Wall clock time and date at job start Tue Mar 31 2020 06:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21305 * 120.00109 * 2 1 4 4 C 1.46770 * 120.00153 * 180.02562 * 2 1 3 5 5 C 1.39997 * 120.22742 * 5.39089 * 4 2 1 6 6 C 1.37686 * 119.89049 * 180.02562 * 5 4 2 7 7 C 1.38641 * 120.36907 * 359.75071 * 6 5 4 8 8 C 1.38014 * 120.47164 * 0.51062 * 7 6 5 9 9 C 1.38830 * 120.09378 * 359.49098 * 8 7 6 10 10 N 1.39144 * 120.18715 * 180.23080 * 9 8 7 11 11 C 1.34777 * 119.99770 * 25.26649 * 10 9 8 12 12 O 1.21273 * 120.00242 * 5.72642 * 11 10 9 13 13 C 1.50698 * 120.00053 * 185.72918 * 11 10 9 14 14 H 1.09000 * 109.47133 * 299.99449 * 13 11 10 15 15 C 1.53000 * 109.47235 * 59.99904 * 13 11 10 16 16 N 1.46504 * 109.47324 * 179.97438 * 13 11 10 17 17 C 1.46503 * 119.99942 * 300.00363 * 16 13 11 18 18 C 1.36935 * 119.99928 * 119.99653 * 16 13 11 19 19 H 1.08000 * 120.00040 * 34.58720 * 18 16 13 20 20 C 1.38813 * 119.99912 * 214.57961 * 18 16 13 21 21 N 1.31617 * 120.00228 * 5.19625 * 20 18 16 22 22 Si 1.86801 * 119.99996 * 185.18955 * 20 18 16 23 23 H 1.48499 * 109.47199 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47085 * 120.00542 * 22 20 18 25 25 H 1.48500 * 109.47009 * 240.00372 * 22 20 18 26 26 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46952 * 299.99722 * 1 2 3 28 28 H 1.08998 * 109.47174 * 59.99763 * 1 2 3 29 29 H 1.07997 * 120.05974 * 0.02562 * 5 4 2 30 30 H 1.08004 * 119.81385 * 179.97438 * 6 5 4 31 31 H 1.08002 * 119.76564 * 180.27623 * 7 6 5 32 32 H 1.08001 * 119.95333 * 179.76129 * 8 7 6 33 33 H 0.96999 * 120.00663 * 205.26265 * 10 9 8 34 34 H 1.09000 * 109.47432 * 59.99728 * 15 13 11 35 35 H 1.09007 * 109.47054 * 180.02562 * 15 13 11 36 36 H 1.09001 * 109.46905 * 300.00032 * 15 13 11 37 37 H 1.08991 * 109.47351 * 85.06134 * 17 16 13 38 38 H 1.09003 * 109.46931 * 205.06425 * 17 16 13 39 39 H 1.09005 * 109.46898 * 325.06042 * 17 16 13 40 40 H 0.96999 * 120.00409 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2710 -0.0006 5 6 1.5504 -2.4835 -0.1148 6 6 2.2457 -3.6719 -0.1140 7 6 3.6279 -3.6751 -0.0059 8 6 4.3234 -2.4889 0.1129 9 6 3.6419 -1.2795 0.1142 10 7 4.3415 -0.0822 0.2290 11 6 5.6296 -0.0143 -0.1619 12 8 6.1482 -0.9644 -0.7088 13 6 6.4254 1.2422 0.0805 14 1 5.9500 2.0781 -0.4329 15 6 6.4793 1.5300 1.5822 16 7 7.7866 1.0646 -0.4313 17 6 8.6370 -0.0017 0.1036 18 6 8.2639 1.8952 -1.4098 19 1 7.9640 2.9325 -1.4313 20 6 9.1334 1.4040 -2.3739 21 7 9.4188 0.1196 -2.4097 22 14 9.8982 2.5657 -3.6209 23 1 9.4197 3.9485 -3.3676 24 1 11.3772 2.5232 -3.4948 25 1 9.5061 2.1489 -4.9912 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.4740 -2.4868 -0.2033 30 1 1.7118 -4.6066 -0.2017 31 1 4.1639 -4.6127 -0.0108 32 1 5.3998 -2.5014 0.2004 33 1 3.9024 0.7036 0.5903 34 1 6.9546 0.6942 2.0956 35 1 7.0545 2.4392 1.7575 36 1 5.4666 1.6620 1.9634 37 1 8.4297 -0.9317 -0.4256 38 1 9.6847 0.2673 -0.0309 39 1 8.4292 -0.1338 1.1655 40 1 10.0260 -0.2238 -3.0836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:40 Heat of formation + Delta-G solvation = -31.434252 kcal Electronic energy + Delta-G solvation = -23439.253261 eV Core-core repulsion = 20026.619776 eV Total energy + Delta-G solvation = -3412.633485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.95731 -40.38797 -38.99620 -37.34302 -35.77231 -34.08974 -33.04589 -31.52002 -30.31313 -29.85971 -28.03959 -25.98818 -24.82441 -24.46644 -22.65355 -21.34428 -20.54891 -19.03877 -18.59186 -17.84190 -17.54216 -17.01547 -16.66565 -16.06686 -15.98236 -15.78956 -15.40012 -15.31045 -14.96582 -14.81105 -14.57555 -14.08855 -13.77751 -13.48042 -13.18877 -13.00351 -12.96384 -12.94121 -12.80818 -12.70738 -12.49761 -12.40699 -12.32103 -11.94710 -11.85839 -11.53516 -10.86440 -10.67204 -10.45533 -9.97324 -9.06846 -8.67900 -7.88849 -5.51062 -0.35975 0.36881 1.42233 1.42752 1.43774 1.55426 1.72538 2.11863 2.46116 2.87059 3.12679 3.27801 3.54420 3.76326 3.88619 4.07951 4.18414 4.27712 4.34232 4.42472 4.45471 4.56203 4.67360 4.70493 4.70959 4.88838 4.95104 5.02694 5.13081 5.17082 5.25903 5.32969 5.36285 5.51951 5.55281 5.60633 5.74823 6.01758 6.29081 6.45400 6.58483 7.08326 7.24561 7.75252 8.26708 9.14143 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.004466 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.838129 B = 6268.023264 C = 6675.824640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.395 3.605 3 O -0.509 6.509 4 C -0.237 4.237 5 C -0.037 4.037 6 C -0.156 4.156 7 C -0.065 4.065 8 C -0.185 4.185 9 C 0.190 3.810 10 N -0.662 5.662 11 C 0.483 3.517 12 O -0.535 6.535 13 C 0.148 3.852 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.583 5.583 17 C 0.182 3.818 18 C -0.285 4.285 19 H 0.075 0.925 20 C -0.041 4.041 21 N -0.925 5.925 22 Si 0.973 3.027 23 H -0.259 1.259 24 H -0.285 1.285 25 H -0.294 1.294 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.183 0.817 30 H 0.168 0.832 31 H 0.143 0.857 32 H 0.112 0.888 33 H 0.422 0.578 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.001 0.999 38 H 0.023 0.977 39 H 0.019 0.981 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.582 -4.833 8.801 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.279 3.721 3 O -0.389 6.389 4 C -0.241 4.241 5 C -0.055 4.055 6 C -0.174 4.174 7 C -0.084 4.084 8 C -0.206 4.206 9 C 0.091 3.909 10 N -0.313 5.313 11 C 0.270 3.730 12 O -0.409 6.409 13 C 0.036 3.964 14 H 0.110 0.890 15 C -0.200 4.200 16 N -0.304 5.304 17 C 0.037 3.963 18 C -0.415 4.415 19 H 0.093 0.907 20 C -0.238 4.238 21 N -0.568 5.568 22 Si 0.800 3.200 23 H -0.182 1.182 24 H -0.212 1.212 25 H -0.221 1.221 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.200 0.800 30 H 0.186 0.814 31 H 0.161 0.839 32 H 0.130 0.870 33 H 0.266 0.734 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.019 0.981 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.681 -4.941 8.334 22.838 hybrid contribution 1.049 0.478 -0.879 1.450 sum -19.632 -4.463 7.455 21.469 Atomic orbital electron populations 1.22233 0.89251 1.07069 1.05947 1.23057 0.94039 0.86149 0.68870 1.90371 1.72681 1.35688 1.40142 1.20604 0.91368 0.97782 1.14314 1.21800 1.01772 0.89408 0.92492 1.21491 0.93155 0.99910 1.02859 1.21600 0.95724 0.97209 0.93844 1.21406 1.01008 0.92309 1.05849 1.18552 0.91459 0.86654 0.94239 1.44342 1.12218 1.12879 1.61882 1.23313 0.81371 0.92046 0.76229 1.90645 1.70430 1.39645 1.40221 1.20834 0.85709 0.92649 0.97178 0.88999 1.22043 1.02708 1.02407 0.92835 1.43826 1.07343 1.35936 1.43334 1.20451 0.92927 0.90675 0.92251 1.19590 1.25855 0.91374 1.04679 0.90744 1.26273 1.01618 0.96928 0.98990 1.70276 1.37278 1.13523 1.35713 0.85132 0.77659 0.78989 0.78203 1.18242 1.21187 1.22080 0.86834 0.87238 0.87935 0.80020 0.81443 0.83903 0.86973 0.73402 0.93182 0.90668 0.90120 0.98077 0.95802 0.96235 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 10.19 71.24 0.73 -1.27 16 2 C 0.40 8.93 7.20 27.92 0.20 9.13 16 3 O -0.51 -15.40 14.57 -3.11 -0.05 -15.44 16 4 C -0.24 -5.92 5.88 -20.05 -0.12 -6.04 16 5 C -0.04 -0.60 9.42 22.57 0.21 -0.39 16 6 C -0.16 -2.68 10.02 22.24 0.22 -2.46 16 7 C -0.07 -1.62 10.03 22.31 0.22 -1.40 16 8 C -0.19 -6.45 8.70 22.36 0.19 -6.26 16 9 C 0.19 6.47 6.43 38.69 0.25 6.72 16 10 N -0.66 -24.71 4.70 -302.84 -1.42 -26.14 16 11 C 0.48 22.04 6.84 87.66 0.60 22.64 16 12 O -0.53 -29.17 11.80 -3.01 -0.04 -29.21 16 13 C 0.15 6.59 3.13 44.24 0.14 6.73 16 14 H 0.09 4.00 7.89 -2.39 -0.02 3.98 16 15 C -0.14 -4.85 9.06 71.98 0.65 -4.19 16 16 N -0.58 -31.68 2.54 -706.97 -1.80 -33.48 16 17 C 0.18 10.02 7.96 127.77 1.02 11.03 16 18 C -0.28 -16.52 9.45 84.03 0.79 -15.73 16 19 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 20 C -0.04 -2.42 5.18 84.86 0.44 -1.98 16 21 N -0.92 -58.97 11.13 21.65 0.24 -58.73 16 22 Si 0.97 46.81 29.56 68.60 2.03 48.84 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 26 H 0.11 0.47 5.63 -2.39 -0.01 0.46 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.18 1.13 5.97 -2.91 -0.02 1.11 16 30 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.11 4.79 5.82 -2.91 -0.02 4.78 16 33 H 0.42 14.22 5.63 -92.71 -0.52 13.70 16 34 H 0.05 1.76 6.69 -2.39 -0.02 1.75 16 35 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.08 2.22 7.70 -2.39 -0.02 2.20 16 37 H 0.00 0.05 6.56 -2.39 -0.02 0.04 16 38 H 0.02 1.37 7.27 -2.39 -0.02 1.35 16 39 H 0.02 0.94 6.45 -2.38 -0.02 0.92 16 40 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -82.30 327.40 5.07 -77.23 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.55 Total: 20.40 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 5.55 Total: 16.53 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -2.98 Total: -118.35 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.08 Total: -44.65 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -82.30 5.07 -77.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.799 kcal (2) G-P(sol) polarization free energy of solvation -82.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds