Wall clock time and date at job start Tue Mar 31 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50693 * 119.99837 * 2 1 4 4 H 1.09004 * 109.47685 * 5.00855 * 3 2 1 5 5 C 1.52999 * 109.47213 * 125.00397 * 3 2 1 6 6 N 1.46503 * 109.47607 * 245.00411 * 3 2 1 7 7 C 1.34775 * 120.00278 * 154.99774 * 6 3 2 8 8 O 1.21593 * 119.99924 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00054 * 179.97438 * 7 6 3 10 10 C 1.46497 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47145 * 180.02562 * 10 9 7 12 12 C 1.38327 * 119.96363 * 269.72561 * 11 10 9 13 13 C 1.38286 * 120.13282 * 179.76659 * 12 11 10 14 14 C 1.38116 * 120.07071 * 0.51245 * 13 12 11 15 15 C 1.38857 * 119.93206 * 359.74143 * 14 13 12 16 16 O 1.35747 * 120.07058 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99969 * 354.49453 * 16 15 14 18 18 H 1.07999 * 120.00206 * 5.05097 * 17 16 15 19 19 C 1.38661 * 120.00112 * 185.05427 * 17 16 15 20 20 N 1.31557 * 119.99994 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99873 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47087 * 89.99629 * 21 19 17 23 23 H 1.48493 * 109.46831 * 209.99794 * 21 19 17 24 24 H 1.48499 * 109.46884 * 329.99425 * 21 19 17 25 25 C 1.38077 * 119.96850 * 90.00242 * 11 10 9 26 26 H 1.07997 * 119.99891 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99696 * 179.72452 * 1 2 3 28 28 H 1.07997 * 119.99891 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47262 * 300.00689 * 5 3 2 30 30 H 1.09005 * 109.47144 * 59.99854 * 5 3 2 31 31 H 1.08992 * 109.47487 * 179.97438 * 5 3 2 32 32 H 0.97002 * 119.99481 * 335.00578 * 6 3 2 33 33 H 0.97002 * 119.99705 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47457 * 300.00198 * 10 9 7 35 35 H 1.08998 * 109.47334 * 60.00557 * 10 9 7 36 36 H 1.07997 * 119.93338 * 0.02562 * 12 11 10 37 37 H 1.08005 * 119.95869 * 180.25883 * 13 12 11 38 38 H 1.08004 * 120.03686 * 179.77367 * 14 13 12 39 39 H 0.97001 * 119.99579 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.03138 * 359.96026 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1317 0.0897 5 6 3.0351 1.3331 1.1816 6 7 2.8132 1.4363 -1.2518 7 6 3.1404 2.6584 -1.7165 8 8 2.8137 3.6520 -1.0965 9 7 3.8304 2.7790 -2.8678 10 6 4.1866 4.1074 -3.3726 11 6 4.9488 3.9659 -4.6649 12 6 6.3281 3.8633 -4.6458 13 6 7.0307 3.7286 -5.8293 14 6 6.3575 3.7067 -7.0351 15 6 4.9734 3.8147 -7.0579 16 8 4.3089 3.7940 -8.2415 17 6 5.0569 3.7813 -9.3632 18 1 6.1320 3.7054 -9.2945 19 6 4.4458 3.8658 -10.6050 20 7 5.1757 3.8539 -11.6995 21 14 2.5862 3.9981 -10.7238 22 1 2.1897 5.4290 -10.7075 23 1 2.1253 3.3710 -11.9885 24 1 1.9656 3.2992 -9.5699 25 6 4.2701 3.9446 -5.8672 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0045 28 1 1.8500 -0.9353 -0.0004 29 1 2.4774 1.2354 2.1130 30 1 3.7401 0.5065 1.0919 31 1 3.5804 2.2768 1.1813 32 1 3.0739 0.6435 -1.7463 33 1 4.0913 1.9863 -3.3622 34 1 3.2789 4.6848 -3.5479 35 1 4.8076 4.6206 -2.6385 36 1 6.8571 3.8843 -3.7045 37 1 8.1073 3.6445 -5.8108 38 1 6.9071 3.6051 -7.9593 39 1 4.7482 3.9135 -12.5682 40 1 3.1934 4.0286 -5.8817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128472526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:49 Heat of formation + Delta-G solvation = -35.323218 kcal Electronic energy + Delta-G solvation = -21778.241167 eV Core-core repulsion = 18365.439045 eV Total energy + Delta-G solvation = -3412.802123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26403 -40.79535 -38.69468 -37.47031 -35.68155 -34.45901 -33.74975 -32.12060 -31.03098 -30.34074 -27.46128 -26.75629 -24.28331 -23.31569 -22.29366 -21.80889 -21.12909 -19.79796 -19.38500 -18.67119 -17.66523 -16.90883 -16.79184 -16.38058 -16.03618 -15.78946 -15.63409 -15.54322 -15.01610 -14.89362 -14.59742 -14.49716 -14.21356 -13.83260 -13.71400 -13.25357 -13.10867 -13.08291 -12.61572 -12.57753 -12.46765 -12.36972 -11.94525 -11.76213 -11.43069 -11.31018 -10.92146 -10.50824 -10.35767 -9.81379 -9.77291 -9.12642 -8.50618 -6.23311 0.32917 0.64618 1.15354 1.31449 1.34982 1.51157 2.00076 2.16996 2.27137 2.76102 2.98156 3.12231 3.46883 3.75438 3.78186 4.06475 4.14559 4.28156 4.36203 4.42909 4.50053 4.52613 4.64757 4.70499 4.77541 4.91938 4.93445 5.05681 5.18926 5.25485 5.36588 5.43888 5.52272 5.63373 5.65649 5.69095 5.74616 5.83818 5.88919 6.02230 6.19360 6.84014 7.09427 7.58035 7.58575 8.60851 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.003032 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.824869 B = 9231.689810 C =10185.045341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.173 4.173 3 C 0.184 3.816 4 H 0.066 0.934 5 C -0.155 4.155 6 N -0.729 5.729 7 C 0.702 3.298 8 O -0.635 6.635 9 N -0.730 5.730 10 C 0.194 3.806 11 C -0.060 4.060 12 C -0.157 4.157 13 C -0.074 4.074 14 C -0.228 4.228 15 C 0.119 3.881 16 O -0.245 6.245 17 C -0.398 4.398 18 H 0.084 0.916 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.268 1.268 24 H -0.263 1.263 25 C -0.169 4.169 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.410 0.590 33 H 0.409 0.591 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.285 0.715 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -8.496 23.319 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.191 4.191 3 C 0.080 3.920 4 H 0.084 0.916 5 C -0.213 4.213 6 N -0.384 5.384 7 C 0.402 3.598 8 O -0.517 6.517 9 N -0.386 5.386 10 C 0.070 3.930 11 C -0.060 4.060 12 C -0.176 4.176 13 C -0.092 4.092 14 C -0.247 4.247 15 C 0.070 3.930 16 O -0.153 6.153 17 C -0.474 4.474 18 H 0.101 0.899 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.188 4.188 26 H 0.110 0.890 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.246 0.754 33 H 0.244 0.756 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.838 -7.578 23.615 25.268 hybrid contribution -0.041 -0.429 -1.385 1.450 sum -4.879 -8.007 22.230 24.127 Atomic orbital electron populations 1.24169 0.95950 1.02910 0.97097 1.23020 0.96157 0.97388 1.02550 1.19927 0.92803 0.96323 0.82968 0.91617 1.22107 0.99609 1.01835 0.97766 1.45136 1.60484 1.06293 1.26536 1.16092 0.78702 0.84101 0.80945 1.90888 1.61718 1.38051 1.61067 1.45066 1.59729 1.09732 1.24055 1.19858 0.98257 0.83803 0.91094 1.19458 0.94035 1.00047 0.92501 1.21036 0.92907 1.05153 0.98518 1.21144 1.00566 0.96486 0.90960 1.21405 0.93959 1.09577 0.99784 1.19563 0.91790 0.95354 0.86248 1.83520 1.35987 1.83619 1.12162 1.20710 0.92103 1.52161 0.82467 0.89862 1.25246 1.04649 0.95612 0.93224 1.69724 1.38138 1.50067 0.98401 0.85252 0.78254 0.79228 0.78208 1.19277 1.19244 1.18720 1.20271 0.99817 1.09180 0.89578 0.89001 0.86128 0.84802 0.90429 0.91038 0.94102 0.75382 0.75559 0.91761 0.89921 0.83342 0.83790 0.87173 0.90580 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 14.32 67.77 0.97 -0.84 16 2 C -0.17 -1.97 8.96 25.64 0.23 -1.74 16 3 C 0.18 3.07 2.93 44.24 0.13 3.20 16 4 H 0.07 1.43 7.23 -2.38 -0.02 1.41 16 5 C -0.15 -2.33 9.47 71.98 0.68 -1.64 16 6 N -0.73 -12.91 5.07 -461.41 -2.34 -15.25 16 7 C 0.70 17.53 8.53 179.06 1.53 19.06 16 8 O -0.64 -21.22 16.01 -4.01 -0.06 -21.28 16 9 N -0.73 -16.29 5.55 -482.31 -2.68 -18.97 16 10 C 0.19 4.87 5.80 85.63 0.50 5.37 16 11 C -0.06 -1.72 5.25 -19.88 -0.10 -1.82 16 12 C -0.16 -4.21 9.70 22.30 0.22 -3.99 16 13 C -0.07 -2.29 10.04 22.25 0.22 -2.07 16 14 C -0.23 -9.40 9.17 22.39 0.21 -9.19 16 15 C 0.12 5.33 6.65 22.58 0.15 5.48 16 16 O -0.25 -12.99 8.59 -22.69 -0.19 -13.18 16 17 C -0.40 -22.97 9.95 67.92 0.68 -22.30 16 18 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 19 C 0.01 0.64 5.49 84.84 0.47 1.11 16 20 N -0.92 -54.49 13.96 21.62 0.30 -54.19 16 21 Si 0.97 45.02 28.62 68.60 1.96 46.98 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 25 C -0.17 -6.14 9.64 22.39 0.22 -5.93 16 26 H 0.09 1.16 7.84 -2.91 -0.02 1.13 16 27 H 0.12 0.91 8.06 -2.91 -0.02 0.88 16 28 H 0.13 1.02 8.06 -2.91 -0.02 0.99 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.41 4.98 8.61 -92.71 -0.80 4.19 16 33 H 0.41 7.57 8.48 -92.71 -0.79 6.79 16 34 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 36 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 38 H 0.11 5.04 5.64 -2.91 -0.02 5.02 16 39 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -70.40 347.43 2.55 -67.85 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.52 Total: 23.35 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 6.08 Total: -15.30 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -4.72 Total: -88.41 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.26 Total: -34.46 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.96 Total: 46.98 kcal Total: -70.40 2.55 -67.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128472526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.527 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds