Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47592 * 2 1 4 4 C 1.50703 * 109.47242 * 119.99771 * 2 1 3 5 5 H 1.07998 * 120.00541 * 119.99513 * 4 2 1 6 6 C 1.37885 * 119.99705 * 299.99861 * 4 2 1 7 7 N 1.31514 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99812 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47155 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46756 * 120.00097 * 8 6 4 11 11 H 1.48498 * 109.47275 * 239.99998 * 8 6 4 12 12 N 1.46503 * 109.47378 * 239.99599 * 2 1 3 13 13 C 1.34777 * 119.99944 * 84.99956 * 12 2 1 14 14 O 1.21640 * 119.99835 * 5.12758 * 13 12 2 15 15 C 1.47083 * 119.99708 * 185.12920 * 13 12 2 16 16 C 1.39002 * 120.76847 * 174.21130 * 15 13 12 17 17 C 1.40195 * 119.68801 * 179.91568 * 16 15 13 18 18 C 1.35290 * 119.87499 * 359.67214 * 17 16 15 19 19 N 1.36362 * 120.48763 * 0.59569 * 18 17 16 20 20 H 0.96999 * 119.01683 * 179.49694 * 19 18 17 21 21 C 1.34223 * 121.96392 * 359.52183 * 19 18 17 22 22 O 1.21887 * 120.23894 * 180.02562 * 21 19 18 23 23 C 1.50822 * 122.58851 * 180.64466 * 18 17 16 24 24 C 1.52665 * 110.74166 * 341.87781 * 23 18 17 25 25 C 1.53360 * 108.25272 * 51.07653 * 24 23 18 26 26 C 1.50673 * 117.18967 * 179.27867 * 17 16 15 27 27 H 1.09002 * 109.46886 * 300.00464 * 1 2 3 28 28 H 1.09008 * 109.46700 * 60.00290 * 1 2 3 29 29 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 30 30 H 0.96994 * 120.00145 * 180.02562 * 7 6 4 31 31 H 0.96997 * 119.99597 * 265.00456 * 12 2 1 32 32 H 1.07997 * 120.15374 * 359.86792 * 16 15 13 33 33 H 1.09001 * 109.22425 * 221.55360 * 23 18 17 34 34 H 1.08996 * 109.22508 * 102.20466 * 23 18 17 35 35 H 1.09002 * 109.70693 * 291.38263 * 24 23 18 36 36 H 1.09005 * 109.70564 * 170.76553 * 24 23 18 37 37 H 1.09000 * 109.71974 * 50.45871 * 25 24 23 38 38 H 1.08998 * 109.72169 * 171.10703 * 25 24 23 39 39 H 1.08999 * 109.22856 * 42.22387 * 26 17 16 40 40 H 1.09001 * 109.21791 * 282.86559 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.1464 -2.2867 3.6040 10 1 3.1466 -0.1870 4.8165 11 1 1.1661 -1.5863 4.8162 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.9476 1.1811 -2.3907 15 6 2.5288 -0.7352 -3.5835 16 6 2.5502 -0.0830 -4.8108 17 6 2.9192 -0.7877 -5.9652 18 6 3.2584 -2.0945 -5.8775 19 7 3.2327 -2.7367 -4.6748 20 1 3.4729 -3.6757 -4.6376 21 6 2.8844 -2.1083 -3.5411 22 8 2.8726 -2.7129 -2.4828 23 6 3.6785 -2.9070 -7.0767 24 6 3.2438 -2.2246 -8.3713 25 6 3.7199 -0.7674 -8.3295 26 6 2.9069 -0.0303 -7.2677 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 0.7087 1.1615 3.4843 31 1 2.2490 -1.6318 -1.1524 32 1 2.2829 0.9614 -4.8749 33 1 3.2199 -3.8942 -7.0198 34 1 4.7631 -3.0153 -7.0747 35 1 2.1574 -2.2542 -8.4555 36 1 3.6931 -2.7338 -9.2240 37 1 4.7784 -0.7335 -8.0714 38 1 3.5630 -0.3011 -9.3022 39 1 3.3349 0.9599 -7.1112 40 1 1.8781 0.0744 -7.6121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068322941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = -86.338403 kcal Electronic energy + Delta-G solvation = -23002.917930 eV Core-core repulsion = 19587.903623 eV Total energy + Delta-G solvation = -3415.014307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.68728 -40.34955 -39.30915 -36.84375 -36.37659 -35.09708 -34.24690 -31.62001 -30.62439 -30.23955 -27.40066 -25.72454 -24.75314 -24.24569 -23.16402 -21.55830 -20.81001 -19.54862 -18.61163 -18.36838 -17.45741 -17.12911 -16.99518 -16.81904 -16.08404 -15.78621 -15.48573 -15.22341 -14.85069 -14.69169 -14.44968 -14.21181 -13.83153 -13.72708 -13.60200 -13.44336 -13.02117 -12.91557 -12.76744 -12.33747 -12.20556 -12.17033 -11.74843 -11.65690 -11.48478 -11.31873 -11.14146 -11.08895 -10.86403 -10.61499 -9.73702 -9.01825 -8.21139 -6.38690 -0.63670 0.64824 1.39253 1.40549 1.54421 1.66512 1.75224 2.35375 2.65450 2.74767 3.07417 3.29275 3.44734 3.75797 3.85568 3.99735 4.09440 4.24345 4.35373 4.56312 4.64539 4.66243 4.76961 4.84403 4.85629 4.98306 5.03233 5.05482 5.11541 5.25692 5.31988 5.36056 5.39475 5.56107 5.58363 5.63433 5.69904 5.73119 5.92056 6.06333 6.67122 6.76350 7.04670 7.28852 7.57146 8.86088 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034014 B = 0.003583 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.000082 B = 7812.098643 C = 8380.187689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.264 3.736 3 H 0.001 0.999 4 C -0.551 4.551 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.978 3.022 9 H -0.268 1.268 10 H -0.275 1.275 11 H -0.271 1.271 12 N -0.701 5.701 13 C 0.551 3.449 14 O -0.608 6.608 15 C -0.314 4.314 16 C 0.076 3.924 17 C -0.203 4.203 18 C 0.215 3.785 19 N -0.587 5.587 20 H 0.431 0.569 21 C 0.529 3.471 22 O -0.580 6.580 23 C -0.093 4.093 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.062 4.062 27 H 0.074 0.926 28 H 0.013 0.987 29 H 0.033 0.967 30 H 0.268 0.732 31 H 0.408 0.592 32 H 0.144 0.856 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -9.804 -28.803 31.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.160 3.840 3 H 0.019 0.981 4 C -0.590 4.590 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.553 5.553 8 Si 0.801 3.199 9 H -0.192 1.192 10 H -0.201 1.201 11 H -0.196 1.196 12 N -0.357 5.357 13 C 0.340 3.660 14 O -0.494 6.494 15 C -0.321 4.321 16 C 0.053 3.947 17 C -0.207 4.207 18 C 0.104 3.896 19 N -0.217 5.217 20 H 0.272 0.728 21 C 0.331 3.669 22 O -0.465 6.465 23 C -0.130 4.130 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.100 4.100 27 H 0.093 0.907 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.252 0.748 32 H 0.162 0.838 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.477 -9.155 -27.965 30.129 hybrid contribution 0.130 -0.525 1.607 1.695 sum 6.607 -9.680 -26.358 28.846 Atomic orbital electron populations 1.21876 0.97962 0.99154 0.99836 1.18439 0.91428 0.92011 0.82118 0.98107 1.21514 1.32806 1.13350 0.91283 0.92336 1.25843 0.94764 0.95663 1.02205 1.70045 1.36783 1.23759 1.24730 0.85223 0.78321 0.78372 0.77961 1.19213 1.20072 1.19578 1.46911 1.63587 1.15727 1.09435 1.18203 0.77196 0.86411 0.84227 1.90659 1.56000 1.15768 1.86955 1.20812 1.20454 0.95145 0.95663 1.22283 0.82413 1.00359 0.89683 1.19254 1.11379 0.93318 0.96797 1.21271 0.89180 0.92613 0.86517 1.43403 1.56076 1.15853 1.06417 0.72792 1.16760 0.78950 0.87557 0.83663 1.90710 1.58143 1.68300 1.29347 1.21095 1.04311 0.98610 0.88988 1.21584 1.02287 0.95470 0.95820 1.21638 0.99835 0.95570 0.98856 1.20360 1.02377 0.98145 0.89077 0.90721 0.96756 0.94747 0.92255 0.74785 0.83781 0.86771 0.86151 0.90918 0.87965 0.91008 0.89213 0.90281 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.52 9.26 71.98 0.67 -6.85 16 2 C 0.26 16.18 2.60 44.24 0.12 16.29 16 3 H 0.00 0.07 7.51 -2.39 -0.02 0.05 16 4 C -0.55 -34.13 8.73 25.60 0.22 -33.90 16 5 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.91 -56.41 11.32 21.45 0.24 -56.17 16 8 Si 0.98 46.26 29.54 68.60 2.03 48.29 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.70 -38.51 4.98 -449.69 -2.24 -40.76 16 13 C 0.55 28.07 7.70 86.56 0.67 28.74 16 14 O -0.61 -34.38 16.03 -4.16 -0.07 -34.45 16 15 C -0.31 -11.93 5.91 -19.87 -0.12 -12.05 16 16 C 0.08 2.14 9.24 22.93 0.21 2.35 16 17 C -0.20 -3.56 5.71 -20.08 -0.11 -3.67 16 18 C 0.22 2.97 6.65 41.21 0.27 3.24 16 19 N -0.59 -11.55 5.19 -306.73 -1.59 -13.14 16 20 H 0.43 5.72 8.64 -92.71 -0.80 4.92 16 21 C 0.53 17.90 7.73 85.24 0.66 18.56 16 22 O -0.58 -24.32 14.59 -4.95 -0.07 -24.39 16 23 C -0.09 -0.31 5.74 29.78 0.17 -0.14 16 24 C -0.11 -0.22 5.99 30.60 0.18 -0.04 16 25 C -0.12 -0.54 6.00 30.62 0.18 -0.36 16 26 C -0.06 -0.64 5.65 29.74 0.17 -0.47 16 27 H 0.07 4.54 6.07 -2.39 -0.01 4.53 16 28 H 0.01 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.41 21.84 5.18 -92.71 -0.48 21.36 16 32 H 0.14 4.09 7.69 -2.91 -0.02 4.06 16 33 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.07 0.22 8.10 -2.39 -0.02 0.20 16 36 H 0.10 -0.18 8.14 -2.38 -0.02 -0.20 16 37 H 0.07 0.32 8.10 -2.39 -0.02 0.30 16 38 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -86.82 327.65 1.84 -84.98 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.20 Total: 22.59 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 3.74 Total: 13.05 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -3.59 Total: -110.06 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -0.14 Total: -58.84 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -86.82 1.84 -84.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068322941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.358 kcal (2) G-P(sol) polarization free energy of solvation -86.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds