Wall clock time and date at job start Tue Mar 31 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47411 * 2 1 4 4 C 1.50703 * 109.47219 * 119.99930 * 2 1 3 5 5 H 1.07998 * 120.00351 * 119.99443 * 4 2 1 6 6 C 1.37885 * 119.99635 * 300.00117 * 4 2 1 7 7 N 1.31513 * 119.99836 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00153 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46936 * 90.00013 * 8 6 4 10 10 H 1.48493 * 109.47227 * 209.99981 * 8 6 4 11 11 H 1.48496 * 109.47010 * 330.00442 * 8 6 4 12 12 N 1.46899 * 109.47235 * 239.99629 * 2 1 3 13 13 C 1.46906 * 110.99989 * 183.95531 * 12 2 1 14 14 C 1.46895 * 110.99785 * 60.00213 * 12 2 1 15 15 C 1.50709 * 109.47286 * 189.99820 * 14 12 2 16 16 C 1.32566 * 119.99707 * 125.27217 * 15 14 12 17 17 C 1.47812 * 119.99503 * 179.72863 * 16 15 14 18 18 C 1.39555 * 120.14364 * 342.82947 * 17 16 15 19 19 C 1.37952 * 119.85544 * 179.97438 * 18 17 16 20 20 C 1.38368 * 120.14312 * 0.02562 * 19 18 17 21 21 C 1.38319 * 120.28767 * 0.02562 * 20 19 18 22 22 C 1.38004 * 120.13947 * 359.74131 * 21 20 19 23 23 N 1.48006 * 120.06946 * 180.27523 * 22 21 20 24 24 O 1.21794 * 120.00369 * 7.40699 * 23 22 21 25 25 O 1.21802 * 119.99548 * 187.40868 * 23 22 21 26 26 H 1.08999 * 109.47562 * 300.00023 * 1 2 3 27 27 H 1.08998 * 109.47385 * 60.00136 * 1 2 3 28 28 H 1.08997 * 109.47411 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00478 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.46949 * 296.04625 * 13 12 2 31 31 H 1.08996 * 109.46923 * 56.04993 * 13 12 2 32 32 H 1.09002 * 109.46539 * 176.04799 * 13 12 2 33 33 H 1.09001 * 109.47463 * 70.00187 * 14 12 2 34 34 H 1.08998 * 109.47537 * 309.99664 * 14 12 2 35 35 H 1.08000 * 119.99791 * 305.00660 * 15 14 12 36 36 H 1.07999 * 120.00375 * 359.72845 * 16 15 14 37 37 H 1.07994 * 120.06932 * 359.96398 * 18 17 16 38 38 H 1.08001 * 119.92932 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.85278 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.93025 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9955 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1869 14 6 1.5487 -0.0265 -2.4210 15 6 1.8580 -0.8913 -3.6159 16 6 0.8886 -1.2406 -4.4499 17 6 1.1931 -2.0838 -5.6251 18 6 2.5096 -2.2199 -6.0678 19 6 2.7871 -3.0088 -7.1650 20 6 1.7635 -3.6639 -7.8265 21 6 0.4564 -3.5323 -7.3935 22 6 0.1660 -2.7500 -6.2943 23 7 -1.2324 -2.6152 -5.8286 24 8 -2.1090 -3.2975 -6.3279 25 8 -1.5064 -1.8218 -4.9460 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9025 -0.5283 4.4376 30 1 3.9192 0.2042 -1.2300 31 1 3.8069 -1.2916 -0.2718 32 1 3.8163 -1.3723 -2.0499 33 1 2.0519 0.9345 -2.5280 34 1 0.4722 0.1323 -2.3564 35 1 2.8701 -1.2228 -3.7950 36 1 -0.1235 -0.9092 -4.2708 37 1 3.3093 -1.7086 -5.5527 38 1 3.8054 -3.1146 -7.5089 39 1 1.9860 -4.2800 -8.6852 40 1 -0.3381 -4.0459 -7.9144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:47 Heat of formation + Delta-G solvation = 44.743386 kcal Electronic energy + Delta-G solvation = -22536.878491 eV Core-core repulsion = 19127.548317 eV Total energy + Delta-G solvation = -3409.330174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.25813 -40.42162 -39.15085 -37.77077 -35.85788 -34.51394 -33.00072 -32.30734 -31.16206 -28.51786 -27.40564 -26.34661 -25.41836 -24.01595 -23.18029 -21.41058 -20.54381 -20.01700 -19.58451 -18.89710 -18.58379 -17.55805 -17.17641 -16.35933 -16.15263 -15.82073 -15.55453 -15.36017 -15.00751 -14.63500 -14.30590 -14.23966 -13.96985 -13.49731 -13.37648 -13.13094 -12.72425 -12.62515 -12.57520 -12.50870 -12.32675 -12.30679 -12.09676 -12.04653 -11.47854 -11.40547 -11.23791 -11.01053 -10.73710 -10.56535 -9.49875 -8.97315 -8.28958 -6.32046 -1.27948 -0.21784 0.32918 0.45425 1.31085 1.32006 1.34228 1.44483 2.31162 2.46982 3.04761 3.19271 3.38923 3.44955 3.78034 3.98117 4.01368 4.06979 4.13248 4.32891 4.44953 4.51860 4.54229 4.63321 4.65476 4.76184 4.82586 4.83180 4.85992 5.01464 5.03635 5.16998 5.21156 5.24327 5.42534 5.56412 5.59476 5.64130 5.72496 5.99849 6.35545 6.52953 6.66498 6.74786 7.32761 8.87164 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.003540 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.720937 B = 7907.944507 C = 8658.599314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.184 3.816 3 H -0.005 1.005 4 C -0.507 4.507 5 H 0.045 0.955 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.268 1.268 10 H -0.297 1.297 11 H -0.250 1.250 12 N -0.539 5.539 13 C 0.037 3.963 14 C 0.066 3.934 15 C -0.077 4.077 16 C -0.180 4.180 17 C 0.013 3.987 18 C -0.128 4.128 19 C -0.045 4.045 20 C -0.116 4.116 21 C -0.057 4.057 22 C -0.075 4.075 23 N 0.036 4.964 24 O -0.176 6.176 25 O -0.200 6.200 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.266 0.734 30 H 0.021 0.979 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.164 0.836 38 H 0.184 0.816 39 H 0.185 0.815 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 -2.302 -27.504 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.076 3.924 3 H 0.012 0.988 4 C -0.546 4.546 5 H 0.063 0.937 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.194 1.194 10 H -0.225 1.225 11 H -0.174 1.174 12 N -0.263 5.263 13 C -0.111 4.111 14 C -0.061 4.061 15 C -0.095 4.095 16 C -0.199 4.199 17 C 0.011 3.989 18 C -0.146 4.146 19 C -0.063 4.063 20 C -0.134 4.134 21 C -0.076 4.076 22 C -0.159 4.159 23 N 0.547 4.453 24 O -0.392 6.392 25 O -0.406 6.406 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.201 0.799 39 H 0.202 0.798 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.205 -2.801 -27.484 27.812 hybrid contribution -0.825 1.312 1.211 1.966 sum 2.380 -1.489 -26.273 26.423 Atomic orbital electron populations 1.22145 0.97193 1.01290 0.99572 1.19528 0.92480 0.91863 0.88493 0.98767 1.21235 1.30949 1.12439 0.89945 0.93687 1.25747 0.97314 0.99900 0.95411 1.70020 1.47758 1.42463 0.98538 0.85888 0.79296 0.80178 0.77257 1.19424 1.22507 1.17417 1.61937 1.11013 1.52224 1.01117 1.22272 0.87128 0.99635 1.02102 1.21390 1.01492 0.94930 0.88310 1.23454 0.99167 0.94123 0.92753 1.22539 1.01867 1.00408 0.95090 1.19150 0.92889 0.93087 0.93761 1.21769 0.93759 1.00752 0.98356 1.22085 1.02296 0.90414 0.91509 1.21733 0.89535 1.00348 1.01823 1.21349 1.00592 0.93723 0.91975 1.21462 0.79277 1.11264 1.03882 1.44026 1.04228 0.98265 0.98826 1.94463 1.42974 1.43051 1.58689 1.94411 1.88434 1.33105 1.24613 0.94631 0.91774 0.93047 0.92522 0.96091 0.93125 0.90002 0.92929 0.90079 0.84918 0.83811 0.81867 0.79857 0.79774 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.32 8.47 71.98 0.61 -5.71 16 2 C 0.18 8.66 1.65 44.17 0.07 8.74 16 3 H -0.01 -0.24 7.20 -2.39 -0.02 -0.26 16 4 C -0.51 -28.97 8.46 25.60 0.22 -28.75 16 5 H 0.04 2.85 6.65 -2.91 -0.02 2.83 16 6 C 0.01 0.79 5.45 84.66 0.46 1.26 16 7 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 8 Si 0.95 45.38 24.37 68.60 1.67 47.05 16 9 H -0.27 -12.39 6.87 99.48 0.68 -11.70 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 12 N -0.54 -21.58 4.61 -906.05 -4.18 -25.76 16 13 C 0.04 1.33 9.09 127.69 1.16 2.49 16 14 C 0.07 2.08 5.23 85.56 0.45 2.53 16 15 C -0.08 -1.97 8.55 24.54 0.21 -1.76 16 16 C -0.18 -4.77 8.70 23.65 0.21 -4.57 16 17 C 0.01 0.28 5.83 -20.12 -0.12 0.16 16 18 C -0.13 -1.75 9.33 22.52 0.21 -1.54 16 19 C -0.05 -0.33 10.03 22.23 0.22 -0.11 16 20 C -0.12 -0.89 10.04 22.32 0.22 -0.66 16 21 C -0.06 -0.86 9.55 22.23 0.21 -0.65 16 22 C -0.08 -1.74 6.86 36.63 0.25 -1.49 16 23 N 0.04 1.09 4.45 -45.87 -0.20 0.89 16 24 O -0.18 -5.30 18.47 18.89 0.35 -4.95 16 25 O -0.20 -6.77 15.30 18.88 0.29 -6.48 16 26 H 0.04 1.58 3.27 -2.39 -0.01 1.57 16 27 H 0.06 2.36 6.20 -2.39 -0.01 2.34 16 28 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 2.19 6.10 -2.39 -0.01 2.17 16 32 H 0.08 2.32 6.64 -2.39 -0.02 2.30 16 33 H 0.05 1.54 8.12 -2.39 -0.02 1.52 16 34 H 0.08 2.64 5.50 -2.39 -0.01 2.62 16 35 H 0.13 2.71 5.25 -2.91 -0.02 2.69 16 36 H 0.14 4.39 4.84 -4.67 -0.02 4.37 16 37 H 0.16 1.62 6.51 -2.91 -0.02 1.60 16 38 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 39 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 40 H 0.16 2.00 7.63 -2.91 -0.02 1.97 16 Total: -1.00 -74.22 323.53 3.59 -70.63 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.98 Total: 7.82 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 4.39 Total: -30.06 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -4.09 Total: -84.01 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.64 Total: -11.42 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.05 kcal Total: -74.22 3.59 -70.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.372 kcal (2) G-P(sol) polarization free energy of solvation -74.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds