Wall clock time and date at job start Tue Mar 31 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21274 * 119.99812 * 2 1 4 4 N 1.34780 * 119.99934 * 179.97438 * 2 1 3 5 5 C 1.39443 * 119.99315 * 184.66364 * 4 2 1 6 6 C 1.39124 * 119.93166 * 33.25603 * 5 4 2 7 7 C 1.37676 * 120.07439 * 180.02562 * 6 5 4 8 8 C 1.39748 * 119.92270 * 359.97438 * 7 6 5 9 9 C 1.47598 * 120.06940 * 179.97438 * 8 7 6 10 10 O 1.21588 * 119.99985 * 335.64773 * 9 8 7 11 11 N 1.34776 * 120.00178 * 155.36893 * 9 8 7 12 12 C 1.46503 * 119.99572 * 355.20871 * 11 9 8 13 13 C 1.46496 * 120.00185 * 175.21426 * 11 9 8 14 14 H 1.08990 * 109.47273 * 359.97438 * 13 11 9 15 15 C 1.53002 * 109.46993 * 239.99737 * 13 11 9 16 16 C 1.50695 * 109.47213 * 120.00147 * 13 11 9 17 17 H 1.08001 * 120.00545 * 359.97438 * 16 13 11 18 18 C 1.37878 * 120.00170 * 179.97438 * 16 13 11 19 19 N 1.31515 * 119.99887 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00326 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47202 * 59.99568 * 20 18 16 22 22 H 1.48495 * 109.47524 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46987 * 300.00024 * 20 18 16 24 24 C 1.39739 * 119.85569 * 0.25116 * 8 7 6 25 25 C 1.37668 * 119.92656 * 359.49398 * 24 8 7 26 26 H 1.09005 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47443 * 300.00519 * 1 2 3 28 28 H 1.09010 * 109.46971 * 60.00710 * 1 2 3 29 29 H 0.96996 * 120.00415 * 4.65998 * 4 2 1 30 30 H 1.08004 * 119.96253 * 359.97438 * 6 5 4 31 31 H 1.07998 * 120.03207 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.46899 * 95.61798 * 12 11 9 33 33 H 1.08996 * 109.47242 * 215.61265 * 12 11 9 34 34 H 1.08997 * 109.47436 * 335.61912 * 12 11 9 35 35 H 1.09002 * 109.46993 * 60.00131 * 15 13 11 36 36 H 1.09000 * 109.47507 * 179.97438 * 15 13 11 37 37 H 1.08998 * 109.47070 * 300.00399 * 15 13 11 38 38 H 0.97001 * 120.00511 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.04036 * 179.74151 * 24 8 7 40 40 H 1.08005 * 119.96497 * 180.25030 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5719 -1.1690 0.0987 6 6 4.2162 -0.1891 0.8471 7 6 5.5894 -0.1878 0.9456 8 6 6.3361 -1.1726 0.2932 9 6 7.8085 -1.1739 0.3962 10 8 8.4016 -0.1415 0.6423 11 7 8.4951 -2.3206 0.2229 12 6 7.7765 -3.5837 0.0368 13 6 9.9600 -2.3041 0.2207 14 1 10.3120 -1.2837 0.3714 15 6 10.4739 -2.8273 -1.1221 16 6 10.4739 -3.1826 1.3320 17 1 9.7790 -3.7011 1.9758 18 6 11.8315 -3.3246 1.5268 19 7 12.6778 -2.6936 0.7425 20 14 12.4686 -4.4141 2.9039 21 1 11.9885 -5.8041 2.6977 22 1 13.9534 -4.3983 2.9010 23 1 11.9702 -3.9066 4.2075 24 6 5.6860 -2.1526 -0.4615 25 6 4.3123 -2.1513 -0.5516 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6984 -2.0059 -0.0673 30 1 3.6385 0.5719 1.3507 31 1 6.0889 0.5735 1.5264 32 1 7.6826 -3.7947 -1.0285 33 1 8.3282 -4.3902 0.5197 34 1 6.7840 -3.5058 0.4805 35 1 10.1021 -2.1919 -1.9260 36 1 11.5638 -2.8147 -1.1240 37 1 10.1218 -3.8478 -1.2732 38 1 13.6329 -2.7931 0.8797 39 1 6.2603 -2.9126 -0.9704 40 1 3.8090 -2.9108 -1.1315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:40 Heat of formation + Delta-G solvation = -47.631817 kcal Electronic energy + Delta-G solvation = -22675.540522 eV Core-core repulsion = 19262.204658 eV Total energy + Delta-G solvation = -3413.335864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77913 -40.92393 -39.01814 -37.23553 -35.96806 -34.85127 -32.48904 -31.94779 -31.03515 -29.39989 -27.89548 -27.31057 -24.84817 -24.06931 -22.62349 -21.56489 -20.50355 -18.87987 -18.62519 -18.16082 -17.78200 -17.37964 -16.65775 -16.40713 -16.06945 -15.74896 -15.25502 -15.17393 -14.75823 -14.55342 -14.35245 -14.01107 -13.88927 -13.79998 -13.47047 -13.25800 -13.03414 -12.96634 -12.79610 -12.72437 -12.65942 -12.22046 -12.12610 -11.92112 -11.49740 -11.21402 -11.02661 -10.73783 -10.50963 -9.96926 -9.43909 -9.12820 -8.14952 -6.31967 -0.20156 0.36259 1.40893 1.44182 1.45245 1.51554 1.93817 2.09604 2.28137 2.47524 2.84200 3.12930 3.65727 3.74486 3.89291 3.96619 4.26204 4.37789 4.40767 4.52638 4.56274 4.65843 4.67891 4.75202 4.89181 4.96610 5.01079 5.05411 5.08808 5.13153 5.20269 5.35098 5.37890 5.48484 5.61741 5.66119 5.90702 6.03760 6.15285 6.42417 6.74993 6.77244 7.12109 7.27756 7.44025 8.89466 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.003199 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.173227 B = 8750.820937 C = 8808.692720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.501 3.499 3 O -0.579 6.579 4 N -0.656 5.656 5 C 0.166 3.834 6 C -0.142 4.142 7 C -0.061 4.061 8 C -0.160 4.160 9 C 0.534 3.466 10 O -0.609 6.609 11 N -0.591 5.591 12 C 0.066 3.934 13 C 0.260 3.740 14 H 0.005 0.995 15 C -0.131 4.131 16 C -0.540 4.540 17 H 0.062 0.938 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.967 3.033 21 H -0.259 1.259 22 H -0.283 1.283 23 H -0.279 1.279 24 C -0.075 4.075 25 C -0.137 4.137 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.435 0.565 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.020 0.980 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.265 0.735 39 H 0.170 0.830 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.365 -5.847 -3.883 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.292 3.708 3 O -0.457 6.457 4 N -0.304 5.304 5 C 0.070 3.930 6 C -0.162 4.162 7 C -0.081 4.081 8 C -0.164 4.164 9 C 0.324 3.676 10 O -0.493 6.493 11 N -0.320 5.320 12 C -0.076 4.076 13 C 0.158 3.842 14 H 0.023 0.977 15 C -0.190 4.190 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.791 3.209 21 H -0.183 1.183 22 H -0.209 1.209 23 H -0.205 1.205 24 C -0.094 4.094 25 C -0.157 4.157 26 H 0.134 0.866 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.276 0.724 30 H 0.147 0.853 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.187 0.813 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -26.518 -4.602 -3.795 27.181 hybrid contribution 1.080 -0.107 0.860 1.385 sum -25.438 -4.709 -2.934 26.036 Atomic orbital electron populations 1.21907 0.86318 1.07229 1.06339 1.22056 0.92887 0.82356 0.73453 1.90776 1.71900 1.33299 1.49770 1.43606 1.03806 1.11133 1.71823 1.18037 0.84454 0.95929 0.94558 1.20986 0.93351 1.00921 1.00987 1.21018 0.93769 0.96197 0.97127 1.19888 0.91258 1.00164 1.05110 1.19005 0.88326 0.83442 0.76813 1.90687 1.72025 1.34299 1.52285 1.48114 1.08030 1.07496 1.68320 1.22499 0.97667 0.85354 1.02050 1.18581 0.74966 0.95905 0.94706 0.97739 1.21867 1.02990 0.98952 0.95146 1.21537 0.92248 1.28925 1.15175 0.92033 1.25763 0.96894 0.97165 0.98697 1.70020 1.02763 1.43420 1.39474 0.85483 0.77008 0.79508 0.78858 1.18312 1.20851 1.20501 1.22111 0.95262 0.96338 0.95662 1.21210 0.92724 1.00918 1.00813 0.86610 0.87662 0.87602 0.72397 0.85293 0.87072 0.90097 0.91237 0.88292 0.96082 0.91300 0.92884 0.92584 0.81286 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 10.39 71.24 0.74 0.01 16 2 C 0.50 7.96 7.68 87.66 0.67 8.63 16 3 O -0.58 -16.15 14.73 -3.01 -0.04 -16.20 16 4 N -0.66 -8.19 5.32 -303.49 -1.61 -9.81 16 5 C 0.17 3.46 6.28 38.36 0.24 3.70 16 6 C -0.14 -4.08 8.63 22.35 0.19 -3.89 16 7 C -0.06 -2.13 9.58 22.50 0.22 -1.92 16 8 C -0.16 -5.67 5.50 -20.08 -0.11 -5.78 16 9 C 0.53 24.86 7.49 86.71 0.65 25.51 16 10 O -0.61 -34.76 15.93 -3.99 -0.06 -34.82 16 11 N -0.59 -26.40 2.75 -830.51 -2.29 -28.68 16 12 C 0.07 2.06 7.73 127.77 0.99 3.05 16 13 C 0.26 14.09 2.63 44.25 0.12 14.21 16 14 H 0.00 0.30 6.91 -2.39 -0.02 0.29 16 15 C -0.13 -6.42 8.97 71.98 0.65 -5.77 16 16 C -0.54 -30.15 8.04 25.60 0.21 -29.95 16 17 H 0.06 3.32 7.24 -2.91 -0.02 3.30 16 18 C 0.01 0.80 5.30 84.65 0.45 1.25 16 19 N -0.92 -53.99 11.32 21.45 0.24 -53.74 16 20 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C -0.08 -1.85 7.51 22.50 0.17 -1.68 16 25 C -0.14 -2.40 9.94 22.35 0.22 -2.18 16 26 H 0.12 -0.31 7.92 -2.38 -0.02 -0.33 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.44 1.22 8.65 -92.71 -0.80 0.42 16 30 H 0.13 3.84 6.37 -2.91 -0.02 3.83 16 31 H 0.11 4.25 7.83 -2.91 -0.02 4.23 16 32 H 0.08 2.03 7.13 -2.38 -0.02 2.01 16 33 H 0.07 2.32 6.96 -2.39 -0.02 2.31 16 34 H 0.10 2.51 5.11 -2.39 -0.01 2.50 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 37 H 0.05 2.30 7.67 -2.39 -0.02 2.28 16 38 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.17 3.50 4.43 -2.91 -0.01 3.49 16 40 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -85.11 329.67 3.93 -81.18 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.28 Total: 11.20 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 5.40 Total: 5.20 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -3.66 Total: -92.24 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.11 Total: -51.02 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -85.11 3.93 -81.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.546 kcal (2) G-P(sol) polarization free energy of solvation -85.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds