Wall clock time and date at job start Tue Mar 31 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21305 * 120.00109 * 2 1 4 4 C 1.46770 * 120.00153 * 180.02562 * 2 1 3 5 5 C 1.39997 * 120.22742 * 5.39089 * 4 2 1 6 6 C 1.37686 * 119.89049 * 180.02562 * 5 4 2 7 7 C 1.38641 * 120.36907 * 359.75071 * 6 5 4 8 8 C 1.38014 * 120.47164 * 0.51062 * 7 6 5 9 9 C 1.38830 * 120.09378 * 359.49098 * 8 7 6 10 10 N 1.39144 * 120.18715 * 180.23080 * 9 8 7 11 11 C 1.34777 * 119.99770 * 25.26649 * 10 9 8 12 12 O 1.21273 * 120.00242 * 5.72642 * 11 10 9 13 13 C 1.50698 * 120.00053 * 185.72918 * 11 10 9 14 14 H 1.09000 * 109.47133 * 299.99449 * 13 11 10 15 15 C 1.53000 * 109.47235 * 59.99904 * 13 11 10 16 16 N 1.46504 * 109.47324 * 179.97438 * 13 11 10 17 17 C 1.46503 * 119.99942 * 300.00363 * 16 13 11 18 18 C 1.36935 * 119.99928 * 119.99653 * 16 13 11 19 19 H 1.08000 * 120.00040 * 34.58720 * 18 16 13 20 20 C 1.38813 * 119.99912 * 214.57961 * 18 16 13 21 21 N 1.31617 * 120.00228 * 5.19625 * 20 18 16 22 22 Si 1.86801 * 119.99996 * 185.18955 * 20 18 16 23 23 H 1.48499 * 109.47199 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47085 * 120.00542 * 22 20 18 25 25 H 1.48500 * 109.47009 * 240.00372 * 22 20 18 26 26 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46952 * 299.99722 * 1 2 3 28 28 H 1.08998 * 109.47174 * 59.99763 * 1 2 3 29 29 H 1.07997 * 120.05974 * 0.02562 * 5 4 2 30 30 H 1.08004 * 119.81385 * 179.97438 * 6 5 4 31 31 H 1.08002 * 119.76564 * 180.27623 * 7 6 5 32 32 H 1.08001 * 119.95333 * 179.76129 * 8 7 6 33 33 H 0.96999 * 120.00663 * 205.26265 * 10 9 8 34 34 H 1.09000 * 109.47432 * 59.99728 * 15 13 11 35 35 H 1.09007 * 109.47054 * 180.02562 * 15 13 11 36 36 H 1.09001 * 109.46905 * 300.00032 * 15 13 11 37 37 H 1.08991 * 109.47351 * 85.06134 * 17 16 13 38 38 H 1.09003 * 109.46931 * 205.06425 * 17 16 13 39 39 H 1.09005 * 109.46898 * 325.06042 * 17 16 13 40 40 H 0.96999 * 120.00409 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2710 -0.0006 5 6 1.5504 -2.4835 -0.1148 6 6 2.2457 -3.6719 -0.1140 7 6 3.6279 -3.6751 -0.0059 8 6 4.3234 -2.4889 0.1129 9 6 3.6419 -1.2795 0.1142 10 7 4.3415 -0.0822 0.2290 11 6 5.6296 -0.0143 -0.1619 12 8 6.1482 -0.9644 -0.7088 13 6 6.4254 1.2422 0.0805 14 1 5.9500 2.0781 -0.4329 15 6 6.4793 1.5300 1.5822 16 7 7.7866 1.0646 -0.4313 17 6 8.6370 -0.0017 0.1036 18 6 8.2639 1.8952 -1.4098 19 1 7.9640 2.9325 -1.4313 20 6 9.1334 1.4040 -2.3739 21 7 9.4188 0.1196 -2.4097 22 14 9.8982 2.5657 -3.6209 23 1 9.4197 3.9485 -3.3676 24 1 11.3772 2.5232 -3.4948 25 1 9.5061 2.1489 -4.9912 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.4740 -2.4868 -0.2033 30 1 1.7118 -4.6066 -0.2017 31 1 4.1639 -4.6127 -0.0108 32 1 5.3998 -2.5014 0.2004 33 1 3.9024 0.7036 0.5903 34 1 6.9546 0.6942 2.0956 35 1 7.0545 2.4392 1.7575 36 1 5.4666 1.6620 1.9634 37 1 8.4297 -0.9317 -0.4256 38 1 9.6847 0.2673 -0.0309 39 1 8.4292 -0.1338 1.1655 40 1 10.0260 -0.2238 -3.0836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:41 Heat of formation + Delta-G solvation = -8.658907 kcal Electronic energy + Delta-G solvation = -23438.265648 eV Core-core repulsion = 20026.619776 eV Total energy + Delta-G solvation = -3411.645871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68712 -39.02976 -37.86223 -35.48777 -34.27400 -32.18251 -32.04563 -29.88386 -29.35618 -28.57657 -25.91758 -24.32692 -23.79100 -22.88285 -21.13471 -20.21030 -19.09124 -17.51796 -16.84620 -16.63253 -16.14368 -15.45428 -15.08381 -14.97839 -14.72321 -14.39482 -14.21970 -13.68552 -13.62065 -13.34848 -12.82310 -12.61473 -12.31405 -12.28247 -12.17339 -12.01735 -11.79439 -11.44820 -11.36887 -10.84763 -10.77544 -10.64921 -10.39102 -10.22890 -9.95599 -9.88306 -9.67829 -9.05540 -8.83902 -8.45867 -7.83198 -6.57455 -5.73152 -3.31118 0.67386 1.45623 2.39561 3.29296 3.36453 3.45005 3.47138 3.54219 3.96070 4.00680 4.48374 4.69382 4.84961 5.03160 5.20228 5.22130 5.31785 5.38560 5.39359 5.49617 5.56433 5.66238 5.81803 5.90161 5.93833 6.05095 6.21860 6.26703 6.35923 6.54334 6.56789 6.67915 6.71135 6.94180 7.17951 7.42122 7.45687 7.81897 7.89022 7.97643 8.45706 8.82921 9.24392 9.81928 10.38009 11.30396 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.004466 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.838129 B = 6268.023264 C = 6675.824640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.399 3.601 3 O -0.470 6.470 4 C -0.232 4.232 5 C -0.053 4.053 6 C -0.171 4.171 7 C -0.061 4.061 8 C -0.154 4.154 9 C 0.234 3.766 10 N -0.673 5.673 11 C 0.482 3.518 12 O -0.486 6.486 13 C 0.156 3.844 14 H 0.091 0.909 15 C -0.155 4.155 16 N -0.565 5.565 17 C 0.160 3.840 18 C -0.275 4.275 19 H 0.067 0.933 20 C 0.019 3.981 21 N -0.884 5.884 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.153 0.847 33 H 0.416 0.584 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.038 0.962 38 H 0.047 0.953 39 H -0.007 1.007 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.560 -4.774 8.240 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.280 3.720 3 O -0.347 6.347 4 C -0.237 4.237 5 C -0.071 4.071 6 C -0.190 4.190 7 C -0.080 4.080 8 C -0.175 4.175 9 C 0.133 3.867 10 N -0.323 5.323 11 C 0.269 3.731 12 O -0.357 6.357 13 C 0.042 3.958 14 H 0.109 0.891 15 C -0.215 4.215 16 N -0.285 5.285 17 C 0.016 3.984 18 C -0.405 4.405 19 H 0.085 0.915 20 C -0.183 4.183 21 N -0.525 5.525 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.214 1.214 25 H -0.215 1.215 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.259 0.741 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.011 0.989 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.570 -4.891 7.728 18.926 hybrid contribution 0.029 0.573 -0.784 0.971 sum -16.541 -4.317 6.945 18.451 Atomic orbital electron populations 1.22194 0.93846 1.04654 1.04804 1.22313 0.91685 0.87392 0.70560 1.90388 1.71421 1.34577 1.38315 1.20178 0.92766 0.95487 1.15255 1.21199 0.99418 0.91051 0.95480 1.20966 0.94394 0.97852 1.05826 1.21313 0.94098 0.98006 0.94587 1.21578 1.02475 0.90353 1.03076 1.18254 0.89755 0.87602 0.91079 1.44821 1.13503 1.11826 1.62159 1.23703 0.80102 0.92815 0.76485 1.90643 1.69106 1.38228 1.37726 1.20651 0.87649 0.92710 0.94784 0.89090 1.22180 1.00535 1.02455 0.96312 1.43715 1.05228 1.36289 1.43219 1.20833 0.94180 0.92133 0.91293 1.19178 1.26054 0.90582 1.04665 0.91523 1.25433 1.00582 0.95414 0.96847 1.70071 1.36129 1.11468 1.34819 0.86232 0.78723 0.80415 0.81443 1.20032 1.21446 1.21503 0.89859 0.88863 0.88894 0.85102 0.85818 0.85546 0.82965 0.74098 0.92660 0.91383 0.93404 0.94325 0.93448 0.98902 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 10.19 36.00 0.37 -1.15 16 2 C 0.40 5.00 7.20 -30.86 -0.22 4.78 16 3 O -0.47 -7.32 14.57 5.54 0.08 -7.23 16 4 C -0.23 -3.16 5.88 -104.91 -0.62 -3.77 16 5 C -0.05 -0.56 9.42 -39.12 -0.37 -0.93 16 6 C -0.17 -1.84 10.02 -39.63 -0.40 -2.24 16 7 C -0.06 -0.79 10.03 -39.51 -0.40 -1.19 16 8 C -0.15 -2.57 8.70 -39.44 -0.34 -2.91 16 9 C 0.23 3.93 6.43 -83.44 -0.54 3.39 16 10 N -0.67 -12.12 4.70 -9.65 -0.05 -12.17 16 11 C 0.48 10.43 6.84 -10.99 -0.08 10.35 16 12 O -0.49 -12.30 11.80 5.56 0.07 -12.23 16 13 C 0.16 3.36 3.13 -69.08 -0.22 3.14 16 14 H 0.09 1.93 7.89 -51.93 -0.41 1.52 16 15 C -0.16 -2.69 9.06 37.16 0.34 -2.35 16 16 N -0.56 -14.74 2.54 -174.81 -0.44 -15.18 16 17 C 0.16 4.16 7.96 59.85 0.48 4.63 16 18 C -0.27 -7.75 9.45 -15.06 -0.14 -7.89 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 20 C 0.02 0.54 5.18 -17.43 -0.09 0.45 16 21 N -0.88 -26.80 11.13 55.49 0.62 -26.18 16 22 Si 0.90 22.15 29.56 -169.99 -5.02 17.12 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H 0.08 0.45 5.63 -51.93 -0.29 0.16 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.13 0.90 5.97 -52.49 -0.31 0.59 16 30 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.15 2.93 5.82 -52.49 -0.31 2.62 16 33 H 0.42 6.89 5.63 -40.82 -0.23 6.66 16 34 H 0.05 0.97 6.69 -51.93 -0.35 0.62 16 35 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 36 H 0.05 0.68 7.70 -51.93 -0.40 0.28 16 37 H 0.04 1.11 6.56 -51.93 -0.34 0.77 16 38 H 0.05 1.30 7.27 -51.93 -0.38 0.92 16 39 H -0.01 -0.17 6.45 -51.93 -0.33 -0.51 16 40 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -34.35 327.40 -7.05 -41.41 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.01 Total: 5.23 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.23 Total: 4.30 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.13 Total: -53.53 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.15 Total: -19.46 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.35 -7.05 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.747 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds