Wall clock time and date at job start Tue Mar 31 2020 06:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47244 * 2 1 4 4 C 1.50707 * 109.46978 * 119.99941 * 2 1 3 5 5 H 1.08006 * 119.99580 * 92.11599 * 4 2 1 6 6 C 1.37872 * 119.99842 * 272.11196 * 4 2 1 7 7 N 1.31520 * 119.99790 * 173.58006 * 6 4 2 8 8 Si 1.86801 * 120.00296 * 353.57684 * 6 4 2 9 9 H 1.48497 * 109.47258 * 274.26109 * 8 6 4 10 10 H 1.48502 * 109.46992 * 34.26090 * 8 6 4 11 11 H 1.48496 * 109.46883 * 154.25807 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00089 * 2 1 3 13 13 C 1.46507 * 119.99826 * 300.00157 * 12 2 1 14 14 C 1.34777 * 120.00325 * 119.99951 * 12 2 1 15 15 O 1.21587 * 119.99627 * 0.02562 * 14 12 2 16 16 N 1.34769 * 120.00001 * 180.02562 * 14 12 2 17 17 C 1.39946 * 120.00036 * 184.62456 * 16 14 12 18 18 C 1.38888 * 120.05342 * 323.98940 * 17 16 14 19 19 C 1.38162 * 119.97009 * 179.76442 * 18 17 16 20 20 C 1.38038 * 120.01217 * 0.51651 * 19 18 17 21 21 C 1.38654 * 120.15072 * 359.73241 * 20 19 18 22 22 C 1.37859 * 120.10700 * 0.02562 * 21 20 19 23 23 C 1.51094 * 107.26860 * 180.02562 * 21 20 19 24 24 O 1.43934 * 105.95563 * 17.70787 * 23 21 20 25 25 C 1.43942 * 104.95571 * 331.52279 * 24 23 21 26 26 H 1.09004 * 109.47139 * 295.71987 * 1 2 3 27 27 H 1.09003 * 109.47282 * 55.71366 * 1 2 3 28 28 H 1.09000 * 109.47480 * 175.72069 * 1 2 3 29 29 H 0.96998 * 119.99774 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47334 * 89.99589 * 13 12 2 31 31 H 1.09002 * 109.47259 * 209.99936 * 13 12 2 32 32 H 1.08997 * 109.47020 * 329.99692 * 13 12 2 33 33 H 0.97000 * 120.00169 * 4.62407 * 16 14 12 34 34 H 1.07999 * 120.01697 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.99375 * 180.25283 * 19 18 17 36 36 H 1.08002 * 120.06457 * 180.02562 * 22 21 20 37 37 H 1.09004 * 110.15217 * 136.82460 * 23 21 20 38 38 H 1.09000 * 110.15403 * 258.58636 * 23 21 20 39 39 H 1.09002 * 110.15462 * 147.59969 * 25 24 23 40 40 H 1.08998 * 110.15044 * 269.28289 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.2448 -1.7688 1.1941 6 6 2.2206 -0.0094 2.4027 7 7 2.5367 -0.6486 3.5077 8 14 2.0267 1.8485 2.4213 9 1 3.3076 2.4839 2.0207 10 1 0.9585 2.2442 1.4686 11 1 1.6596 2.2941 3.7895 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0873 1.1283 -1.8907 16 7 3.2420 -0.6708 -3.1840 17 6 4.1245 -0.0223 -4.0552 18 6 3.9949 1.3406 -4.2893 19 6 4.8701 1.9801 -5.1460 20 6 5.8663 1.2627 -5.7772 21 6 5.9950 -0.0990 -5.5496 22 6 5.1278 -0.7417 -4.6920 23 6 7.1634 -0.5834 -6.3761 24 8 7.9181 0.5924 -6.7218 25 6 6.9517 1.6588 -6.7510 26 1 -0.3633 0.4460 0.9259 27 1 -0.3634 0.5789 -0.8491 28 1 -0.3634 -1.0248 -0.0767 29 1 2.6696 -0.1554 4.3323 30 1 0.7375 -2.1444 -1.9993 31 1 2.4628 -2.5819 -1.9864 32 1 1.5295 -2.5969 -0.4708 33 1 2.9533 -1.5775 -3.3723 34 1 3.2129 1.9011 -3.7986 35 1 4.7722 3.0406 -5.3251 36 1 5.2290 -1.8023 -4.5149 37 1 7.7794 -1.2666 -5.7913 38 1 6.8052 -1.0786 -7.2787 39 1 7.4149 2.5942 -6.4370 40 1 6.5380 1.7632 -7.7541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092149870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:39 Heat of formation + Delta-G solvation = -46.257912 kcal Electronic energy + Delta-G solvation = -22921.512548 eV Core-core repulsion = 19508.236261 eV Total energy + Delta-G solvation = -3413.276287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00253 -41.11647 -38.67357 -37.18195 -35.76279 -34.60830 -32.52812 -32.32410 -30.79259 -28.63950 -27.73476 -27.25461 -25.51260 -23.92747 -22.76857 -22.04697 -20.68612 -19.52884 -18.89098 -18.15310 -17.49925 -17.17684 -17.16492 -16.68836 -16.32431 -16.05303 -15.36620 -15.09780 -14.86835 -14.54457 -14.48386 -14.15887 -14.09010 -13.90383 -13.60349 -13.37266 -13.18300 -13.08739 -12.96643 -12.68792 -12.63365 -12.32438 -12.17921 -11.80162 -11.42922 -11.30016 -11.08888 -10.78170 -10.74755 -9.82841 -9.49969 -8.93487 -8.37449 -6.40621 0.17059 0.30900 1.27192 1.34329 1.41900 1.60348 2.06996 2.27689 2.70098 2.87900 2.98885 3.08696 3.33216 3.67075 3.93991 4.23951 4.28279 4.33636 4.45679 4.46218 4.48548 4.60878 4.62701 4.69301 4.74117 4.78583 4.80054 4.88906 4.95010 5.13440 5.16173 5.22442 5.28760 5.36900 5.47085 5.52845 5.74668 5.75167 5.89773 5.98518 6.31013 6.63837 6.96226 7.24604 7.51777 8.77850 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.003748 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.296012 B = 7468.073750 C = 7758.344646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.242 3.758 3 H 0.038 0.962 4 C -0.522 4.522 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.934 5.934 8 Si 0.923 3.077 9 H -0.287 1.287 10 H -0.245 1.245 11 H -0.277 1.277 12 N -0.607 5.607 13 C 0.076 3.924 14 C 0.693 3.307 15 O -0.625 6.625 16 N -0.674 5.674 17 C 0.159 3.841 18 C -0.138 4.138 19 C -0.078 4.078 20 C -0.164 4.164 21 C -0.122 4.122 22 C -0.120 4.120 23 C 0.095 3.905 24 O -0.381 6.381 25 C 0.096 3.904 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.268 0.732 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.421 0.579 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -1.403 -22.445 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.139 3.861 3 H 0.056 0.944 4 C -0.561 4.561 5 H 0.073 0.927 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.748 3.252 9 H -0.214 1.214 10 H -0.169 1.169 11 H -0.202 1.202 12 N -0.341 5.341 13 C -0.066 4.066 14 C 0.395 3.605 15 O -0.506 6.506 16 N -0.325 5.325 17 C 0.064 3.936 18 C -0.159 4.159 19 C -0.096 4.096 20 C -0.165 4.165 21 C -0.123 4.123 22 C -0.141 4.141 23 C 0.019 3.981 24 O -0.300 6.300 25 C 0.020 3.980 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.262 0.738 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.171 0.829 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.378 -0.613 -22.060 22.325 hybrid contribution -0.429 0.359 0.946 1.099 sum 2.949 -0.254 -21.114 21.320 Atomic orbital electron populations 1.22119 0.95761 1.01823 1.00173 1.18989 0.92346 0.93119 0.81673 0.94403 1.21380 1.44201 0.96536 0.93968 0.92715 1.25567 0.94213 1.01992 0.95205 1.69990 1.49227 1.37594 1.00517 0.86129 0.79439 0.81784 0.77835 1.21357 1.16891 1.20222 1.47396 1.51230 1.13296 1.22154 1.21857 1.01277 0.80446 1.03003 1.16121 0.79357 0.84647 0.80334 1.90831 1.63955 1.17429 1.78402 1.42537 1.48293 1.19115 1.22524 1.17647 0.91321 0.92594 0.92081 1.21301 1.01380 0.94411 0.98790 1.20414 0.93516 1.00602 0.95081 1.21266 0.99211 0.95279 1.00716 1.21057 0.98236 0.95007 0.97991 1.20196 0.93445 1.01433 0.99011 1.21885 0.89642 0.88533 0.98037 1.89050 1.31409 1.18314 1.91259 1.21833 0.86758 0.91743 0.97669 0.93074 0.93640 0.91521 0.92268 0.90427 0.89956 0.91204 0.73849 0.86143 0.83823 0.82950 0.87288 0.88139 0.87688 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 8.99 71.98 0.65 -4.93 16 2 C 0.24 11.35 2.19 44.25 0.10 11.45 16 3 H 0.04 1.99 4.40 -2.39 -0.01 1.98 16 4 C -0.52 -28.64 8.70 25.60 0.22 -28.42 16 5 H 0.05 3.20 6.86 -2.91 -0.02 3.18 16 6 C 0.03 1.71 5.47 84.65 0.46 2.18 16 7 N -0.93 -56.85 13.96 21.45 0.30 -56.56 16 8 Si 0.92 45.78 26.42 68.60 1.81 47.59 16 9 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 10 H -0.25 -11.40 6.40 99.48 0.64 -10.76 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 N -0.61 -23.97 2.75 -844.83 -2.33 -26.30 16 13 C 0.08 2.19 9.11 127.77 1.16 3.35 16 14 C 0.69 27.73 8.12 179.06 1.45 29.18 16 15 O -0.63 -30.29 13.16 -3.99 -0.05 -30.35 16 16 N -0.67 -19.95 5.17 -317.13 -1.64 -21.59 16 17 C 0.16 4.63 6.28 38.16 0.24 4.87 16 18 C -0.14 -4.31 8.69 22.41 0.19 -4.12 16 19 C -0.08 -1.96 10.03 22.20 0.22 -1.73 16 20 C -0.16 -3.68 6.32 -19.68 -0.12 -3.81 16 21 C -0.12 -2.65 6.32 -19.73 -0.12 -2.78 16 22 C -0.12 -2.77 9.96 22.34 0.22 -2.54 16 23 C 0.09 1.59 7.63 71.36 0.54 2.13 16 24 O -0.38 -7.84 11.72 -148.98 -1.75 -9.59 16 25 C 0.10 1.68 7.63 71.36 0.54 2.22 16 26 H 0.05 2.10 7.28 -2.39 -0.02 2.08 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 2.38 7.53 -2.39 -0.02 2.36 16 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.80 6.44 -2.39 -0.02 1.79 16 32 H 0.07 2.29 6.60 -2.39 -0.02 2.28 16 33 H 0.42 9.07 6.62 -92.71 -0.61 8.46 16 34 H 0.12 4.38 6.29 -2.91 -0.02 4.36 16 35 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -74.07 324.56 2.50 -71.57 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.39 Total: 18.15 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.77 Total: 7.06 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -3.67 Total: -104.44 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.80 Total: -39.94 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.81 Total: 47.59 kcal Total: -74.07 2.50 -71.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092149870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.309 kcal (2) G-P(sol) polarization free energy of solvation -74.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds