Wall clock time and date at job start Tue Mar 31 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21274 * 119.99812 * 2 1 4 4 N 1.34780 * 119.99934 * 179.97438 * 2 1 3 5 5 C 1.39443 * 119.99315 * 184.66364 * 4 2 1 6 6 C 1.39124 * 119.93166 * 33.25603 * 5 4 2 7 7 C 1.37676 * 120.07439 * 180.02562 * 6 5 4 8 8 C 1.39748 * 119.92270 * 359.97438 * 7 6 5 9 9 C 1.47598 * 120.06940 * 179.97438 * 8 7 6 10 10 O 1.21588 * 119.99985 * 335.64773 * 9 8 7 11 11 N 1.34776 * 120.00178 * 155.36893 * 9 8 7 12 12 C 1.46503 * 119.99572 * 355.20871 * 11 9 8 13 13 C 1.46496 * 120.00185 * 175.21426 * 11 9 8 14 14 H 1.08990 * 109.47273 * 359.97438 * 13 11 9 15 15 C 1.53002 * 109.46993 * 239.99737 * 13 11 9 16 16 C 1.50695 * 109.47213 * 120.00147 * 13 11 9 17 17 H 1.08001 * 120.00545 * 359.97438 * 16 13 11 18 18 C 1.37878 * 120.00170 * 179.97438 * 16 13 11 19 19 N 1.31515 * 119.99887 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00326 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47202 * 59.99568 * 20 18 16 22 22 H 1.48495 * 109.47524 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46987 * 300.00024 * 20 18 16 24 24 C 1.39739 * 119.85569 * 0.25116 * 8 7 6 25 25 C 1.37668 * 119.92656 * 359.49398 * 24 8 7 26 26 H 1.09005 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47443 * 300.00519 * 1 2 3 28 28 H 1.09010 * 109.46971 * 60.00710 * 1 2 3 29 29 H 0.96996 * 120.00415 * 4.65998 * 4 2 1 30 30 H 1.08004 * 119.96253 * 359.97438 * 6 5 4 31 31 H 1.07998 * 120.03207 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.46899 * 95.61798 * 12 11 9 33 33 H 1.08996 * 109.47242 * 215.61265 * 12 11 9 34 34 H 1.08997 * 109.47436 * 335.61912 * 12 11 9 35 35 H 1.09002 * 109.46993 * 60.00131 * 15 13 11 36 36 H 1.09000 * 109.47507 * 179.97438 * 15 13 11 37 37 H 1.08998 * 109.47070 * 300.00399 * 15 13 11 38 38 H 0.97001 * 120.00511 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.04036 * 179.74151 * 24 8 7 40 40 H 1.08005 * 119.96497 * 180.25030 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5719 -1.1690 0.0987 6 6 4.2162 -0.1891 0.8471 7 6 5.5894 -0.1878 0.9456 8 6 6.3361 -1.1726 0.2932 9 6 7.8085 -1.1739 0.3962 10 8 8.4016 -0.1415 0.6423 11 7 8.4951 -2.3206 0.2229 12 6 7.7765 -3.5837 0.0368 13 6 9.9600 -2.3041 0.2207 14 1 10.3120 -1.2837 0.3714 15 6 10.4739 -2.8273 -1.1221 16 6 10.4739 -3.1826 1.3320 17 1 9.7790 -3.7011 1.9758 18 6 11.8315 -3.3246 1.5268 19 7 12.6778 -2.6936 0.7425 20 14 12.4686 -4.4141 2.9039 21 1 11.9885 -5.8041 2.6977 22 1 13.9534 -4.3983 2.9010 23 1 11.9702 -3.9066 4.2075 24 6 5.6860 -2.1526 -0.4615 25 6 4.3123 -2.1513 -0.5516 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6984 -2.0059 -0.0673 30 1 3.6385 0.5719 1.3507 31 1 6.0889 0.5735 1.5264 32 1 7.6826 -3.7947 -1.0285 33 1 8.3282 -4.3902 0.5197 34 1 6.7840 -3.5058 0.4805 35 1 10.1021 -2.1919 -1.9260 36 1 11.5638 -2.8147 -1.1240 37 1 10.1218 -3.8478 -1.2732 38 1 13.6329 -2.7931 0.8797 39 1 6.2603 -2.9126 -0.9704 40 1 3.8090 -2.9108 -1.1315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:40 Heat of formation + Delta-G solvation = -22.546423 kcal Electronic energy + Delta-G solvation = -22674.452737 eV Core-core repulsion = 19262.204658 eV Total energy + Delta-G solvation = -3412.248079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77779 -39.55936 -37.76893 -35.39544 -34.96407 -32.97884 -31.23279 -30.94625 -29.66135 -28.29307 -26.41300 -25.21192 -23.58291 -22.93900 -21.06716 -20.66985 -18.86731 -17.93700 -17.32214 -16.73418 -16.22861 -15.80751 -15.56827 -14.78986 -14.68928 -14.50812 -14.03201 -14.00708 -13.43354 -13.35725 -13.03526 -12.93600 -12.56223 -12.45136 -12.42847 -12.18907 -11.62753 -11.48098 -11.06632 -10.88256 -10.78217 -10.64501 -10.48945 -10.26423 -10.14160 -10.10387 -9.19638 -8.99561 -8.86966 -8.41360 -8.15194 -7.57083 -6.05610 -4.13622 0.96217 1.44988 2.25570 2.77418 3.28909 3.34110 3.34809 3.38248 3.91689 4.16170 4.34888 4.41295 4.69087 4.86663 4.94163 4.95803 5.11913 5.25657 5.29816 5.39753 5.48394 5.52199 5.72952 5.93085 6.06493 6.13350 6.20946 6.37503 6.41308 6.54976 6.76751 6.84552 6.95313 7.07004 7.07859 7.43870 7.55429 7.72708 7.78569 8.03042 8.21187 8.52591 8.84485 9.06083 9.52562 10.99765 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.003199 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.173227 B = 8750.820937 C = 8808.692720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.522 6.522 4 N -0.673 5.673 5 C 0.153 3.847 6 C -0.132 4.132 7 C -0.045 4.045 8 C -0.133 4.133 9 C 0.544 3.456 10 O -0.547 6.547 11 N -0.585 5.585 12 C 0.071 3.929 13 C 0.258 3.742 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.084 4.084 25 C -0.158 4.158 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.411 0.589 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.011 0.989 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.264 0.736 39 H 0.152 0.848 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.659 -2.512 -3.082 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.295 3.705 3 O -0.397 6.397 4 N -0.318 5.318 5 C 0.059 3.941 6 C -0.152 4.152 7 C -0.065 4.065 8 C -0.137 4.137 9 C 0.331 3.669 10 O -0.427 6.427 11 N -0.316 5.316 12 C -0.072 4.072 13 C 0.158 3.842 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.103 4.103 25 C -0.178 4.178 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.247 0.753 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.113 0.887 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.169 0.831 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.737 -1.183 -2.978 22.961 hybrid contribution 0.074 -1.200 0.632 1.358 sum -22.663 -2.384 -2.346 22.908 Atomic orbital electron populations 1.21858 0.90729 1.04526 1.05739 1.21037 0.90900 0.83239 0.75317 1.90781 1.70415 1.31189 1.47323 1.43608 1.05409 1.09879 1.72919 1.17883 0.82459 0.97231 0.96547 1.21032 0.94459 0.99848 0.99909 1.21161 0.92673 0.96320 0.96343 1.20249 0.94423 0.97416 1.01634 1.18201 0.86215 0.84324 0.78131 1.90739 1.70318 1.32182 1.49467 1.48130 1.09334 1.05513 1.68589 1.22157 0.97034 0.88353 0.99692 1.18960 0.72119 0.99368 0.93775 0.91807 1.22093 1.04758 0.97671 0.95975 1.21273 0.91770 1.28808 1.14617 0.92250 1.24891 0.96680 0.95841 0.96354 1.69869 1.02551 1.42255 1.37930 0.86546 0.77671 0.80689 0.82413 1.20257 1.21174 1.20228 1.21943 0.93928 0.97444 0.96947 1.20783 0.94015 1.00847 1.02145 0.90325 0.88282 0.88382 0.75318 0.84632 0.84603 0.93377 0.90371 0.91261 0.96972 0.88742 0.95121 0.92617 0.83093 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.39 36.01 0.37 -0.36 16 2 C 0.51 4.73 7.68 -10.98 -0.08 4.65 16 3 O -0.52 -7.47 14.73 5.56 0.08 -7.39 16 4 N -0.67 -5.60 5.32 -9.86 -0.05 -5.65 16 5 C 0.15 1.83 6.28 -83.73 -0.53 1.31 16 6 C -0.13 -1.90 8.63 -39.46 -0.34 -2.25 16 7 C -0.05 -0.75 9.58 -39.22 -0.38 -1.13 16 8 C -0.13 -2.33 5.50 -104.95 -0.58 -2.91 16 9 C 0.54 12.04 7.49 -12.44 -0.09 11.94 16 10 O -0.55 -14.32 15.93 5.29 0.08 -14.24 16 11 N -0.59 -12.82 2.75 -176.48 -0.49 -13.31 16 12 C 0.07 1.19 7.73 59.85 0.46 1.65 16 13 C 0.26 6.69 2.63 -69.09 -0.18 6.51 16 14 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 15 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 16 C -0.53 -14.35 8.04 -34.44 -0.28 -14.62 16 17 H 0.06 1.59 7.24 -52.49 -0.38 1.21 16 18 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.31 11.32 55.43 0.63 -24.69 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.08 -1.16 7.51 -39.23 -0.29 -1.45 16 25 C -0.16 -1.76 9.94 -39.45 -0.39 -2.16 16 26 H 0.08 0.12 7.92 -51.93 -0.41 -0.29 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.38 8.14 -51.92 -0.42 -0.05 16 29 H 0.41 1.78 8.65 -40.82 -0.35 1.43 16 30 H 0.14 1.95 6.37 -52.48 -0.33 1.62 16 31 H 0.14 2.30 7.83 -52.49 -0.41 1.88 16 32 H 0.05 0.69 7.13 -51.93 -0.37 0.32 16 33 H 0.08 1.38 6.96 -51.93 -0.36 1.02 16 34 H 0.07 0.98 5.11 -51.93 -0.27 0.72 16 35 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 37 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.15 1.89 4.43 -52.49 -0.23 1.66 16 40 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -35.23 329.67 -6.88 -42.11 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.02 Total: 2.38 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.07 Total: -0.32 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.09 Total: -43.64 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.17 Total: -21.63 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.23 -6.88 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.562 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds