Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47486 * 2 1 4 4 O 1.21283 * 119.99992 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00331 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00294 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.46794 * 34.99314 * 6 5 3 8 8 C 1.50704 * 109.47186 * 154.99799 * 6 5 3 9 9 O 1.21290 * 119.99868 * 19.98233 * 8 6 5 10 10 N 1.34779 * 119.99545 * 199.71019 * 8 6 5 11 11 C 1.46498 * 120.00313 * 4.59719 * 10 8 6 12 12 C 1.37101 * 119.99390 * 184.60055 * 10 8 6 13 13 H 1.07994 * 120.00272 * 353.15792 * 12 10 8 14 14 C 1.38954 * 119.99517 * 173.16241 * 12 10 8 15 15 N 1.31412 * 119.99955 * 8.40009 * 14 12 10 16 16 Si 1.86800 * 119.99636 * 188.40627 * 14 12 10 17 17 H 1.48494 * 109.47286 * 59.99695 * 16 14 12 18 18 H 1.48505 * 109.46716 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46843 * 299.99581 * 16 14 12 20 20 C 1.50704 * 109.46730 * 274.99512 * 6 5 3 21 21 C 1.38236 * 119.99794 * 313.01713 * 20 6 5 22 22 C 1.38236 * 119.99741 * 179.81072 * 21 20 6 23 23 C 1.38234 * 119.99990 * 0.40026 * 22 21 20 24 24 C 1.38241 * 120.00107 * 359.85323 * 23 22 21 25 25 C 1.38235 * 119.99865 * 359.95902 * 24 23 22 26 26 H 1.09003 * 109.46665 * 299.99935 * 1 2 3 27 27 H 1.08996 * 109.47148 * 59.99556 * 1 2 3 28 28 H 1.09000 * 109.47648 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46658 * 239.99534 * 2 1 3 30 30 H 1.09002 * 109.47537 * 120.00237 * 2 1 3 31 31 H 0.97011 * 119.99870 * 359.97438 * 5 3 2 32 32 H 1.09007 * 109.46832 * 1.44678 * 11 10 8 33 33 H 1.08995 * 109.47071 * 121.45209 * 11 10 8 34 34 H 1.08999 * 109.47231 * 241.45487 * 11 10 8 35 35 H 0.96998 * 119.99342 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.00571 * 0.02562 * 21 20 6 37 37 H 1.07997 * 120.00459 * 180.23524 * 22 21 20 38 38 H 1.07997 * 120.00500 * 179.83554 * 23 22 21 39 39 H 1.07998 * 120.00359 * 179.97438 * 24 23 22 40 40 H 1.07993 * 120.00309 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8459 3.0482 0.0000 7 1 3.1736 3.6710 0.5901 8 6 5.2277 3.0922 0.5999 9 8 5.8976 2.0825 0.6544 10 7 5.7212 4.2546 1.0708 11 6 4.8787 5.4529 1.0922 12 6 7.0116 4.3156 1.5297 13 1 7.5967 3.4121 1.6176 14 6 7.5666 5.5398 1.8818 15 7 6.8106 6.6134 1.9336 16 14 9.3875 5.6595 2.2813 17 1 10.1821 5.2310 1.1023 18 1 9.7279 7.0639 2.6233 19 1 9.6999 4.7787 3.4354 20 6 3.8960 3.5638 -1.4152 21 6 4.4618 2.7917 -2.4124 22 6 4.5042 3.2630 -3.7113 23 6 3.9883 4.5098 -4.0113 24 6 3.4272 5.2842 -3.0130 25 6 3.3812 4.8112 -1.7149 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9878 0.9296 -0.0005 32 1 3.8860 5.2059 0.7155 33 1 4.7980 5.8221 2.1145 34 1 5.3252 6.2223 0.4623 35 1 7.1982 7.4681 2.1790 36 1 4.8676 1.8187 -2.1775 37 1 4.9428 2.6582 -4.4912 38 1 4.0238 4.8792 -5.0255 39 1 3.0244 6.2585 -3.2473 40 1 2.9433 5.4163 -0.9349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066644055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -32.154533 kcal Electronic energy + Delta-G solvation = -23652.266070 eV Core-core repulsion = 20239.601351 eV Total energy + Delta-G solvation = -3412.664718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16113 -38.69402 -38.00664 -35.09032 -34.14337 -32.77358 -31.81153 -30.80697 -30.52939 -27.28716 -26.20427 -24.49544 -23.58877 -22.26135 -21.48376 -19.91144 -19.12381 -17.28941 -16.93398 -16.86199 -15.73497 -15.53757 -15.46797 -14.96034 -14.55619 -14.18348 -14.04908 -13.96087 -13.32158 -13.28701 -13.05421 -12.58471 -12.38968 -12.21037 -12.04262 -11.72385 -11.66670 -11.48835 -11.14815 -11.08014 -10.97307 -10.82944 -10.60144 -10.45671 -10.20439 -9.64355 -9.11196 -9.07262 -8.66811 -8.55553 -8.13897 -7.96489 -6.33117 -3.88851 1.64128 1.75174 2.88869 3.12775 3.19990 3.23119 3.40862 3.73105 4.04394 4.17324 4.81919 4.92260 5.03325 5.12919 5.13229 5.17238 5.22850 5.31695 5.43462 5.58594 5.66911 5.70888 5.78816 5.86261 5.93918 5.95279 6.21045 6.23273 6.33439 6.36022 6.68343 6.76676 6.79969 6.97583 7.04448 7.31232 7.34273 7.48489 7.83602 7.95756 8.36942 8.51416 9.07007 9.32934 9.82753 10.60716 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.005503 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.909881 B = 5086.604572 C = 6002.145247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.143 4.143 3 C 0.511 3.489 4 O -0.545 6.545 5 N -0.705 5.705 6 C 0.173 3.827 7 H 0.106 0.894 8 C 0.433 3.567 9 O -0.595 6.595 10 N -0.429 5.429 11 C 0.108 3.892 12 C -0.303 4.303 13 H 0.106 0.894 14 C 0.030 3.970 15 N -0.881 5.881 16 Si 0.933 3.067 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.076 4.076 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.097 4.097 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.409 0.591 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.268 0.732 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 -5.861 -7.262 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.183 4.183 3 C 0.297 3.703 4 O -0.423 6.423 5 N -0.358 5.358 6 C 0.064 3.936 7 H 0.123 0.877 8 C 0.220 3.780 9 O -0.482 6.482 10 N -0.146 5.146 11 C -0.036 4.036 12 C -0.431 4.431 13 H 0.123 0.877 14 C -0.173 4.173 15 N -0.521 5.521 16 Si 0.759 3.241 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.077 4.077 21 C -0.115 4.115 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.116 4.116 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.245 0.755 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.479 -5.436 -7.136 12.344 hybrid contribution 1.255 0.051 0.227 1.277 sum -7.223 -5.385 -6.909 11.354 Atomic orbital electron populations 1.21508 0.93189 1.01212 1.03312 1.21608 0.98399 0.93982 1.04338 1.20743 0.82000 0.91812 0.75722 1.90673 1.55308 1.46478 1.49807 1.45821 1.07130 1.08339 1.74465 1.19573 0.96598 0.83987 0.93396 0.87676 1.19435 0.87839 0.84808 0.85954 1.90479 1.60666 1.33758 1.63283 1.43610 1.12137 1.07510 1.51306 1.22017 0.90155 0.87706 1.03675 1.19773 0.87545 0.95112 1.40637 0.87652 1.25353 1.00457 0.94847 0.96598 1.70161 1.35039 1.00098 1.46826 0.85889 0.81823 0.77260 0.79102 1.19789 1.20802 1.19769 1.19898 0.98339 0.94990 0.94523 1.20930 0.98083 0.99944 0.92558 1.21039 1.00603 0.96410 0.96339 1.21064 0.99396 0.94859 0.98960 1.21047 1.00305 0.99668 0.92990 1.21071 0.98600 0.95171 0.96747 0.92017 0.92070 0.92350 0.89055 0.88922 0.75450 0.95595 0.91042 0.90702 0.92103 0.86228 0.86444 0.86544 0.86210 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.20 37.16 0.34 -1.09 16 2 C -0.14 -1.60 6.42 -27.89 -0.18 -1.78 16 3 C 0.51 8.16 7.79 -10.99 -0.09 8.07 16 4 O -0.55 -10.44 15.65 5.55 0.09 -10.36 16 5 N -0.71 -12.05 4.55 -56.07 -0.26 -12.31 16 6 C 0.17 3.43 1.84 -70.23 -0.13 3.30 16 7 H 0.11 2.15 5.65 -51.93 -0.29 1.85 16 8 C 0.43 10.35 6.76 -10.98 -0.07 10.28 16 9 O -0.59 -15.47 15.51 5.55 0.09 -15.39 16 10 N -0.43 -10.95 3.03 -122.19 -0.37 -11.32 16 11 C 0.11 2.47 8.36 59.85 0.50 2.97 16 12 C -0.30 -8.31 9.55 -14.93 -0.14 -8.45 16 13 H 0.11 3.01 7.19 -52.49 -0.38 2.63 16 14 C 0.03 0.78 5.45 -17.47 -0.10 0.69 16 15 N -0.88 -22.75 9.48 55.50 0.53 -22.23 16 16 Si 0.93 20.50 29.56 -169.99 -5.03 15.47 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 C -0.08 -1.41 4.76 -104.62 -0.50 -1.91 16 21 C -0.10 -1.68 9.26 -39.58 -0.37 -2.05 16 22 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 23 C -0.12 -1.79 10.05 -39.58 -0.40 -2.18 16 24 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 25 C -0.10 -1.69 8.87 -39.58 -0.35 -2.04 16 26 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.41 6.61 7.74 -40.82 -0.32 6.29 16 32 H 0.03 0.52 3.36 -51.92 -0.17 0.34 16 33 H 0.07 1.72 7.14 -51.93 -0.37 1.35 16 34 H 0.07 1.80 6.97 -51.93 -0.36 1.44 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.12 2.03 7.93 -52.48 -0.42 1.62 16 37 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.12 2.05 6.65 -52.49 -0.35 1.71 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -31.27 333.24 -7.37 -38.64 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.17 Total: 11.22 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.27 Total: 1.23 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.10 Total: -45.85 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: 0.17 Total: -25.74 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.27 -7.37 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.489 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds