Wall clock time and date at job start Tue Mar 31 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 C 1.34774 * 120.00476 * 275.00648 * 12 2 1 14 14 O 1.21512 * 119.99447 * 359.97438 * 13 12 2 15 15 C 1.48164 * 119.99838 * 180.02562 * 13 12 2 16 16 C 1.39968 * 120.89199 * 359.97438 * 15 13 12 17 17 C 1.37974 * 119.12993 * 180.02562 * 16 15 13 18 18 N 1.31916 * 120.98204 * 359.97438 * 17 16 15 19 19 C 1.32174 * 121.96361 * 0.02562 * 18 17 16 20 20 O 1.35694 * 119.61647 * 180.02562 * 19 18 17 21 21 C 1.42898 * 116.99905 * 359.97438 * 20 19 18 22 22 C 1.53782 * 113.61658 * 247.49961 * 21 20 19 23 23 C 1.53784 * 87.08029 * 220.02482 * 22 21 20 24 24 C 1.53777 * 87.08219 * 25.43085 * 23 22 21 25 25 C 1.38886 * 120.76042 * 359.71349 * 19 18 17 26 26 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 28 28 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 30 30 H 0.97008 * 119.99239 * 95.00725 * 12 2 1 31 31 H 1.07998 * 120.43309 * 359.97438 * 16 15 13 32 32 H 1.08004 * 119.50861 * 179.97438 * 17 16 15 33 33 H 1.09005 * 112.85000 * 18.80923 * 21 20 19 34 34 H 1.09001 * 113.61317 * 334.57080 * 22 21 20 35 35 H 1.08998 * 113.61520 * 105.47394 * 22 21 20 36 36 H 1.09000 * 113.60792 * 270.88079 * 23 22 21 37 37 H 1.08999 * 113.61096 * 139.98375 * 23 22 21 38 38 H 1.09001 * 113.61497 * 220.01803 * 24 23 22 39 39 H 1.09000 * 113.69153 * 89.13224 * 24 23 22 40 40 H 1.08001 * 120.53311 * 180.28514 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8584 1.1609 2.4116 15 6 2.6416 -0.7166 3.5667 16 6 2.9799 -2.0741 3.5249 17 6 3.4362 -2.6883 4.6730 18 7 3.5567 -2.0152 5.8012 19 6 3.2491 -0.7327 5.8871 20 8 3.3918 -0.0867 7.0718 21 6 3.8766 -0.8547 8.1751 22 6 2.8335 -1.0640 9.2856 23 6 3.9758 -0.8446 10.2915 24 6 4.6802 -0.0296 9.1941 25 6 2.7876 -0.0370 4.7771 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7087 1.1613 -3.4844 30 1 2.2492 -1.6317 1.1525 31 1 2.8843 -2.6336 2.6061 32 1 3.6987 -3.7356 4.6478 33 1 4.3764 -1.7724 7.8650 34 1 2.0684 -0.2884 9.3178 35 1 2.4178 -2.0713 9.3098 36 1 4.5020 -1.7603 10.5611 37 1 3.6861 -0.2508 11.1584 38 1 5.7554 -0.2018 9.1445 39 1 4.4211 1.0291 9.2003 40 1 2.5416 1.0121 4.8503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134224619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:41 Heat of formation + Delta-G solvation = -18.947687 kcal Electronic energy + Delta-G solvation = -22161.217709 eV Core-core repulsion = 18749.125683 eV Total energy + Delta-G solvation = -3412.092026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85115 -39.48620 -38.43483 -36.48186 -34.93446 -32.85150 -32.18411 -30.47727 -28.86440 -25.98655 -25.84923 -25.30759 -24.16598 -23.28182 -21.34908 -19.93386 -19.75109 -18.78876 -17.41000 -16.65257 -16.00754 -15.80093 -15.50152 -15.37206 -15.11008 -14.78518 -14.42263 -14.25434 -13.91018 -13.23576 -13.09374 -12.76921 -12.63011 -12.49901 -11.90368 -11.78547 -11.72115 -11.55165 -11.15033 -11.00509 -10.81985 -10.75837 -10.51964 -10.39291 -10.27727 -9.88117 -9.81076 -9.25241 -9.10937 -8.60517 -8.54442 -8.03425 -6.16499 -4.26475 0.83491 1.13108 2.88961 3.23252 3.27783 3.29016 3.30164 3.87123 4.00318 4.18689 4.26854 4.27822 4.33074 4.54630 4.62501 4.83307 5.01162 5.10277 5.15614 5.18764 5.34070 5.37903 5.43943 5.54526 5.63086 5.69147 5.76582 5.86391 5.97912 6.15832 6.35525 6.77255 6.90460 7.08080 7.20696 7.33282 7.47615 7.62931 7.74184 7.84585 8.08794 8.52313 8.69397 8.95466 9.40724 10.89479 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040872 B = 0.002811 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.897941 B = 9956.895266 C =10299.106175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.695 5.695 13 C 0.541 3.459 14 O -0.540 6.540 15 C -0.040 4.040 16 C -0.183 4.183 17 C 0.134 3.866 18 N -0.535 5.535 19 C 0.316 3.684 20 O -0.292 6.292 21 C 0.061 3.939 22 C -0.152 4.152 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.138 4.138 26 H 0.028 0.972 27 H 0.016 0.984 28 H 0.092 0.908 29 H 0.266 0.734 30 H 0.390 0.610 31 H 0.144 0.856 32 H 0.164 0.836 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 -7.281 20.124 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.342 5.342 13 C 0.325 3.675 14 O -0.419 6.419 15 C -0.051 4.051 16 C -0.204 4.204 17 C -0.021 4.021 18 N -0.260 5.260 19 C 0.138 3.862 20 O -0.199 6.199 21 C 0.004 3.996 22 C -0.190 4.190 23 C -0.176 4.176 24 C -0.175 4.175 25 C -0.160 4.160 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.224 0.776 31 H 0.161 0.839 32 H 0.181 0.819 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.500 -6.433 20.769 22.428 hybrid contribution 0.150 -0.740 -1.591 1.761 sum 5.650 -7.174 19.179 21.242 Atomic orbital electron populations 1.22090 0.98170 0.99295 1.01101 1.18839 0.91218 0.94098 0.79607 0.93070 1.21146 1.32750 1.13382 0.90213 0.92030 1.24889 0.94741 0.94946 0.99084 1.69890 1.35604 1.22343 1.24115 0.86477 0.79180 0.79567 0.81702 1.21093 1.20137 1.20118 1.46508 1.63896 1.13667 1.10174 1.18082 0.79484 0.86805 0.83165 1.90747 1.50909 1.15374 1.84823 1.20546 0.96232 0.93831 0.94458 1.22233 1.02720 0.94673 1.00755 1.22304 0.93884 0.99449 0.86459 1.67037 1.21043 1.07934 1.29940 1.19638 0.92377 0.87917 0.86317 1.86363 1.79841 1.37731 1.16015 1.24153 0.96321 0.96382 0.82694 1.23450 0.97640 1.02849 0.95074 1.22625 0.97580 1.00618 0.96817 1.23273 0.99672 1.00480 0.94090 1.21160 1.02614 1.02438 0.89771 0.95325 0.96531 0.88932 0.92421 0.77634 0.83850 0.81934 0.86561 0.89200 0.90854 0.89737 0.90479 0.90655 0.88974 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.62 2.56 -69.09 -0.18 6.45 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -13.94 8.73 -34.44 -0.30 -14.24 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.54 11.32 55.43 0.63 -23.91 16 8 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.69 -14.31 5.03 -55.78 -0.28 -14.59 16 13 C 0.54 11.04 7.76 -12.18 -0.09 10.94 16 14 O -0.54 -13.04 16.10 5.36 0.09 -12.96 16 15 C -0.04 -0.65 5.91 -104.67 -0.62 -1.27 16 16 C -0.18 -2.35 9.61 -39.03 -0.38 -2.73 16 17 C 0.13 1.54 11.17 -17.61 -0.20 1.34 16 18 N -0.54 -7.05 8.56 -13.38 -0.11 -7.17 16 19 C 0.32 4.57 7.49 -17.16 -0.13 4.44 16 20 O -0.29 -3.94 10.13 -18.79 -0.19 -4.13 16 21 C 0.06 0.64 4.18 -25.92 -0.11 0.53 16 22 C -0.15 -1.33 7.91 -25.92 -0.21 -1.53 16 23 C -0.14 -0.95 8.08 -25.92 -0.21 -1.16 16 24 C -0.14 -1.13 7.91 -25.92 -0.21 -1.33 16 25 C -0.14 -2.19 9.61 -38.84 -0.37 -2.56 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 6.79 6.68 -40.82 -0.27 6.52 16 31 H 0.14 1.55 6.53 -52.49 -0.34 1.21 16 32 H 0.16 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.12 1.24 6.87 -51.93 -0.36 0.88 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.15 2.47 7.74 -52.49 -0.41 2.06 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -30.70 338.18 -7.97 -38.68 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.43 Total: 6.44 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.74 Total: -2.74 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.23 Total: -45.67 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.10 Total: -17.08 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.70 -7.97 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134224619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.728 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds