 C -0.337 4.337 13 H 0.052 0.948 14 C 0.017 3.983 15 N -0.905 5.905 16 Si 0.948 3.052 17 H -0.236 1.236 18 H -0.285 1.285 19 H -0.264 1.264 20 C -0.107 4.107 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.116 4.116 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.413 0.587 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.283 0.717 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.257 -3.614 11.220 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.297 3.703 4 O -0.456 6.456 5 N -0.361 5.361 6 C 0.070 3.930 7 H 0.121 0.879 8 C 0.254 3.746 9 O -0.479 6.479 10 N -0.191 5.191 11 C -0.090 4.090 12 C -0.465 4.465 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.542 5.542 16 Si 0.771 3.229 17 H -0.161 1.161 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.134 4.134 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.251 0.749 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.161 0.839 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.307 -3.343 11.070 19.184 hybrid contribution 0.617 -0.057 -0.895 1.088 sum -14.690 -3.401 10.176 18.191 Atomic orbital electron populations 1.21517 0.92628 1.02823 1.02035 1.21714 0.98690 0.90684 1.06544 1.21637 0.80882 0.93586 0.74147 1.90650 1.55784 1.48017 1.51160 1.45889 1.08025 1.07196 1.74995 1.19441 0.92893 0.86087 0.94546 0.87855 1.20668 0.88587 0.82962 0.82360 1.90505 1.59059 1.35963 1.62412 1.43610 1.18632 1.07836 1.49071 1.22408 0.95758 0.87653 1.03218 1.18678 0.88038 1.32119 1.07616 0.93040 1.26095 0.99944 0.95891 0.96641 1.69828 1.24106 1.36345 1.23962 0.85889 0.79238 0.80140 0.77619 1.16127 1.21144 1.18809 1.19882 1.01156 0.96305 0.93504 1.21277 0.99128 0.94707 0.98384 1.21459 0.99436 1.01022 0.92023 1.21552 0.97443 0.93943 1.00628 1.21412 0.99970 0.97218 0.95924 1.21062 0.98789 0.99920 0.93628 0.93193 0.93455 0.89303 0.86940 0.86416 0.74939 0.90465 0.91834 0.89696 0.90766 0.85083 0.83056 0.82946 0.83860 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.20 71.98 0.66 -1.76 16 2 C -0.14 -2.61 6.42 29.85 0.19 -2.42 16 3 C 0.51 15.00 7.79 87.66 0.68 15.68 16 4 O -0.58 -20.73 15.65 -3.04 -0.05 -20.77 16 5 N -0.71 -22.81 4.52 -449.68 -2.03 -24.84 16 6 C 0.18 6.65 1.87 43.50 0.08 6.73 16 7 H 0.10 3.85 5.47 -2.39 -0.01 3.83 16 8 C 0.47 21.80 6.73 87.66 0.59 22.39 16 9 O -0.60 -31.58 15.86 -3.08 -0.05 -31.63 16 10 N -0.47 -23.14 2.59 -658.90 -1.71 -24.85 16 11 C 0.05 2.01 7.87 127.77 1.01 3.01 16 12 C -0.34 -19.76 9.43 84.04 0.79 -18.97 16 13 H 0.05 3.51 7.86 -2.91 -0.02 3.49 16 14 C 0.02 0.97 5.34 84.92 0.45 1.42 16 15 N -0.91 -53.37 13.96 21.66 0.30 -53.07 16 16 Si 0.95 41.80 24.91 68.60 1.71 43.51 16 17 H -0.24 -9.06 6.58 99.48 0.66 -8.40 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 C -0.11 -3.57 4.77 -19.87 -0.09 -3.67 16 21 C -0.12 -3.38 8.64 22.27 0.19 -3.19 16 22 C -0.12 -2.88 10.05 22.27 0.22 -2.65 16 23 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 24 C -0.13 -3.23 10.05 22.27 0.22 -3.00 16 25 C -0.12 -3.63 9.27 22.27 0.21 -3.42 16 26 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 27 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.41 12.69 7.79 -92.71 -0.72 11.97 16 32 H 0.08 2.69 7.75 -2.39 -0.02 2.67 16 33 H 0.06 2.53 3.15 -2.38 -0.01 2.52 16 34 H 0.08 2.80 5.44 -2.39 -0.01 2.79 16 35 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.13 3.44 7.17 -2.91 -0.02 3.42 16 37 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.11 3.61 7.90 -2.91 -0.02 3.59 16 Total: -1.00 -75.84 331.37 3.90 -71.94 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.29 Total: 31.97 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.43 Total: 7.75 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.44 Total: -102.75 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.10 Total: -52.41 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.71 Total: 43.51 kcal Total: -75.84 3.90 -71.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.256 kcal (2) G-P(sol) polarization free energy of solvation -75.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds