Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47105 * 2 1 4 4 O 1.21252 * 119.99934 * 359.97438 * 3 2 1 5 5 C 1.47177 * 120.00039 * 180.02562 * 3 2 1 6 6 C 1.39887 * 120.14033 * 359.72905 * 5 3 2 7 7 C 1.37909 * 119.96582 * 179.71787 * 6 5 3 8 8 C 1.38298 * 120.25279 * 0.55531 * 7 6 5 9 9 C 1.38982 * 120.27766 * 359.71851 * 8 7 6 10 10 N 1.39989 * 119.98531 * 179.97438 * 9 8 7 11 11 C 1.34783 * 119.99694 * 144.91152 * 10 9 8 12 12 O 1.21586 * 120.00077 * 4.61656 * 11 10 9 13 13 N 1.34776 * 119.99735 * 184.60900 * 11 10 9 14 14 C 1.46494 * 119.99824 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.47131 * 35.00851 * 14 13 11 16 16 C 1.53000 * 109.47414 * 275.00149 * 14 13 11 17 17 C 1.50703 * 109.47114 * 155.00378 * 14 13 11 18 18 H 1.08007 * 119.99775 * 0.02562 * 17 14 13 19 19 C 1.37867 * 120.00529 * 180.02562 * 17 14 13 20 20 N 1.31521 * 119.99994 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00537 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.46916 * 59.99663 * 21 19 17 23 23 H 1.48497 * 109.47149 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47019 * 300.00138 * 21 19 17 25 25 C 1.38559 * 120.03202 * 0.02562 * 9 8 7 26 26 H 1.09003 * 109.47317 * 60.00198 * 1 2 3 27 27 H 1.08996 * 109.47163 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47248 * 299.99884 * 1 2 3 29 29 H 1.08997 * 109.47388 * 120.00211 * 2 1 3 30 30 H 1.09002 * 109.47031 * 240.00235 * 2 1 3 31 31 H 1.07999 * 120.01527 * 359.97428 * 6 5 3 32 32 H 1.08002 * 119.87205 * 180.24760 * 7 6 5 33 33 H 1.08000 * 119.86125 * 179.69306 * 8 7 6 34 34 H 0.96997 * 120.00028 * 324.91722 * 10 9 8 35 35 H 0.97001 * 119.99657 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47160 * 60.00017 * 16 14 13 37 37 H 1.08998 * 109.47184 * 179.97438 * 16 14 13 38 38 H 1.08999 * 109.47030 * 300.00337 * 16 14 13 39 39 H 0.96993 * 120.00586 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.13101 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3424 -0.0005 5 6 3.4793 1.6898 -0.0006 6 6 4.3910 0.6288 0.0046 7 6 5.7461 0.8849 -0.0018 8 6 6.2089 2.1881 -0.0018 9 6 5.3123 3.2501 -0.0012 10 7 5.7875 4.5669 -0.0007 11 6 5.1177 5.5252 -0.6712 12 8 4.0574 5.2649 -1.2061 13 7 5.6234 6.7722 -0.7485 14 6 4.8951 7.8140 -1.4768 15 1 3.8230 7.6651 -1.3485 16 6 5.2464 7.7372 -2.9639 17 6 5.2822 9.1673 -0.9384 18 1 5.9994 9.2436 -0.1344 19 6 4.7210 10.3079 -1.4721 20 7 3.8481 10.2150 -2.4514 21 14 5.2003 11.9853 -0.8043 22 1 6.6610 12.1886 -0.9789 23 1 4.4613 13.0413 -1.5418 24 1 4.8594 12.0593 0.6391 25 6 3.9484 3.0062 -0.0001 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 4.0338 -0.3904 0.0095 32 1 6.4486 0.0645 -0.0019 33 1 7.2714 2.3814 -0.0019 34 1 6.5988 4.7895 0.4821 35 1 6.4694 6.9797 -0.3219 36 1 4.9664 6.7584 -3.3533 37 1 4.7042 8.5121 -3.5058 38 1 6.3186 7.8861 -3.0921 39 1 3.4529 11.0173 -2.8267 40 1 3.2503 3.8302 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119604393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = -46.078448 kcal Electronic energy + Delta-G solvation = -22348.355020 eV Core-core repulsion = 18935.086516 eV Total energy + Delta-G solvation = -3413.268505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45685 -39.45256 -37.99245 -35.17300 -34.24873 -33.01008 -32.41181 -31.15414 -29.89823 -28.22588 -25.64276 -25.25811 -23.11341 -22.64076 -21.24272 -19.84939 -19.58576 -18.21665 -17.58661 -16.30873 -16.02632 -15.65298 -15.52049 -15.33084 -14.87848 -14.68238 -14.14243 -13.96087 -13.69361 -13.36978 -13.17627 -12.54176 -12.42130 -12.39665 -12.09018 -11.85594 -11.74736 -11.44743 -11.31861 -11.11026 -10.99395 -10.77760 -10.36841 -10.23713 -10.15232 -9.66769 -9.43032 -9.06380 -8.93449 -8.57464 -8.19475 -7.80747 -6.12658 -4.22431 0.67727 1.39785 2.41673 3.10268 3.25399 3.31012 3.32635 3.64112 3.91748 3.99959 4.31912 4.73120 4.83752 4.91964 4.94749 4.96411 5.04603 5.19707 5.20658 5.39942 5.50161 5.60912 5.71871 5.76818 5.88166 6.05280 6.25074 6.33132 6.41260 6.57440 6.78916 6.96841 7.09497 7.10538 7.20466 7.44035 7.58232 7.60852 7.81563 7.97613 8.14507 8.70416 8.82324 9.20286 9.45646 10.93394 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.003347 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.008149 B = 8363.772898 C = 9198.254449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 C 0.390 3.610 4 O -0.442 6.442 5 C -0.155 4.155 6 C -0.103 4.103 7 C -0.115 4.115 8 C -0.126 4.126 9 C 0.169 3.831 10 N -0.697 5.697 11 C 0.690 3.310 12 O -0.578 6.578 13 N -0.717 5.717 14 C 0.280 3.720 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.536 4.536 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.882 5.882 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 C -0.064 4.064 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.404 0.596 35 H 0.386 0.614 36 H 0.015 0.985 37 H 0.091 0.909 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -20.856 6.240 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.267 3.733 4 O -0.316 6.316 5 C -0.157 4.157 6 C -0.122 4.122 7 C -0.133 4.133 8 C -0.148 4.148 9 C 0.072 3.928 10 N -0.346 5.346 11 C 0.390 3.610 12 O -0.455 6.455 13 N -0.368 5.368 14 C 0.178 3.822 15 H 0.068 0.932 16 C -0.207 4.207 17 C -0.574 4.574 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.084 4.084 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.239 0.761 35 H 0.219 0.781 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.498 -20.306 5.558 21.200 hybrid contribution 1.335 1.108 0.679 1.864 sum 3.833 -19.197 6.237 20.546 Atomic orbital electron populations 1.21605 0.93739 1.01602 1.03307 1.21966 0.98253 0.95813 1.04420 1.22524 0.87910 0.91153 0.71707 1.90572 1.58202 1.47735 1.35080 1.20412 0.94976 0.93852 1.06467 1.21280 0.92955 0.98255 0.99703 1.20814 0.95403 0.95966 1.01160 1.21126 0.99286 0.91991 1.02373 1.17484 0.92457 0.83578 0.99236 1.42862 1.30299 1.06325 1.55066 1.16207 0.83977 0.81204 0.79564 1.90909 1.22165 1.80625 1.51790 1.45870 1.25656 1.08178 1.57104 1.18699 0.92868 0.82831 0.87758 0.93190 1.22104 0.99406 0.99675 0.99479 1.21160 1.26567 0.90204 1.19488 0.92119 1.24882 0.94688 0.99324 0.94781 1.69895 1.27968 1.29373 1.24723 0.86482 0.78529 0.82878 0.79037 1.20176 1.21090 1.20166 1.21769 0.95077 0.97135 0.94440 0.91986 0.92164 0.92097 0.88468 0.88419 0.85386 0.85345 0.85471 0.76128 0.78145 0.96596 0.89050 0.95510 0.92442 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.20 37.16 0.34 -0.99 16 2 C -0.17 -1.46 5.03 -27.88 -0.14 -1.60 16 3 C 0.39 5.32 7.12 -30.68 -0.22 5.10 16 4 O -0.44 -7.93 15.97 5.58 0.09 -7.84 16 5 C -0.16 -2.13 5.87 -105.09 -0.62 -2.75 16 6 C -0.10 -1.03 9.47 -39.09 -0.37 -1.40 16 7 C -0.11 -1.08 10.02 -39.68 -0.40 -1.48 16 8 C -0.13 -1.40 9.96 -39.28 -0.39 -1.80 16 9 C 0.17 2.51 6.29 -83.74 -0.53 1.99 16 10 N -0.70 -10.68 5.34 -14.26 -0.08 -10.76 16 11 C 0.69 14.22 8.37 -86.91 -0.73 13.49 16 12 O -0.58 -14.39 13.44 5.29 0.07 -14.32 16 13 N -0.72 -14.98 5.07 -59.81 -0.30 -15.29 16 14 C 0.28 7.22 2.56 -69.08 -0.18 7.04 16 15 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 16 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 17 C -0.54 -14.24 8.73 -34.44 -0.30 -14.54 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 20 N -0.88 -25.08 11.32 55.43 0.63 -24.46 16 21 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.06 -1.08 8.24 -38.90 -0.32 -1.40 16 26 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.10 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.13 0.84 7.04 -52.49 -0.37 0.47 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.40 4.60 8.84 -40.82 -0.36 4.24 16 35 H 0.39 6.78 8.56 -40.82 -0.35 6.44 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.16 3.25 5.81 -52.49 -0.30 2.95 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -33.77 340.28 -8.51 -42.28 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.43 Total: 9.59 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.60 Total: -0.01 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.25 Total: -50.50 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.77 -8.51 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119604393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.799 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds