Wall clock time and date at job start Tue Mar 31 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47430 * 2 1 4 4 C 1.50706 * 109.46608 * 240.00200 * 2 1 3 5 5 H 1.08002 * 119.99644 * 245.60135 * 4 2 1 6 6 C 1.37874 * 119.99994 * 65.61387 * 4 2 1 7 7 N 1.31523 * 119.99489 * 198.41108 * 6 4 2 8 8 Si 1.86797 * 120.00384 * 18.67913 * 6 4 2 9 9 H 1.48499 * 109.47003 * 179.72764 * 8 6 4 10 10 H 1.48500 * 109.47195 * 299.73011 * 8 6 4 11 11 H 1.48499 * 109.46774 * 59.72590 * 8 6 4 12 12 N 1.46495 * 109.47091 * 120.00525 * 2 1 3 13 13 C 1.46498 * 120.00357 * 59.99563 * 12 2 1 14 14 C 1.34776 * 119.99726 * 239.99830 * 12 2 1 15 15 O 1.21585 * 120.00273 * 359.97438 * 14 12 2 16 16 N 1.34785 * 120.00022 * 179.97438 * 14 12 2 17 17 C 1.39942 * 120.00145 * 184.82361 * 16 14 12 18 18 C 1.38893 * 120.05330 * 323.03202 * 17 16 14 19 19 C 1.38162 * 119.97126 * 179.76452 * 18 17 16 20 20 C 1.38039 * 120.01135 * 0.51782 * 19 18 17 21 21 C 1.38662 * 120.14902 * 359.73630 * 20 19 18 22 22 C 1.37860 * 120.10867 * 0.02562 * 21 20 19 23 23 C 1.51093 * 107.26845 * 180.02562 * 21 20 19 24 24 O 1.43946 * 105.95287 * 17.70194 * 23 21 20 25 25 C 1.43931 * 104.95480 * 331.52474 * 24 23 21 26 26 H 1.08996 * 109.47370 * 174.39871 * 1 2 3 27 27 H 1.08998 * 109.46540 * 294.39778 * 1 2 3 28 28 H 1.09000 * 109.47054 * 54.39258 * 1 2 3 29 29 H 0.96998 * 120.00085 * 355.22504 * 7 6 4 30 30 H 1.08998 * 109.47538 * 90.00133 * 13 12 2 31 31 H 1.09003 * 109.47336 * 210.00159 * 13 12 2 32 32 H 1.09001 * 109.47284 * 329.99847 * 13 12 2 33 33 H 0.96996 * 119.99849 * 4.82533 * 16 14 12 34 34 H 1.08006 * 120.01756 * 0.02562 * 18 17 16 35 35 H 1.08003 * 119.99492 * 180.25107 * 19 18 17 36 36 H 1.07994 * 120.06652 * 180.02562 * 22 21 20 37 37 H 1.08996 * 110.15599 * 136.82291 * 23 21 20 38 38 H 1.09000 * 110.15538 * 258.58021 * 23 21 20 39 39 H 1.09001 * 110.15224 * 147.60324 * 25 24 23 40 40 H 1.09008 * 110.15177 * 269.28199 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.5765 -1.6383 -1.1341 6 6 1.7972 -0.1757 -2.4795 7 7 1.8984 -0.9342 -3.5492 8 14 1.3422 1.6277 -2.6529 9 1 1.1494 1.9537 -4.0888 10 1 0.0836 1.8943 -1.9114 11 1 2.4322 2.4688 -2.0964 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0873 1.1282 1.8907 16 7 3.2421 -0.6710 3.1840 17 6 3.9614 0.0349 4.1549 18 6 4.8515 1.0307 3.7739 19 6 5.5572 1.7299 4.7341 20 6 5.3857 1.4316 6.0709 21 6 4.5017 0.4343 6.4540 22 6 3.7910 -0.2635 5.5009 23 6 4.5421 0.3543 7.9623 24 8 5.1340 1.5883 8.4083 25 6 5.9977 1.9964 7.3317 26 1 -0.3634 -1.0227 -0.1003 27 1 -0.3632 0.4245 0.9359 28 1 -0.3633 0.5983 -0.8355 29 1 2.2054 -1.8506 -3.4666 30 1 2.4156 -2.7378 0.9716 31 1 1.6238 -2.2853 2.5001 32 1 0.6903 -2.3002 0.9846 33 1 3.0665 -1.6175 3.3032 34 1 4.9889 1.2613 2.7277 35 1 6.2465 2.5071 4.4385 36 1 3.1024 -1.0397 5.8000 37 1 3.5321 0.2567 8.3604 38 1 5.1539 -0.4911 8.2773 39 1 6.0386 3.0841 7.2747 40 1 6.9987 1.5906 7.4789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092149871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:41 Heat of formation + Delta-G solvation = -23.896308 kcal Electronic energy + Delta-G solvation = -22874.387979 eV Core-core repulsion = 19462.081364 eV Total energy + Delta-G solvation = -3412.306615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92775 -39.89918 -37.56966 -35.64316 -34.44328 -32.79205 -31.59029 -30.70401 -29.54192 -27.77542 -26.42811 -24.86462 -24.48075 -22.55162 -21.86233 -20.64606 -19.22602 -17.95883 -17.54763 -16.95024 -16.60102 -16.37575 -15.82196 -15.28758 -15.01573 -14.50436 -14.07724 -13.69174 -13.57784 -13.41876 -13.00025 -12.92943 -12.79069 -12.73919 -12.32733 -12.18160 -11.78403 -11.73616 -11.54749 -11.35955 -11.19467 -10.53371 -10.35951 -10.01492 -9.87013 -9.80067 -9.51532 -9.11792 -8.86368 -8.36433 -8.09533 -7.75008 -6.53747 -4.17843 1.18456 1.27808 2.93784 3.35024 3.42953 3.46692 3.59980 3.73459 3.79664 4.13716 4.31638 4.42474 4.51074 4.82105 5.12314 5.14135 5.17696 5.20092 5.30350 5.37938 5.40480 5.55339 5.67196 5.80505 5.84281 6.06139 6.15652 6.17205 6.26505 6.35643 6.37704 6.53672 6.55930 6.58466 6.82325 6.91139 7.06492 7.32409 7.49586 7.84416 8.27548 8.37240 8.76674 8.99689 9.50522 10.84064 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.003521 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.515232 B = 7951.143879 C = 8362.555449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.249 3.751 3 H 0.057 0.943 4 C -0.613 4.613 5 H 0.060 0.940 6 C 0.037 3.963 7 N -0.899 5.899 8 Si 1.040 2.960 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.278 1.278 12 N -0.597 5.597 13 C 0.088 3.912 14 C 0.698 3.302 15 O -0.580 6.580 16 N -0.694 5.694 17 C 0.185 3.815 18 C -0.113 4.113 19 C -0.073 4.073 20 C -0.160 4.160 21 C -0.118 4.118 22 C -0.127 4.127 23 C 0.095 3.905 24 O -0.364 6.364 25 C 0.096 3.904 26 H 0.049 0.951 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.268 0.732 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.404 0.596 34 H 0.148 0.852 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -0.509 20.044 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.651 4.651 5 H 0.078 0.922 6 C -0.169 4.169 7 N -0.533 5.533 8 Si 0.868 3.132 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.204 1.204 12 N -0.331 5.331 13 C -0.056 4.056 14 C 0.400 3.600 15 O -0.458 6.458 16 N -0.344 5.344 17 C 0.088 3.912 18 C -0.133 4.133 19 C -0.091 4.091 20 C -0.161 4.161 21 C -0.119 4.119 22 C -0.148 4.148 23 C 0.019 3.981 24 O -0.283 6.283 25 C 0.019 3.981 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.241 0.759 34 H 0.166 0.834 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.992 1.561 18.863 19.344 hybrid contribution 0.352 -2.066 0.854 2.263 sum 4.344 -0.506 19.717 20.196 Atomic orbital electron populations 1.22538 0.98644 1.01221 0.99729 1.19154 0.90247 0.94488 0.81356 0.92568 1.22162 1.41370 1.10577 0.91022 0.92165 1.25675 0.94293 1.05094 0.91818 1.70886 1.41538 1.09340 1.31515 0.84122 0.77514 0.75412 0.76194 1.20922 1.19916 1.20405 1.47300 1.50751 1.11702 1.23356 1.21522 1.02280 0.83083 0.98720 1.15945 0.79597 0.84951 0.79500 1.90867 1.62725 1.15657 1.76502 1.42891 1.57838 1.12717 1.20916 1.17422 0.91889 0.94684 0.87183 1.21406 0.94202 0.96339 1.01359 1.20280 0.99252 0.99244 0.90367 1.20929 1.00395 0.99650 0.95164 1.20663 0.98190 0.97310 0.95735 1.19990 1.01788 1.02884 0.90130 1.21690 0.99483 0.87721 0.89239 1.89059 1.61411 1.39198 1.38612 1.21676 0.93231 1.00457 0.82690 0.93160 0.95404 0.91576 0.92218 0.93022 0.93371 0.90334 0.75866 0.83408 0.85498 0.85641 0.88665 0.90638 0.88747 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.73 37.16 0.32 -3.16 16 2 C 0.25 5.95 2.22 -69.08 -0.15 5.80 16 3 H 0.06 1.47 5.53 -51.93 -0.29 1.19 16 4 C -0.61 -16.65 8.66 -34.44 -0.30 -16.94 16 5 H 0.06 1.74 7.75 -52.49 -0.41 1.34 16 6 C 0.04 1.05 5.33 -17.82 -0.10 0.96 16 7 N -0.90 -26.81 13.70 55.43 0.76 -26.05 16 8 Si 1.04 25.07 26.46 -169.99 -4.50 20.57 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.27 -6.02 5.54 56.52 0.31 -5.71 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.60 -12.17 2.75 -181.00 -0.50 -12.67 16 13 C 0.09 1.39 9.35 59.85 0.56 1.95 16 14 C 0.70 14.04 8.12 -86.91 -0.71 13.33 16 15 O -0.58 -13.64 13.22 5.29 0.07 -13.57 16 16 N -0.69 -10.68 5.17 -14.20 -0.07 -10.76 16 17 C 0.18 2.74 6.27 -83.66 -0.52 2.22 16 18 C -0.11 -1.76 8.69 -39.37 -0.34 -2.10 16 19 C -0.07 -0.94 10.03 -39.68 -0.40 -1.34 16 20 C -0.16 -1.93 6.32 -104.34 -0.66 -2.59 16 21 C -0.12 -1.39 6.32 -104.41 -0.66 -2.05 16 22 C -0.13 -1.55 9.96 -39.47 -0.39 -1.94 16 23 C 0.10 0.91 7.63 36.20 0.28 1.19 16 24 O -0.36 -4.14 11.72 -35.23 -0.41 -4.55 16 25 C 0.10 0.95 7.63 36.20 0.28 1.23 16 26 H 0.05 1.02 6.90 -51.93 -0.36 0.66 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.45 4.90 -51.93 -0.25 1.20 16 29 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 30 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.05 0.56 6.44 -51.93 -0.33 0.23 16 32 H 0.08 1.25 6.54 -51.93 -0.34 0.91 16 33 H 0.40 4.92 6.63 -40.82 -0.27 4.65 16 34 H 0.15 2.65 6.36 -52.48 -0.33 2.32 16 35 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -32.85 322.73 -7.79 -40.63 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.21 Total: 4.97 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.79 Total: -3.44 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.19 Total: -49.48 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.34 Total: -18.12 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -4.50 Total: 20.57 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.85 -7.79 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092149871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.738 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds