Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47592 * 2 1 4 4 C 1.50703 * 109.47242 * 119.99771 * 2 1 3 5 5 H 1.07998 * 120.00541 * 119.99513 * 4 2 1 6 6 C 1.37885 * 119.99705 * 299.99861 * 4 2 1 7 7 N 1.31514 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99812 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47155 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46756 * 120.00097 * 8 6 4 11 11 H 1.48498 * 109.47275 * 239.99998 * 8 6 4 12 12 N 1.46503 * 109.47378 * 239.99599 * 2 1 3 13 13 C 1.34777 * 119.99944 * 84.99956 * 12 2 1 14 14 O 1.21640 * 119.99835 * 5.12758 * 13 12 2 15 15 C 1.47083 * 119.99708 * 185.12920 * 13 12 2 16 16 C 1.39002 * 120.76847 * 174.21130 * 15 13 12 17 17 C 1.40195 * 119.68801 * 179.91568 * 16 15 13 18 18 C 1.35290 * 119.87499 * 359.67214 * 17 16 15 19 19 N 1.36362 * 120.48763 * 0.59569 * 18 17 16 20 20 H 0.96999 * 119.01683 * 179.49694 * 19 18 17 21 21 C 1.34223 * 121.96392 * 359.52183 * 19 18 17 22 22 O 1.21887 * 120.23894 * 180.02562 * 21 19 18 23 23 C 1.50822 * 122.58851 * 180.64466 * 18 17 16 24 24 C 1.52665 * 110.74166 * 341.87781 * 23 18 17 25 25 C 1.53360 * 108.25272 * 51.07653 * 24 23 18 26 26 C 1.50673 * 117.18967 * 179.27867 * 17 16 15 27 27 H 1.09002 * 109.46886 * 300.00464 * 1 2 3 28 28 H 1.09008 * 109.46700 * 60.00290 * 1 2 3 29 29 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 30 30 H 0.96994 * 120.00145 * 180.02562 * 7 6 4 31 31 H 0.96997 * 119.99597 * 265.00456 * 12 2 1 32 32 H 1.07997 * 120.15374 * 359.86792 * 16 15 13 33 33 H 1.09001 * 109.22425 * 221.55360 * 23 18 17 34 34 H 1.08996 * 109.22508 * 102.20466 * 23 18 17 35 35 H 1.09002 * 109.70693 * 291.38263 * 24 23 18 36 36 H 1.09005 * 109.70564 * 170.76553 * 24 23 18 37 37 H 1.09000 * 109.71974 * 50.45871 * 25 24 23 38 38 H 1.08998 * 109.72169 * 171.10703 * 25 24 23 39 39 H 1.08999 * 109.22856 * 42.22387 * 26 17 16 40 40 H 1.09001 * 109.21791 * 282.86559 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.1464 -2.2867 3.6040 10 1 3.1466 -0.1870 4.8165 11 1 1.1661 -1.5863 4.8162 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.9476 1.1811 -2.3907 15 6 2.5288 -0.7352 -3.5835 16 6 2.5502 -0.0830 -4.8108 17 6 2.9192 -0.7877 -5.9652 18 6 3.2584 -2.0945 -5.8775 19 7 3.2327 -2.7367 -4.6748 20 1 3.4729 -3.6757 -4.6376 21 6 2.8844 -2.1083 -3.5411 22 8 2.8726 -2.7129 -2.4828 23 6 3.6785 -2.9070 -7.0767 24 6 3.2438 -2.2246 -8.3713 25 6 3.7199 -0.7674 -8.3295 26 6 2.9069 -0.0303 -7.2677 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 0.7087 1.1615 3.4843 31 1 2.2490 -1.6318 -1.1524 32 1 2.2829 0.9614 -4.8749 33 1 3.2199 -3.8942 -7.0198 34 1 4.7631 -3.0153 -7.0747 35 1 2.1574 -2.2542 -8.4555 36 1 3.6931 -2.7338 -9.2240 37 1 4.7784 -0.7335 -8.0714 38 1 3.5630 -0.3011 -9.3022 39 1 3.3349 0.9599 -7.1112 40 1 1.8781 0.0744 -7.6121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068322941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = -59.502562 kcal Electronic energy + Delta-G solvation = -23001.754241 eV Core-core repulsion = 19587.903623 eV Total energy + Delta-G solvation = -3413.850618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59051 -38.84736 -38.03022 -35.66043 -34.66107 -33.96598 -32.11286 -30.52525 -29.75484 -28.49799 -25.12038 -24.59509 -23.86523 -23.37954 -21.63857 -20.10102 -19.48799 -18.15504 -17.40542 -16.83891 -16.21407 -15.82381 -15.41267 -15.04417 -14.95221 -14.42338 -14.34230 -14.05617 -13.65682 -13.55245 -13.21415 -12.99019 -12.68835 -12.62428 -12.20689 -11.57323 -11.42503 -11.32977 -11.15767 -11.04995 -10.95208 -10.84087 -10.60199 -10.22213 -10.09546 -10.04938 -9.90325 -9.01195 -8.84293 -8.39106 -8.01419 -7.58180 -5.97405 -4.04262 0.47101 1.71391 2.68282 3.16271 3.34197 3.40962 3.46710 3.90754 4.18492 4.24330 4.31704 4.38722 4.50600 4.53317 4.69982 4.81707 4.97432 5.03586 5.13767 5.27090 5.33078 5.34986 5.45924 5.53532 5.65858 5.71561 5.86843 5.91528 6.04855 6.26265 6.52009 6.78424 6.98425 7.13222 7.31858 7.65776 7.79855 7.87512 7.99724 8.12237 8.31986 8.96152 8.98945 9.42360 9.63469 11.09108 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034014 B = 0.003583 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.000082 B = 7812.098643 C = 8380.187689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.049 0.951 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.691 5.691 13 C 0.556 3.444 14 O -0.567 6.567 15 C -0.249 4.249 16 C 0.043 3.957 17 C -0.190 4.190 18 C 0.177 3.823 19 N -0.607 5.607 20 H 0.413 0.587 21 C 0.530 3.470 22 O -0.532 6.532 23 C -0.092 4.092 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.062 4.062 27 H 0.091 0.909 28 H 0.013 0.987 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.406 0.594 32 H 0.149 0.851 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 -7.431 -25.656 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.067 0.933 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.346 5.346 13 C 0.341 3.659 14 O -0.449 6.449 15 C -0.256 4.256 16 C 0.020 3.980 17 C -0.195 4.195 18 C 0.067 3.933 19 N -0.239 5.239 20 H 0.250 0.750 21 C 0.330 3.670 22 O -0.413 6.413 23 C -0.130 4.130 24 C -0.153 4.153 25 C -0.161 4.161 26 C -0.100 4.100 27 H 0.109 0.891 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.249 0.751 32 H 0.166 0.834 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.179 -6.747 -24.751 26.171 hybrid contribution 0.478 -1.292 0.937 1.666 sum 5.657 -8.038 -23.814 25.763 Atomic orbital electron populations 1.22072 0.98519 0.99086 1.00721 1.18767 0.90963 0.94143 0.80429 0.93348 1.21318 1.31800 1.12970 0.90293 0.91967 1.24890 0.94981 0.95034 0.98962 1.69920 1.36388 1.22706 1.23509 0.86395 0.78571 0.79600 0.82577 1.19705 1.20949 1.20940 1.46992 1.62488 1.15687 1.09442 1.17434 0.78722 0.86621 0.83157 1.90720 1.54121 1.13991 1.86073 1.21411 1.13494 0.93714 0.96953 1.22051 0.85757 1.00452 0.89755 1.18882 1.11147 0.92620 0.96830 1.20325 0.94047 0.92733 0.86151 1.43584 1.58109 1.15041 1.07132 0.74957 1.17028 0.78911 0.88134 0.82923 1.90769 1.55525 1.67619 1.27381 1.20776 1.02633 0.98337 0.91248 1.21525 1.02042 0.96079 0.95696 1.21611 1.00234 0.95122 0.99137 1.20255 1.01178 0.98255 0.90270 0.89090 0.96828 0.95503 0.92824 0.75119 0.83366 0.89448 0.88782 0.90873 0.90531 0.91282 0.90832 0.90236 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.26 37.16 0.34 -3.64 16 2 C 0.26 7.44 2.60 -69.08 -0.18 7.26 16 3 H 0.05 1.55 7.51 -51.93 -0.39 1.16 16 4 C -0.53 -15.55 8.73 -34.44 -0.30 -15.85 16 5 H 0.06 1.82 7.74 -52.49 -0.41 1.42 16 6 C 0.06 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -26.53 11.32 55.43 0.63 -25.90 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 N -0.69 -17.70 4.98 -56.12 -0.28 -17.98 16 13 C 0.56 13.17 7.70 -12.67 -0.10 13.07 16 14 O -0.57 -14.82 16.03 5.24 0.08 -14.74 16 15 C -0.25 -4.52 5.91 -104.63 -0.62 -5.14 16 16 C 0.04 0.60 9.24 -38.56 -0.36 0.24 16 17 C -0.19 -1.89 5.71 -104.95 -0.60 -2.49 16 18 C 0.18 1.54 6.65 -81.57 -0.54 1.00 16 19 N -0.61 -6.64 5.19 -10.86 -0.06 -6.70 16 20 H 0.41 3.37 8.64 -40.82 -0.35 3.02 16 21 C 0.53 8.82 7.73 -15.11 -0.12 8.71 16 22 O -0.53 -10.71 14.59 5.02 0.07 -10.63 16 23 C -0.09 -0.42 5.74 -28.00 -0.16 -0.58 16 24 C -0.12 -0.45 5.99 -26.72 -0.16 -0.61 16 25 C -0.12 -0.57 6.00 -26.70 -0.16 -0.73 16 26 C -0.06 -0.42 5.65 -28.05 -0.16 -0.58 16 27 H 0.09 2.63 6.07 -51.93 -0.32 2.32 16 28 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.41 10.15 5.18 -40.82 -0.21 9.94 16 32 H 0.15 2.02 7.69 -52.49 -0.40 1.62 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 36 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 0.33 8.10 -51.93 -0.42 -0.10 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -36.37 327.65 -8.27 -44.64 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.44 Total: 6.79 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.20 Total: 2.41 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.29 Total: -50.58 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.16 Total: -25.37 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.37 -8.27 -44.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068322941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.863 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds