Wall clock time and date at job start Tue Mar 31 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47430 * 2 1 4 4 C 1.50706 * 109.46608 * 240.00200 * 2 1 3 5 5 H 1.08002 * 119.99644 * 245.60135 * 4 2 1 6 6 C 1.37874 * 119.99994 * 65.61387 * 4 2 1 7 7 N 1.31523 * 119.99489 * 198.41108 * 6 4 2 8 8 Si 1.86797 * 120.00384 * 18.67913 * 6 4 2 9 9 H 1.48499 * 109.47003 * 179.72764 * 8 6 4 10 10 H 1.48500 * 109.47195 * 299.73011 * 8 6 4 11 11 H 1.48499 * 109.46774 * 59.72590 * 8 6 4 12 12 N 1.46495 * 109.47091 * 120.00525 * 2 1 3 13 13 C 1.46498 * 120.00357 * 59.99563 * 12 2 1 14 14 C 1.34776 * 119.99726 * 239.99830 * 12 2 1 15 15 O 1.21585 * 120.00273 * 359.97438 * 14 12 2 16 16 N 1.34785 * 120.00022 * 179.97438 * 14 12 2 17 17 C 1.39942 * 120.00145 * 184.82361 * 16 14 12 18 18 C 1.38893 * 120.05330 * 323.03202 * 17 16 14 19 19 C 1.38162 * 119.97126 * 179.76452 * 18 17 16 20 20 C 1.38039 * 120.01135 * 0.51782 * 19 18 17 21 21 C 1.38662 * 120.14902 * 359.73630 * 20 19 18 22 22 C 1.37860 * 120.10867 * 0.02562 * 21 20 19 23 23 C 1.51093 * 107.26845 * 180.02562 * 21 20 19 24 24 O 1.43946 * 105.95287 * 17.70194 * 23 21 20 25 25 C 1.43931 * 104.95480 * 331.52474 * 24 23 21 26 26 H 1.08996 * 109.47370 * 174.39871 * 1 2 3 27 27 H 1.08998 * 109.46540 * 294.39778 * 1 2 3 28 28 H 1.09000 * 109.47054 * 54.39258 * 1 2 3 29 29 H 0.96998 * 120.00085 * 355.22504 * 7 6 4 30 30 H 1.08998 * 109.47538 * 90.00133 * 13 12 2 31 31 H 1.09003 * 109.47336 * 210.00159 * 13 12 2 32 32 H 1.09001 * 109.47284 * 329.99847 * 13 12 2 33 33 H 0.96996 * 119.99849 * 4.82533 * 16 14 12 34 34 H 1.08006 * 120.01756 * 0.02562 * 18 17 16 35 35 H 1.08003 * 119.99492 * 180.25107 * 19 18 17 36 36 H 1.07994 * 120.06652 * 180.02562 * 22 21 20 37 37 H 1.08996 * 110.15599 * 136.82291 * 23 21 20 38 38 H 1.09000 * 110.15538 * 258.58021 * 23 21 20 39 39 H 1.09001 * 110.15224 * 147.60324 * 25 24 23 40 40 H 1.09008 * 110.15177 * 269.28199 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.5765 -1.6383 -1.1341 6 6 1.7972 -0.1757 -2.4795 7 7 1.8984 -0.9342 -3.5492 8 14 1.3422 1.6277 -2.6529 9 1 1.1494 1.9537 -4.0888 10 1 0.0836 1.8943 -1.9114 11 1 2.4322 2.4688 -2.0964 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0873 1.1282 1.8907 16 7 3.2421 -0.6710 3.1840 17 6 3.9614 0.0349 4.1549 18 6 4.8515 1.0307 3.7739 19 6 5.5572 1.7299 4.7341 20 6 5.3857 1.4316 6.0709 21 6 4.5017 0.4343 6.4540 22 6 3.7910 -0.2635 5.5009 23 6 4.5421 0.3543 7.9623 24 8 5.1340 1.5883 8.4083 25 6 5.9977 1.9964 7.3317 26 1 -0.3634 -1.0227 -0.1003 27 1 -0.3632 0.4245 0.9359 28 1 -0.3633 0.5983 -0.8355 29 1 2.2054 -1.8506 -3.4666 30 1 2.4156 -2.7378 0.9716 31 1 1.6238 -2.2853 2.5001 32 1 0.6903 -2.3002 0.9846 33 1 3.0665 -1.6175 3.3032 34 1 4.9889 1.2613 2.7277 35 1 6.2465 2.5071 4.4385 36 1 3.1024 -1.0397 5.8000 37 1 3.5321 0.2567 8.3604 38 1 5.1539 -0.4911 8.2773 39 1 6.0386 3.0841 7.2747 40 1 6.9987 1.5906 7.4789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092149871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:41 Heat of formation + Delta-G solvation = -46.249895 kcal Electronic energy + Delta-G solvation = -22875.357303 eV Core-core repulsion = 19462.081364 eV Total energy + Delta-G solvation = -3413.275939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.03007 -41.14268 -38.70050 -37.24402 -35.80138 -34.72982 -32.54235 -32.25871 -30.80196 -28.65093 -27.82874 -26.80570 -25.51799 -23.92946 -22.77773 -22.05635 -20.73307 -19.58928 -19.37244 -18.20671 -17.50220 -17.24032 -17.01032 -16.82146 -16.36779 -15.69278 -15.34717 -15.14151 -14.98063 -14.69313 -14.53983 -14.33286 -13.99725 -13.82397 -13.60220 -13.49653 -13.25170 -13.18273 -13.01367 -12.69692 -12.42365 -12.21444 -11.85219 -11.67319 -11.40926 -11.23435 -11.08089 -10.77227 -10.47385 -9.84841 -9.64403 -9.03108 -8.71437 -6.41147 0.14131 0.29021 1.41013 1.51273 1.57394 1.70671 2.01792 2.40857 2.66684 2.88251 2.98353 3.02550 3.31422 3.65637 3.92032 4.17011 4.26332 4.31071 4.44327 4.45358 4.47807 4.54337 4.61980 4.67830 4.68996 4.71889 4.78859 4.85199 4.89945 5.10407 5.14353 5.20294 5.27547 5.37318 5.45818 5.62741 5.73578 5.76825 5.95832 5.98493 6.07069 6.55604 6.91237 7.30965 7.48553 8.59979 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.003521 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.515232 B = 7951.143879 C = 8362.555449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.250 3.750 3 H 0.032 0.968 4 C -0.608 4.608 5 H 0.031 0.969 6 C -0.008 4.008 7 N -0.929 5.929 8 Si 1.072 2.928 9 H -0.282 1.282 10 H -0.237 1.237 11 H -0.282 1.282 12 N -0.607 5.607 13 C 0.084 3.916 14 C 0.693 3.307 15 O -0.621 6.621 16 N -0.675 5.675 17 C 0.158 3.842 18 C -0.139 4.139 19 C -0.077 4.077 20 C -0.162 4.162 21 C -0.121 4.121 22 C -0.116 4.116 23 C 0.095 3.905 24 O -0.380 6.380 25 C 0.096 3.904 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.255 0.745 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.420 0.580 34 H 0.113 0.887 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.693 -0.583 23.368 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.147 3.853 3 H 0.050 0.950 4 C -0.646 4.646 5 H 0.050 0.950 6 C -0.208 4.208 7 N -0.565 5.565 8 Si 0.894 3.106 9 H -0.208 1.208 10 H -0.162 1.162 11 H -0.208 1.208 12 N -0.341 5.341 13 C -0.058 4.058 14 C 0.395 3.605 15 O -0.502 6.502 16 N -0.326 5.326 17 C 0.063 3.937 18 C -0.160 4.160 19 C -0.096 4.096 20 C -0.163 4.163 21 C -0.122 4.122 22 C -0.136 4.136 23 C 0.020 3.980 24 O -0.299 6.299 25 C 0.020 3.980 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.260 0.740 34 H 0.131 0.869 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.334 1.427 22.250 22.543 hybrid contribution 0.693 -2.093 -0.044 2.205 sum 4.027 -0.666 22.206 22.578 Atomic orbital electron populations 1.22361 0.96218 1.01909 1.00637 1.18873 0.91938 0.93032 0.81500 0.94986 1.22328 1.40175 1.09374 0.92733 0.95047 1.26830 0.94239 1.07907 0.91804 1.70994 1.43977 1.09052 1.32455 0.83716 0.78848 0.71375 0.76623 1.20780 1.16150 1.20835 1.47222 1.51070 1.13292 1.22511 1.21743 1.01877 0.80388 1.01821 1.16109 0.79382 0.84593 0.80373 1.90838 1.64045 1.17690 1.77642 1.42544 1.57101 1.13312 1.19649 1.17628 0.92531 0.95381 0.88143 1.21271 0.96265 0.98144 1.00324 1.20386 0.99231 0.99341 0.90629 1.21263 1.00172 0.99511 0.95327 1.21075 0.97312 0.96598 0.97192 1.20187 1.01684 1.03083 0.88655 1.21891 1.00970 0.87875 0.87313 1.89052 1.61833 1.40039 1.38975 1.21826 0.93747 1.01308 0.81122 0.92312 0.93192 0.92162 0.93522 0.93664 0.88692 0.90354 0.73969 0.86868 0.83990 0.82578 0.86937 0.88300 0.87555 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.29 8.73 71.98 0.63 -5.66 16 2 C 0.25 11.94 2.22 44.25 0.10 12.04 16 3 H 0.03 1.70 5.53 -2.39 -0.01 1.69 16 4 C -0.61 -33.74 8.66 25.60 0.22 -33.52 16 5 H 0.03 1.88 7.75 -2.91 -0.02 1.86 16 6 C -0.01 -0.44 5.33 84.65 0.45 0.02 16 7 N -0.93 -56.87 13.70 21.45 0.29 -56.58 16 8 Si 1.07 50.87 26.46 68.60 1.82 52.68 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.24 -9.86 5.54 99.48 0.55 -9.31 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 12 N -0.61 -24.52 2.75 -844.84 -2.33 -26.84 16 13 C 0.08 2.53 9.35 127.77 1.19 3.73 16 14 C 0.69 27.94 8.12 179.05 1.45 29.39 16 15 O -0.62 -30.12 13.22 -3.99 -0.05 -30.17 16 16 N -0.68 -20.08 5.17 -317.11 -1.64 -21.72 16 17 C 0.16 4.56 6.27 38.17 0.24 4.80 16 18 C -0.14 -4.44 8.69 22.41 0.19 -4.25 16 19 C -0.08 -1.96 10.03 22.20 0.22 -1.74 16 20 C -0.16 -3.54 6.32 -19.68 -0.12 -3.66 16 21 C -0.12 -2.47 6.32 -19.73 -0.12 -2.60 16 22 C -0.12 -2.49 9.96 22.34 0.22 -2.27 16 23 C 0.10 1.46 7.63 71.36 0.54 2.00 16 24 O -0.38 -7.33 11.72 -148.98 -1.75 -9.08 16 25 C 0.10 1.61 7.63 71.36 0.54 2.15 16 26 H 0.06 2.29 6.90 -2.39 -0.02 2.27 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 2.52 4.90 -2.39 -0.01 2.51 16 29 H 0.26 15.72 8.73 -92.71 -0.81 14.92 16 30 H 0.04 1.41 8.09 -2.39 -0.02 1.39 16 31 H 0.09 1.93 6.44 -2.39 -0.02 1.91 16 32 H 0.08 2.37 6.54 -2.39 -0.02 2.35 16 33 H 0.42 9.26 6.63 -92.71 -0.61 8.65 16 34 H 0.11 4.37 6.36 -2.91 -0.02 4.35 16 35 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -74.16 322.73 2.38 -71.79 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.27 Total: 19.48 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.77 Total: 0.44 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -3.67 Total: -105.13 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.80 Total: -39.25 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.82 Total: 52.68 kcal Total: -74.16 2.38 -71.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092149871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.536 kcal (2) G-P(sol) polarization free energy of solvation -74.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds