Wall clock time and date at job start Tue Mar 31 2020 06:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50693 * 119.99837 * 2 1 4 4 H 1.09004 * 109.47685 * 5.00855 * 3 2 1 5 5 C 1.52999 * 109.47213 * 125.00397 * 3 2 1 6 6 N 1.46503 * 109.47607 * 245.00411 * 3 2 1 7 7 C 1.34775 * 120.00278 * 154.99774 * 6 3 2 8 8 O 1.21593 * 119.99924 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00054 * 179.97438 * 7 6 3 10 10 C 1.46497 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47145 * 180.02562 * 10 9 7 12 12 C 1.38327 * 119.96363 * 269.72561 * 11 10 9 13 13 C 1.38286 * 120.13282 * 179.76659 * 12 11 10 14 14 C 1.38116 * 120.07071 * 0.51245 * 13 12 11 15 15 C 1.38857 * 119.93206 * 359.74143 * 14 13 12 16 16 O 1.35747 * 120.07058 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99969 * 354.49453 * 16 15 14 18 18 H 1.07999 * 120.00206 * 5.05097 * 17 16 15 19 19 C 1.38661 * 120.00112 * 185.05427 * 17 16 15 20 20 N 1.31557 * 119.99994 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99873 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47087 * 89.99629 * 21 19 17 23 23 H 1.48493 * 109.46831 * 209.99794 * 21 19 17 24 24 H 1.48499 * 109.46884 * 329.99425 * 21 19 17 25 25 C 1.38077 * 119.96850 * 90.00242 * 11 10 9 26 26 H 1.07997 * 119.99891 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99696 * 179.72452 * 1 2 3 28 28 H 1.07997 * 119.99891 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47262 * 300.00689 * 5 3 2 30 30 H 1.09005 * 109.47144 * 59.99854 * 5 3 2 31 31 H 1.08992 * 109.47487 * 179.97438 * 5 3 2 32 32 H 0.97002 * 119.99481 * 335.00578 * 6 3 2 33 33 H 0.97002 * 119.99705 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47457 * 300.00198 * 10 9 7 35 35 H 1.08998 * 109.47334 * 60.00557 * 10 9 7 36 36 H 1.07997 * 119.93338 * 0.02562 * 12 11 10 37 37 H 1.08005 * 119.95869 * 180.25883 * 13 12 11 38 38 H 1.08004 * 120.03686 * 179.77367 * 14 13 12 39 39 H 0.97001 * 119.99579 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.03138 * 359.96026 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1317 0.0897 5 6 3.0351 1.3331 1.1816 6 7 2.8132 1.4363 -1.2518 7 6 3.1404 2.6584 -1.7165 8 8 2.8137 3.6520 -1.0965 9 7 3.8304 2.7790 -2.8678 10 6 4.1866 4.1074 -3.3726 11 6 4.9488 3.9659 -4.6649 12 6 6.3281 3.8633 -4.6458 13 6 7.0307 3.7286 -5.8293 14 6 6.3575 3.7067 -7.0351 15 6 4.9734 3.8147 -7.0579 16 8 4.3089 3.7940 -8.2415 17 6 5.0569 3.7813 -9.3632 18 1 6.1320 3.7054 -9.2945 19 6 4.4458 3.8658 -10.6050 20 7 5.1757 3.8539 -11.6995 21 14 2.5862 3.9981 -10.7238 22 1 2.1897 5.4290 -10.7075 23 1 2.1253 3.3710 -11.9885 24 1 1.9656 3.2992 -9.5699 25 6 4.2701 3.9446 -5.8672 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0045 28 1 1.8500 -0.9353 -0.0004 29 1 2.4774 1.2354 2.1130 30 1 3.7401 0.5065 1.0919 31 1 3.5804 2.2768 1.1813 32 1 3.0739 0.6435 -1.7463 33 1 4.0913 1.9863 -3.3622 34 1 3.2789 4.6848 -3.5479 35 1 4.8076 4.6206 -2.6385 36 1 6.8571 3.8843 -3.7045 37 1 8.1073 3.6445 -5.8108 38 1 6.9071 3.6051 -7.9593 39 1 4.7482 3.9135 -12.5682 40 1 3.1934 4.0286 -5.8817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128472526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:50 Heat of formation + Delta-G solvation = -14.644149 kcal Electronic energy + Delta-G solvation = -21777.344456 eV Core-core repulsion = 18365.439045 eV Total energy + Delta-G solvation = -3411.905411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15075 -39.26226 -37.24295 -36.51737 -34.46057 -32.93992 -32.44760 -30.90406 -29.75098 -29.25836 -25.94539 -25.10187 -23.49084 -21.84653 -20.83333 -20.73127 -20.45849 -18.45364 -17.75229 -17.24181 -16.66715 -15.63335 -15.25372 -15.20246 -14.84044 -14.53510 -14.33064 -14.10292 -13.86111 -13.81745 -13.39960 -13.06907 -12.60036 -12.57956 -12.45228 -12.18601 -12.08636 -11.86744 -11.46468 -11.13360 -10.94577 -10.88878 -10.76813 -10.30920 -10.21275 -9.90513 -9.47391 -9.34333 -8.94022 -8.83528 -8.34951 -7.49158 -6.47423 -4.14792 1.65317 1.86087 2.14356 2.94390 3.18530 3.21899 3.22756 3.36400 4.18813 4.22411 4.37337 4.49231 4.66230 4.74189 5.02550 5.05246 5.11530 5.13998 5.39223 5.42911 5.47313 5.66096 5.68767 5.75078 5.86682 5.92266 6.00313 6.14211 6.17654 6.25950 6.41242 6.45651 6.50968 6.66958 6.89557 7.00027 7.11288 7.19621 7.48836 7.72060 7.96425 8.00343 8.59390 8.87549 9.48650 10.60022 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.003032 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.824869 B = 9231.689810 C =10185.045341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.171 4.171 3 C 0.188 3.812 4 H 0.090 0.910 5 C -0.161 4.161 6 N -0.743 5.743 7 C 0.704 3.296 8 O -0.596 6.596 9 N -0.737 5.737 10 C 0.187 3.813 11 C -0.075 4.075 12 C -0.185 4.185 13 C -0.078 4.078 14 C -0.212 4.212 15 C 0.156 3.844 16 O -0.216 6.216 17 C -0.391 4.391 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.878 5.878 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.170 4.170 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.399 0.601 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.280 0.720 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.014 -7.366 20.468 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.190 4.190 3 C 0.083 3.917 4 H 0.108 0.892 5 C -0.219 4.219 6 N -0.398 5.398 7 C 0.404 3.596 8 O -0.474 6.474 9 N -0.392 5.392 10 C 0.064 3.936 11 C -0.076 4.076 12 C -0.205 4.205 13 C -0.096 4.096 14 C -0.232 4.232 15 C 0.104 3.896 16 O -0.121 6.121 17 C -0.467 4.467 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.516 5.516 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.190 4.190 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.152 0.848 39 H 0.090 0.910 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.556 -6.400 20.727 22.166 hybrid contribution -0.256 -0.770 -0.862 1.184 sum -4.812 -7.169 19.865 21.660 Atomic orbital electron populations 1.24004 0.95872 1.02357 0.97969 1.23052 0.96159 0.97938 1.01856 1.19855 0.92918 0.95797 0.83133 0.89200 1.22167 0.99614 1.02647 0.97484 1.45208 1.61373 1.06877 1.26363 1.15958 0.78870 0.83677 0.81089 1.90910 1.60171 1.36427 1.59914 1.45262 1.59846 1.09912 1.24180 1.19987 0.98583 0.82996 0.92080 1.19286 0.93596 1.01867 0.92804 1.20562 0.93152 1.09216 0.97534 1.20808 0.98870 0.97853 0.92095 1.21366 0.94300 1.08555 0.98955 1.19059 0.90710 0.93485 0.86368 1.83575 1.35888 1.80800 1.11820 1.20762 0.92682 1.52071 0.81157 0.87593 1.24471 1.00288 0.95565 0.93605 1.69644 1.36422 1.47645 0.97839 0.86181 0.83546 0.79132 0.78053 1.19806 1.20744 1.18371 1.20091 0.99426 1.09730 0.89760 0.88189 0.87948 0.86838 0.91712 0.92490 0.91682 0.77050 0.76740 0.91053 0.91033 0.87271 0.86985 0.84843 0.90970 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 14.32 29.01 0.42 -0.67 16 2 C -0.17 -1.20 8.96 -36.03 -0.32 -1.52 16 3 C 0.19 1.72 2.93 -69.08 -0.20 1.52 16 4 H 0.09 0.99 7.23 -51.93 -0.38 0.62 16 5 C -0.16 -1.35 9.47 37.16 0.35 -1.00 16 6 N -0.74 -7.39 5.07 -59.81 -0.30 -7.69 16 7 C 0.70 9.47 8.53 -86.92 -0.74 8.73 16 8 O -0.60 -10.25 16.01 5.28 0.08 -10.16 16 9 N -0.74 -9.24 5.55 -66.42 -0.37 -9.61 16 10 C 0.19 2.62 5.80 -5.19 -0.03 2.59 16 11 C -0.07 -1.19 5.25 -104.65 -0.55 -1.73 16 12 C -0.19 -2.87 9.70 -39.53 -0.38 -3.25 16 13 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 14 C -0.21 -4.34 9.17 -39.40 -0.36 -4.71 16 15 C 0.16 3.44 6.65 -39.11 -0.26 3.18 16 16 O -0.22 -5.52 8.59 0.06 0.00 -5.52 16 17 C -0.39 -10.75 9.95 30.89 0.31 -10.45 16 18 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 19 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 20 N -0.88 -24.94 13.96 55.48 0.77 -24.17 16 21 Si 0.91 21.33 28.62 -169.99 -4.86 16.46 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.17 -3.19 9.64 -39.40 -0.38 -3.57 16 26 H 0.10 0.69 7.84 -52.49 -0.41 0.27 16 27 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 28 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 2.99 8.61 -40.82 -0.35 2.64 16 33 H 0.40 4.34 8.48 -40.82 -0.35 3.99 16 34 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 39 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -30.99 347.43 -7.51 -38.51 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.42 Total: 7.88 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.65 Total: -10.93 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.10 Total: -41.46 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.09 Total: -15.69 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.99 -7.51 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128472526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.861 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds