Wall clock time and date at job start Tue Mar 31 2020 06:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47244 * 2 1 4 4 C 1.50707 * 109.46978 * 119.99941 * 2 1 3 5 5 H 1.08006 * 119.99580 * 92.11599 * 4 2 1 6 6 C 1.37872 * 119.99842 * 272.11196 * 4 2 1 7 7 N 1.31520 * 119.99790 * 173.58006 * 6 4 2 8 8 Si 1.86801 * 120.00296 * 353.57684 * 6 4 2 9 9 H 1.48497 * 109.47258 * 274.26109 * 8 6 4 10 10 H 1.48502 * 109.46992 * 34.26090 * 8 6 4 11 11 H 1.48496 * 109.46883 * 154.25807 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00089 * 2 1 3 13 13 C 1.46507 * 119.99826 * 300.00157 * 12 2 1 14 14 C 1.34777 * 120.00325 * 119.99951 * 12 2 1 15 15 O 1.21587 * 119.99627 * 0.02562 * 14 12 2 16 16 N 1.34769 * 120.00001 * 180.02562 * 14 12 2 17 17 C 1.39946 * 120.00036 * 184.62456 * 16 14 12 18 18 C 1.38888 * 120.05342 * 323.98940 * 17 16 14 19 19 C 1.38162 * 119.97009 * 179.76442 * 18 17 16 20 20 C 1.38038 * 120.01217 * 0.51651 * 19 18 17 21 21 C 1.38654 * 120.15072 * 359.73241 * 20 19 18 22 22 C 1.37859 * 120.10700 * 0.02562 * 21 20 19 23 23 C 1.51094 * 107.26860 * 180.02562 * 21 20 19 24 24 O 1.43934 * 105.95563 * 17.70787 * 23 21 20 25 25 C 1.43942 * 104.95571 * 331.52279 * 24 23 21 26 26 H 1.09004 * 109.47139 * 295.71987 * 1 2 3 27 27 H 1.09003 * 109.47282 * 55.71366 * 1 2 3 28 28 H 1.09000 * 109.47480 * 175.72069 * 1 2 3 29 29 H 0.96998 * 119.99774 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47334 * 89.99589 * 13 12 2 31 31 H 1.09002 * 109.47259 * 209.99936 * 13 12 2 32 32 H 1.08997 * 109.47020 * 329.99692 * 13 12 2 33 33 H 0.97000 * 120.00169 * 4.62407 * 16 14 12 34 34 H 1.07999 * 120.01697 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.99375 * 180.25283 * 19 18 17 36 36 H 1.08002 * 120.06457 * 180.02562 * 22 21 20 37 37 H 1.09004 * 110.15217 * 136.82460 * 23 21 20 38 38 H 1.09000 * 110.15403 * 258.58636 * 23 21 20 39 39 H 1.09002 * 110.15462 * 147.59969 * 25 24 23 40 40 H 1.08998 * 110.15044 * 269.28289 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.2448 -1.7688 1.1941 6 6 2.2206 -0.0094 2.4027 7 7 2.5367 -0.6486 3.5077 8 14 2.0267 1.8485 2.4213 9 1 3.3076 2.4839 2.0207 10 1 0.9585 2.2442 1.4686 11 1 1.6596 2.2941 3.7895 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0873 1.1283 -1.8907 16 7 3.2420 -0.6708 -3.1840 17 6 4.1245 -0.0223 -4.0552 18 6 3.9949 1.3406 -4.2893 19 6 4.8701 1.9801 -5.1460 20 6 5.8663 1.2627 -5.7772 21 6 5.9950 -0.0990 -5.5496 22 6 5.1278 -0.7417 -4.6920 23 6 7.1634 -0.5834 -6.3761 24 8 7.9181 0.5924 -6.7218 25 6 6.9517 1.6588 -6.7510 26 1 -0.3633 0.4460 0.9259 27 1 -0.3634 0.5789 -0.8491 28 1 -0.3634 -1.0248 -0.0767 29 1 2.6696 -0.1554 4.3323 30 1 0.7375 -2.1444 -1.9993 31 1 2.4628 -2.5819 -1.9864 32 1 1.5295 -2.5969 -0.4708 33 1 2.9533 -1.5775 -3.3723 34 1 3.2129 1.9011 -3.7986 35 1 4.7722 3.0406 -5.3251 36 1 5.2290 -1.8023 -4.5149 37 1 7.7794 -1.2666 -5.7913 38 1 6.8052 -1.0786 -7.2787 39 1 7.4149 2.5942 -6.4370 40 1 6.5380 1.7632 -7.7541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092149870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:39 Heat of formation + Delta-G solvation = -23.801059 kcal Electronic energy + Delta-G solvation = -22920.538746 eV Core-core repulsion = 19508.236261 eV Total energy + Delta-G solvation = -3412.302484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89402 -39.86677 -37.53628 -35.60317 -34.41305 -32.67027 -31.55492 -30.76821 -29.56583 -27.74151 -26.37239 -25.28177 -24.51130 -22.56108 -21.83318 -20.65688 -19.21484 -18.00731 -17.19628 -16.73426 -16.56924 -16.29861 -15.76509 -15.25663 -15.02576 -14.42335 -14.21451 -13.89262 -13.51555 -13.33891 -12.96486 -12.84556 -12.75554 -12.48442 -12.35593 -12.24797 -11.91965 -11.69314 -11.42843 -11.22181 -11.09673 -10.74778 -10.50677 -10.32436 -9.87286 -9.81761 -9.49784 -9.31052 -8.82667 -8.62430 -8.06176 -7.67128 -6.20154 -4.21990 1.22282 1.31266 2.95759 3.29965 3.36476 3.43021 3.45875 3.77226 3.84407 4.16725 4.33994 4.36445 4.54679 4.86033 5.15326 5.17357 5.19036 5.23086 5.33312 5.42061 5.47177 5.58695 5.70203 5.80789 5.85978 6.10990 6.19108 6.19976 6.26323 6.33043 6.39578 6.53691 6.57756 6.62051 6.83125 6.87973 7.09182 7.31372 7.47202 7.57668 8.25365 8.46180 8.80306 9.01183 9.42081 10.91783 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.003748 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.296012 B = 7468.073750 C = 7758.344646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.240 3.760 3 H 0.064 0.936 4 C -0.529 4.529 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.873 3.127 9 H -0.271 1.271 10 H -0.262 1.262 11 H -0.287 1.287 12 N -0.598 5.598 13 C 0.081 3.919 14 C 0.698 3.302 15 O -0.582 6.582 16 N -0.693 5.693 17 C 0.186 3.814 18 C -0.115 4.115 19 C -0.073 4.073 20 C -0.161 4.161 21 C -0.117 4.117 22 C -0.127 4.127 23 C 0.095 3.905 24 O -0.364 6.364 25 C 0.096 3.904 26 H 0.059 0.941 27 H 0.026 0.974 28 H 0.048 0.952 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.405 0.595 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -0.878 -19.792 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.139 3.861 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.186 1.186 11 H -0.213 1.213 12 N -0.332 5.332 13 C -0.063 4.063 14 C 0.400 3.600 15 O -0.460 6.460 16 N -0.342 5.342 17 C 0.090 3.910 18 C -0.136 4.136 19 C -0.092 4.092 20 C -0.163 4.163 21 C -0.118 4.118 22 C -0.148 4.148 23 C 0.018 3.982 24 O -0.283 6.283 25 C 0.020 3.980 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.242 0.758 34 H 0.165 0.835 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.138 -0.040 -19.351 19.603 hybrid contribution -0.437 0.258 0.265 0.573 sum 2.701 0.219 -19.086 19.277 Atomic orbital electron populations 1.22271 0.98297 1.00345 0.99778 1.19240 0.90545 0.94690 0.81625 0.91785 1.21114 1.45541 0.97398 0.92653 0.90389 1.24906 0.93793 0.98418 0.95259 1.69889 1.46880 1.36150 0.99848 0.86930 0.79852 0.86085 0.77169 1.19683 1.18601 1.21306 1.47555 1.51006 1.11575 1.23052 1.21616 0.98494 0.83174 1.03037 1.15974 0.79577 0.84998 0.79414 1.90860 1.62508 1.15379 1.77214 1.42894 1.48720 1.18709 1.23914 1.17430 0.90117 0.92388 0.91110 1.21375 1.00842 0.93850 0.97484 1.20263 0.93753 0.99585 0.95585 1.20921 0.99392 0.94986 1.00964 1.20663 0.97921 0.94846 0.98335 1.20005 0.94551 1.00283 0.99936 1.21695 0.90468 0.88814 0.97187 1.89061 1.30581 1.17507 1.91117 1.21671 0.87570 0.91689 0.97102 0.92232 0.95536 0.93291 0.92340 0.93633 0.93096 0.89329 0.75846 0.83477 0.85594 0.85550 0.88595 0.90647 0.88789 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.99 37.16 0.33 -2.71 16 2 C 0.24 5.65 2.19 -69.08 -0.15 5.50 16 3 H 0.06 1.67 4.40 -51.93 -0.23 1.44 16 4 C -0.53 -14.28 8.70 -34.44 -0.30 -14.58 16 5 H 0.08 2.22 6.86 -52.48 -0.36 1.86 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 8 Si 0.87 21.82 26.42 -169.99 -4.49 17.33 16 9 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.26 -6.25 6.40 56.52 0.36 -5.88 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 N -0.60 -12.02 2.75 -181.00 -0.50 -12.52 16 13 C 0.08 1.23 9.11 59.85 0.55 1.78 16 14 C 0.70 14.03 8.12 -86.93 -0.71 13.33 16 15 O -0.58 -13.77 13.16 5.29 0.07 -13.70 16 16 N -0.69 -10.67 5.17 -14.21 -0.07 -10.74 16 17 C 0.19 2.80 6.28 -83.66 -0.53 2.27 16 18 C -0.11 -1.78 8.69 -39.37 -0.34 -2.12 16 19 C -0.07 -0.95 10.03 -39.68 -0.40 -1.35 16 20 C -0.16 -1.99 6.32 -104.34 -0.66 -2.65 16 21 C -0.12 -1.42 6.32 -104.41 -0.66 -2.08 16 22 C -0.13 -1.60 9.96 -39.47 -0.39 -2.00 16 23 C 0.09 0.96 7.63 36.20 0.28 1.23 16 24 O -0.36 -4.30 11.72 -35.23 -0.41 -4.71 16 25 C 0.10 0.98 7.63 36.20 0.28 1.26 16 26 H 0.06 1.26 7.28 -51.93 -0.38 0.88 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.92 7.53 -51.93 -0.39 0.53 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.63 6.44 -51.93 -0.33 0.29 16 32 H 0.09 1.50 6.60 -51.93 -0.34 1.15 16 33 H 0.40 4.84 6.62 -40.82 -0.27 4.57 16 34 H 0.15 2.54 6.29 -52.49 -0.33 2.21 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -33.15 324.56 -7.74 -40.88 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.19 Total: 4.25 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.80 Total: 0.04 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.20 Total: -48.98 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.34 Total: -18.41 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.49 Total: 17.33 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.15 -7.74 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092149870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.082 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds