Wall clock time and date at job start Tue Mar 31 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47411 * 2 1 4 4 C 1.50703 * 109.47219 * 119.99930 * 2 1 3 5 5 H 1.07998 * 120.00351 * 119.99443 * 4 2 1 6 6 C 1.37885 * 119.99635 * 300.00117 * 4 2 1 7 7 N 1.31513 * 119.99836 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00153 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46936 * 90.00013 * 8 6 4 10 10 H 1.48493 * 109.47227 * 209.99981 * 8 6 4 11 11 H 1.48496 * 109.47010 * 330.00442 * 8 6 4 12 12 N 1.46899 * 109.47235 * 239.99629 * 2 1 3 13 13 C 1.46906 * 110.99989 * 183.95531 * 12 2 1 14 14 C 1.46895 * 110.99785 * 60.00213 * 12 2 1 15 15 C 1.50709 * 109.47286 * 189.99820 * 14 12 2 16 16 C 1.32566 * 119.99707 * 125.27217 * 15 14 12 17 17 C 1.47812 * 119.99503 * 179.72863 * 16 15 14 18 18 C 1.39555 * 120.14364 * 342.82947 * 17 16 15 19 19 C 1.37952 * 119.85544 * 179.97438 * 18 17 16 20 20 C 1.38368 * 120.14312 * 0.02562 * 19 18 17 21 21 C 1.38319 * 120.28767 * 0.02562 * 20 19 18 22 22 C 1.38004 * 120.13947 * 359.74131 * 21 20 19 23 23 N 1.48006 * 120.06946 * 180.27523 * 22 21 20 24 24 O 1.21794 * 120.00369 * 7.40699 * 23 22 21 25 25 O 1.21802 * 119.99548 * 187.40868 * 23 22 21 26 26 H 1.08999 * 109.47562 * 300.00023 * 1 2 3 27 27 H 1.08998 * 109.47385 * 60.00136 * 1 2 3 28 28 H 1.08997 * 109.47411 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00478 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.46949 * 296.04625 * 13 12 2 31 31 H 1.08996 * 109.46923 * 56.04993 * 13 12 2 32 32 H 1.09002 * 109.46539 * 176.04799 * 13 12 2 33 33 H 1.09001 * 109.47463 * 70.00187 * 14 12 2 34 34 H 1.08998 * 109.47537 * 309.99664 * 14 12 2 35 35 H 1.08000 * 119.99791 * 305.00660 * 15 14 12 36 36 H 1.07999 * 120.00375 * 359.72845 * 16 15 14 37 37 H 1.07994 * 120.06932 * 359.96398 * 18 17 16 38 38 H 1.08001 * 119.92932 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.85278 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.93025 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9955 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1869 14 6 1.5487 -0.0265 -2.4210 15 6 1.8580 -0.8913 -3.6159 16 6 0.8886 -1.2406 -4.4499 17 6 1.1931 -2.0838 -5.6251 18 6 2.5096 -2.2199 -6.0678 19 6 2.7871 -3.0088 -7.1650 20 6 1.7635 -3.6639 -7.8265 21 6 0.4564 -3.5323 -7.3935 22 6 0.1660 -2.7500 -6.2943 23 7 -1.2324 -2.6152 -5.8286 24 8 -2.1090 -3.2975 -6.3279 25 8 -1.5064 -1.8218 -4.9460 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9025 -0.5283 4.4376 30 1 3.9192 0.2042 -1.2300 31 1 3.8069 -1.2916 -0.2718 32 1 3.8163 -1.3723 -2.0499 33 1 2.0519 0.9345 -2.5280 34 1 0.4722 0.1323 -2.3564 35 1 2.8701 -1.2228 -3.7950 36 1 -0.1235 -0.9092 -4.2708 37 1 3.3093 -1.7086 -5.5527 38 1 3.8054 -3.1146 -7.5089 39 1 1.9860 -4.2800 -8.6852 40 1 -0.3381 -4.0459 -7.9144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:47 Heat of formation + Delta-G solvation = 64.965116 kcal Electronic energy + Delta-G solvation = -22536.001611 eV Core-core repulsion = 19127.548317 eV Total energy + Delta-G solvation = -3408.453294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.24461 -39.68069 -37.63662 -36.68089 -34.67653 -32.68972 -32.24037 -30.85546 -29.84143 -27.25354 -26.20371 -24.61672 -24.19278 -22.99178 -22.24316 -19.87368 -19.31936 -19.07056 -18.59605 -17.54611 -17.02370 -16.65719 -15.76870 -15.26013 -14.95464 -14.71771 -14.34559 -13.98007 -13.72709 -13.35240 -12.94621 -12.87396 -12.63025 -12.33251 -12.11561 -11.75958 -11.64790 -11.42954 -11.16649 -11.04431 -10.96890 -10.70747 -10.63222 -10.32316 -10.24624 -10.13175 -9.89577 -9.50179 -9.04092 -8.60958 -8.55755 -7.42493 -6.08685 -4.07789 -0.35611 0.47182 1.22145 1.35658 2.22190 3.18441 3.27316 3.36013 3.38295 4.06758 4.10936 4.34651 4.38570 4.56729 4.63921 4.80293 4.92350 5.05198 5.23367 5.29607 5.36073 5.54991 5.65353 5.66355 5.77853 5.92215 5.99183 6.02592 6.19637 6.35027 6.41874 6.44244 6.53908 6.62394 6.74700 6.79517 6.86718 7.26002 7.55697 7.65096 7.87200 8.01498 8.61432 8.96686 9.52881 11.03923 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.003540 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.720937 B = 7907.944507 C = 8658.599314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 H -0.001 1.001 4 C -0.508 4.508 5 H 0.083 0.917 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.522 5.522 13 C 0.032 3.968 14 C 0.063 3.937 15 C -0.067 4.067 16 C -0.186 4.186 17 C 0.040 3.960 18 C -0.128 4.128 19 C -0.062 4.062 20 C -0.134 4.134 21 C -0.051 4.051 22 C -0.052 4.052 23 N 0.036 4.964 24 O -0.171 6.171 25 O -0.152 6.152 26 H 0.042 0.958 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.264 0.736 30 H 0.013 0.987 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.165 0.835 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -2.377 -23.908 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 H 0.016 0.984 4 C -0.546 4.546 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.246 5.246 13 C -0.116 4.116 14 C -0.064 4.064 15 C -0.085 4.085 16 C -0.205 4.205 17 C 0.039 3.961 18 C -0.146 4.146 19 C -0.080 4.080 20 C -0.153 4.153 21 C -0.070 4.070 22 C -0.135 4.135 23 N 0.552 4.448 24 O -0.384 6.384 25 O -0.367 6.367 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.182 0.818 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.007 -2.922 -23.902 24.163 hybrid contribution -0.578 1.523 0.331 1.662 sum 1.429 -1.399 -23.571 23.656 Atomic orbital electron populations 1.22230 0.98327 1.01617 0.98363 1.19714 0.91639 0.92605 0.88578 0.98370 1.20968 1.32093 1.13628 0.87881 0.89900 1.24921 0.95767 0.96659 0.95774 1.69873 1.45658 1.40270 0.97902 0.86873 0.80899 0.83712 0.76804 1.20383 1.22505 1.19439 1.62041 1.10011 1.51766 1.00821 1.22322 0.87960 0.99032 1.02263 1.21399 1.01987 0.93952 0.89086 1.23650 0.98000 0.93268 0.93616 1.22586 1.02816 1.00830 0.94263 1.19090 0.91436 0.92031 0.93577 1.21448 0.95012 1.00565 0.97617 1.21540 1.00256 0.92842 0.93368 1.21181 0.91069 1.01482 1.01572 1.20983 0.98728 0.94326 0.92959 1.21146 0.81206 1.09030 1.02116 1.43552 1.03000 0.98912 0.99286 1.94512 1.41671 1.43284 1.58952 1.94410 1.87582 1.31728 1.22991 0.93966 0.94974 0.91865 0.92574 0.96821 0.89555 0.93702 0.94028 0.89344 0.87243 0.81844 0.83556 0.84072 0.83833 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.47 37.15 0.31 -2.96 16 2 C 0.18 4.27 1.65 -68.87 -0.11 4.15 16 3 H 0.00 -0.03 7.20 -51.93 -0.37 -0.40 16 4 C -0.51 -14.04 8.46 -34.44 -0.29 -14.33 16 5 H 0.08 2.48 6.65 -52.49 -0.35 2.13 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 8 Si 0.89 21.89 24.37 -169.99 -4.14 17.75 16 9 H -0.28 -6.70 6.87 56.52 0.39 -6.32 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 12 N -0.52 -10.54 4.61 -237.73 -1.10 -11.64 16 13 C 0.03 0.60 9.09 60.07 0.55 1.14 16 14 C 0.06 1.04 5.23 -4.97 -0.03 1.01 16 15 C -0.07 -0.91 8.55 -36.21 -0.31 -1.22 16 16 C -0.19 -2.51 8.70 -37.57 -0.33 -2.83 16 17 C 0.04 0.47 5.83 -105.01 -0.61 -0.14 16 18 C -0.13 -1.12 9.33 -39.20 -0.37 -1.48 16 19 C -0.06 -0.40 10.03 -39.64 -0.40 -0.80 16 20 C -0.13 -0.87 10.04 -39.50 -0.40 -1.26 16 21 C -0.05 -0.45 9.55 -39.64 -0.38 -0.83 16 22 C -0.05 -0.62 6.86 -79.56 -0.55 -1.17 16 23 N 0.04 0.53 4.45 34.15 0.15 0.68 16 24 O -0.17 -2.52 18.47 -29.46 -0.54 -3.07 16 25 O -0.15 -2.43 15.30 -29.46 -0.45 -2.88 16 26 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 27 H 0.03 0.61 6.20 -51.93 -0.32 0.28 16 28 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 1.80 6.10 -51.93 -0.32 1.49 16 32 H 0.04 0.68 6.64 -51.93 -0.34 0.33 16 33 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.09 1.46 5.50 -51.93 -0.29 1.18 16 35 H 0.11 1.28 5.25 -52.49 -0.28 1.01 16 36 H 0.16 2.39 4.84 -52.60 -0.25 2.14 16 37 H 0.15 1.05 6.51 -52.49 -0.34 0.71 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 40 H 0.15 1.12 7.63 -52.49 -0.40 0.72 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -31.92 323.53 -8.16 -40.08 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.73 Total: -0.53 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -3.00 Total: -18.80 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.17 Total: -37.43 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.99 Total: -5.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.92 -8.16 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.049 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds