Wall clock time and date at job start Tue Mar 31 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47486 * 2 1 4 4 O 1.21283 * 119.99992 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00331 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00294 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.46794 * 34.99314 * 6 5 3 8 8 C 1.50704 * 109.47186 * 154.99799 * 6 5 3 9 9 O 1.21290 * 119.99868 * 19.98233 * 8 6 5 10 10 N 1.34779 * 119.99545 * 199.71019 * 8 6 5 11 11 C 1.46498 * 120.00313 * 4.59719 * 10 8 6 12 12 C 1.37101 * 119.99390 * 184.60055 * 10 8 6 13 13 H 1.07994 * 120.00272 * 353.15792 * 12 10 8 14 14 C 1.38954 * 119.99517 * 173.16241 * 12 10 8 15 15 N 1.31412 * 119.99955 * 8.40009 * 14 12 10 16 16 Si 1.86800 * 119.99636 * 188.40627 * 14 12 10 17 17 H 1.48494 * 109.47286 * 59.99695 * 16 14 12 18 18 H 1.48505 * 109.46716 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46843 * 299.99581 * 16 14 12 20 20 C 1.50704 * 109.46730 * 274.99512 * 6 5 3 21 21 C 1.38236 * 119.99794 * 313.01713 * 20 6 5 22 22 C 1.38236 * 119.99741 * 179.81072 * 21 20 6 23 23 C 1.38234 * 119.99990 * 0.40026 * 22 21 20 24 24 C 1.38241 * 120.00107 * 359.85323 * 23 22 21 25 25 C 1.38235 * 119.99865 * 359.95902 * 24 23 22 26 26 H 1.09003 * 109.46665 * 299.99935 * 1 2 3 27 27 H 1.08996 * 109.47148 * 59.99556 * 1 2 3 28 28 H 1.09000 * 109.47648 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46658 * 239.99534 * 2 1 3 30 30 H 1.09002 * 109.47537 * 120.00237 * 2 1 3 31 31 H 0.97011 * 119.99870 * 359.97438 * 5 3 2 32 32 H 1.09007 * 109.46832 * 1.44678 * 11 10 8 33 33 H 1.08995 * 109.47071 * 121.45209 * 11 10 8 34 34 H 1.08999 * 109.47231 * 241.45487 * 11 10 8 35 35 H 0.96998 * 119.99342 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.00571 * 0.02562 * 21 20 6 37 37 H 1.07997 * 120.00459 * 180.23524 * 22 21 20 38 38 H 1.07997 * 120.00500 * 179.83554 * 23 22 21 39 39 H 1.07998 * 120.00359 * 179.97438 * 24 23 22 40 40 H 1.07993 * 120.00309 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8459 3.0482 0.0000 7 1 3.1736 3.6710 0.5901 8 6 5.2277 3.0922 0.5999 9 8 5.8976 2.0825 0.6544 10 7 5.7212 4.2546 1.0708 11 6 4.8787 5.4529 1.0922 12 6 7.0116 4.3156 1.5297 13 1 7.5967 3.4121 1.6176 14 6 7.5666 5.5398 1.8818 15 7 6.8106 6.6134 1.9336 16 14 9.3875 5.6595 2.2813 17 1 10.1821 5.2310 1.1023 18 1 9.7279 7.0639 2.6233 19 1 9.6999 4.7787 3.4354 20 6 3.8960 3.5638 -1.4152 21 6 4.4618 2.7917 -2.4124 22 6 4.5042 3.2630 -3.7113 23 6 3.9883 4.5098 -4.0113 24 6 3.4272 5.2842 -3.0130 25 6 3.3812 4.8112 -1.7149 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9878 0.9296 -0.0005 32 1 3.8860 5.2059 0.7155 33 1 4.7980 5.8221 2.1145 34 1 5.3252 6.2223 0.4623 35 1 7.1982 7.4681 2.1790 36 1 4.8676 1.8187 -2.1775 37 1 4.9428 2.6582 -4.4912 38 1 4.0238 4.8792 -5.0255 39 1 3.0244 6.2585 -3.2473 40 1 2.9433 5.4163 -0.9349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066644055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:43 Heat of formation + Delta-G solvation = -51.601255 kcal Electronic energy + Delta-G solvation = -23653.109343 eV Core-core repulsion = 20239.601351 eV Total energy + Delta-G solvation = -3413.507991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65481 -40.11075 -39.56098 -36.95562 -35.70806 -33.93662 -33.58103 -32.15771 -31.76491 -28.93468 -27.95230 -26.20773 -24.83096 -23.50884 -22.87525 -21.22763 -20.79047 -19.06198 -18.58834 -18.17492 -17.36765 -17.08479 -16.71828 -16.29750 -16.19561 -15.81919 -15.64782 -15.38796 -14.84926 -14.55108 -14.32361 -14.03215 -13.81953 -13.67912 -13.45052 -13.26675 -13.10511 -12.85915 -12.71924 -12.61485 -12.37487 -12.15046 -12.11983 -12.01013 -11.85360 -11.05387 -10.96824 -10.76324 -10.16950 -9.96339 -9.80912 -9.59382 -8.30348 -5.96025 0.36942 0.50457 1.35523 1.39726 1.50412 1.62256 1.88331 2.04707 2.29773 2.78949 3.06601 3.14946 3.69187 3.86280 3.87061 3.90218 4.13940 4.22040 4.25275 4.27407 4.29570 4.50820 4.63355 4.71149 4.76535 5.00694 5.03055 5.08128 5.10788 5.12463 5.25486 5.39062 5.39621 5.41071 5.54502 5.58798 5.66056 5.95268 6.10216 6.36798 6.54405 7.06422 7.21450 7.37688 7.87214 8.61561 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.005503 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.909881 B = 5086.604572 C = 6002.145247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.135 4.135 3 C 0.506 3.494 4 O -0.581 6.581 5 N -0.705 5.705 6 C 0.187 3.813 7 H 0.093 0.907 8 C 0.431 3.569 9 O -0.622 6.622 10 N -0.447 5.447 11 C 0.125 3.875 12 C -0.343 4.343 13 H 0.083 0.917 14 C -0.001 4.001 15 N -0.892 5.892 16 Si 0.995 3.005 17 H -0.273 1.273 18 H -0.268 1.268 19 H -0.270 1.270 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.413 0.587 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.274 0.726 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 -6.129 -8.881 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.295 3.705 4 O -0.461 6.461 5 N -0.357 5.357 6 C 0.078 3.922 7 H 0.111 0.889 8 C 0.219 3.781 9 O -0.510 6.510 10 N -0.163 5.163 11 C -0.018 4.018 12 C -0.471 4.471 13 H 0.101 0.899 14 C -0.203 4.203 15 N -0.531 5.531 16 Si 0.818 3.182 17 H -0.198 1.198 18 H -0.193 1.193 19 H -0.195 1.195 20 C -0.102 4.102 21 C -0.134 4.134 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.250 0.750 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.628 -5.708 -8.756 13.553 hybrid contribution 1.248 0.124 0.677 1.425 sum -7.381 -5.585 -8.079 12.285 Atomic orbital electron populations 1.21518 0.92670 1.02831 1.01977 1.21705 0.98654 0.90584 1.06551 1.21681 0.80982 0.93606 0.74243 1.90652 1.55899 1.48140 1.51363 1.45874 1.07888 1.07268 1.74713 1.19245 0.93285 0.85615 0.94089 0.88916 1.20168 0.89197 0.83953 0.84742 1.90437 1.62051 1.34562 1.63968 1.43811 1.12080 1.08584 1.51833 1.21806 0.90947 0.86689 1.02331 1.19763 0.88840 0.95136 1.43353 0.89867 1.26114 1.04345 0.94108 0.95742 1.70253 1.36384 1.00367 1.46143 0.84976 0.76704 0.77822 0.78726 1.19801 1.19259 1.19524 1.19888 1.00403 0.96074 0.93857 1.21057 0.98751 0.99982 0.93619 1.21421 0.99908 0.97129 0.95924 1.21532 0.97527 0.94119 1.00496 1.21432 0.99687 1.00918 0.92127 1.21233 0.99400 0.94923 0.98132 0.93511 0.93311 0.89167 0.86425 0.86848 0.74961 0.93057 0.92724 0.92037 0.91580 0.86699 0.83522 0.82800 0.83435 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.20 71.98 0.66 -1.94 16 2 C -0.14 -2.78 6.42 29.85 0.19 -2.59 16 3 C 0.51 16.07 7.79 87.66 0.68 16.76 16 4 O -0.58 -22.56 15.65 -3.04 -0.05 -22.61 16 5 N -0.70 -24.40 4.55 -449.68 -2.05 -26.45 16 6 C 0.19 7.61 1.84 43.50 0.08 7.69 16 7 H 0.09 3.94 5.65 -2.39 -0.01 3.93 16 8 C 0.43 21.37 6.76 87.66 0.59 21.96 16 9 O -0.62 -33.50 15.51 -3.06 -0.05 -33.55 16 10 N -0.45 -23.60 3.03 -658.89 -1.99 -25.59 16 11 C 0.13 5.92 8.36 127.77 1.07 6.99 16 12 C -0.34 -19.48 9.55 84.04 0.80 -18.68 16 13 H 0.08 4.97 7.19 -2.91 -0.02 4.95 16 14 C 0.00 -0.07 5.45 84.93 0.46 0.39 16 15 N -0.89 -46.47 9.48 21.66 0.21 -46.27 16 16 Si 0.99 42.08 29.56 68.60 2.03 44.11 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 C -0.10 -3.78 4.76 -19.86 -0.09 -3.88 16 21 C -0.12 -3.98 9.26 22.27 0.21 -3.77 16 22 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 23 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 24 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 25 C -0.12 -4.09 8.87 22.27 0.20 -3.89 16 26 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 27 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.41 13.50 7.74 -92.70 -0.72 12.78 16 32 H 0.05 2.13 3.36 -2.38 -0.01 2.12 16 33 H 0.05 2.72 7.14 -2.39 -0.02 2.71 16 34 H 0.06 3.04 6.97 -2.39 -0.02 3.02 16 35 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 36 H 0.11 3.94 7.93 -2.91 -0.02 3.91 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.12 4.09 6.65 -2.91 -0.02 4.08 16 Total: -1.00 -69.78 333.24 3.97 -65.81 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.35 Total: 34.91 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.52 Total: 9.64 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -3.84 Total: -98.31 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -0.10 Total: -56.16 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -69.78 3.97 -65.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.210 kcal (2) G-P(sol) polarization free energy of solvation -69.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds