Wall clock time and date at job start Tue Mar 31 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 C 1.34774 * 120.00476 * 275.00648 * 12 2 1 14 14 O 1.21512 * 119.99447 * 359.97438 * 13 12 2 15 15 C 1.48164 * 119.99838 * 180.02562 * 13 12 2 16 16 C 1.39968 * 120.89199 * 359.97438 * 15 13 12 17 17 C 1.37974 * 119.12993 * 180.02562 * 16 15 13 18 18 N 1.31916 * 120.98204 * 359.97438 * 17 16 15 19 19 C 1.32174 * 121.96361 * 0.02562 * 18 17 16 20 20 O 1.35694 * 119.61647 * 180.02562 * 19 18 17 21 21 C 1.42898 * 116.99905 * 359.97438 * 20 19 18 22 22 C 1.53782 * 113.61658 * 247.49961 * 21 20 19 23 23 C 1.53784 * 87.08029 * 220.02482 * 22 21 20 24 24 C 1.53777 * 87.08219 * 25.43085 * 23 22 21 25 25 C 1.38886 * 120.76042 * 359.71349 * 19 18 17 26 26 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 28 28 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 30 30 H 0.97008 * 119.99239 * 95.00725 * 12 2 1 31 31 H 1.07998 * 120.43309 * 359.97438 * 16 15 13 32 32 H 1.08004 * 119.50861 * 179.97438 * 17 16 15 33 33 H 1.09005 * 112.85000 * 18.80923 * 21 20 19 34 34 H 1.09001 * 113.61317 * 334.57080 * 22 21 20 35 35 H 1.08998 * 113.61520 * 105.47394 * 22 21 20 36 36 H 1.09000 * 113.60792 * 270.88079 * 23 22 21 37 37 H 1.08999 * 113.61096 * 139.98375 * 23 22 21 38 38 H 1.09001 * 113.61497 * 220.01803 * 24 23 22 39 39 H 1.09000 * 113.69153 * 89.13224 * 24 23 22 40 40 H 1.08001 * 120.53311 * 180.28514 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8584 1.1609 2.4116 15 6 2.6416 -0.7166 3.5667 16 6 2.9799 -2.0741 3.5249 17 6 3.4362 -2.6883 4.6730 18 7 3.5567 -2.0152 5.8012 19 6 3.2491 -0.7327 5.8871 20 8 3.3918 -0.0867 7.0718 21 6 3.8766 -0.8547 8.1751 22 6 2.8335 -1.0640 9.2856 23 6 3.9758 -0.8446 10.2915 24 6 4.6802 -0.0296 9.1941 25 6 2.7876 -0.0370 4.7771 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7087 1.1613 -3.4844 30 1 2.2492 -1.6317 1.1525 31 1 2.8843 -2.6336 2.6061 32 1 3.6987 -3.7356 4.6478 33 1 4.3764 -1.7724 7.8650 34 1 2.0684 -0.2884 9.3178 35 1 2.4178 -2.0713 9.3098 36 1 4.5020 -1.7603 10.5611 37 1 3.6861 -0.2508 11.1584 38 1 5.7554 -0.2018 9.1445 39 1 4.4211 1.0291 9.2003 40 1 2.5416 1.0121 4.8503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134224619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:41 Heat of formation + Delta-G solvation = -39.595286 kcal Electronic energy + Delta-G solvation = -22162.113056 eV Core-core repulsion = 18749.125683 eV Total energy + Delta-G solvation = -3412.987374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.94574 -40.73311 -39.66086 -37.38234 -36.83269 -34.54332 -33.64734 -31.64502 -30.65056 -27.36839 -26.78331 -26.63722 -25.35693 -24.35046 -22.95121 -21.49737 -20.59276 -20.16408 -18.65074 -18.13505 -17.45288 -16.95586 -16.77349 -16.68103 -16.26323 -15.96461 -15.87077 -15.67918 -15.07206 -14.81359 -14.47458 -14.17306 -13.73440 -13.45082 -13.42831 -13.02817 -12.98092 -12.89466 -12.74998 -12.46147 -12.28256 -12.23299 -12.16483 -11.47706 -11.24782 -11.21173 -11.15084 -11.03509 -10.66690 -10.59587 -9.87663 -9.56807 -8.17922 -6.35994 -0.39350 0.07890 1.46829 1.48978 1.56713 1.85819 1.86760 2.31851 2.51048 2.76682 3.12937 3.24276 3.57858 3.60478 3.62124 3.88707 3.89746 3.91677 3.99721 4.11505 4.54198 4.62019 4.68930 4.74913 4.77282 4.79839 4.89745 4.97973 5.02615 5.03322 5.05727 5.11705 5.22498 5.37964 5.46310 5.54347 5.64678 5.85526 6.06003 6.23653 6.68680 6.70379 6.80106 7.25270 7.40876 8.88434 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040872 B = 0.002811 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.897941 B = 9956.895266 C =10299.106175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.078 0.922 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.288 1.288 10 H -0.270 1.270 11 H -0.262 1.262 12 N -0.687 5.687 13 C 0.540 3.460 14 O -0.588 6.588 15 C -0.055 4.055 16 C -0.173 4.173 17 C 0.150 3.850 18 N -0.531 5.531 19 C 0.314 3.686 20 O -0.307 6.307 21 C 0.044 3.956 22 C -0.154 4.154 23 C -0.124 4.124 24 C -0.137 4.137 25 C -0.158 4.158 26 H 0.044 0.956 27 H 0.011 0.989 28 H 0.069 0.931 29 H 0.266 0.734 30 H 0.408 0.592 31 H 0.169 0.831 32 H 0.212 0.788 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.925 -10.642 21.055 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.019 0.981 4 C -0.586 4.586 5 H 0.096 0.904 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.214 1.214 10 H -0.196 1.196 11 H -0.186 1.186 12 N -0.336 5.336 13 C 0.326 3.674 14 O -0.470 6.470 15 C -0.066 4.066 16 C -0.193 4.193 17 C -0.006 4.006 18 N -0.255 5.255 19 C 0.136 3.864 20 O -0.215 6.215 21 C -0.011 4.011 22 C -0.192 4.192 23 C -0.162 4.162 24 C -0.175 4.175 25 C -0.180 4.180 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.245 0.755 31 H 0.187 0.813 32 H 0.229 0.771 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.874 -9.829 21.742 24.831 hybrid contribution -0.250 0.298 -1.785 1.827 sum 6.624 -9.531 19.957 23.087 Atomic orbital electron populations 1.21921 0.98005 0.99795 0.99714 1.18457 0.91346 0.92081 0.81494 0.98128 1.21488 1.32851 1.13791 0.90458 0.90366 1.25827 0.94809 0.95571 1.02414 1.70051 1.36838 1.23912 1.24769 0.85352 0.78623 0.78756 0.77346 1.21389 1.19554 1.18604 1.46182 1.63894 1.14397 1.09138 1.18672 0.78276 0.86332 0.84093 1.90715 1.52863 1.17707 1.85703 1.20156 0.98517 0.95379 0.92511 1.22514 1.01422 0.92878 1.02501 1.23096 0.91398 1.01099 0.84993 1.67199 1.20543 1.07090 1.30688 1.19583 0.92224 0.88296 0.86273 1.86355 1.79929 1.38785 1.16389 1.24553 0.97631 0.96758 0.82183 1.23464 0.97780 1.02839 0.95072 1.22622 0.96111 1.01095 0.96337 1.23310 1.00204 1.00153 0.93783 1.21054 1.04268 1.01971 0.90703 0.93672 0.97006 0.91195 0.92493 0.75455 0.81334 0.77106 0.86540 0.90008 0.90410 0.88159 0.89228 0.89618 0.89529 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.85 9.26 71.98 0.67 -6.18 16 2 C 0.27 13.88 2.56 44.24 0.11 13.99 16 3 H 0.00 0.05 7.58 -2.38 -0.02 0.03 16 4 C -0.55 -28.32 8.73 25.60 0.22 -28.10 16 5 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.15 11.32 21.45 0.24 -51.91 16 8 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 9 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 12 N -0.69 -28.39 5.03 -448.68 -2.26 -30.65 16 13 C 0.54 22.67 7.76 86.88 0.67 23.34 16 14 O -0.59 -30.17 16.10 -3.75 -0.06 -30.23 16 15 C -0.05 -1.78 5.91 -19.90 -0.12 -1.90 16 16 C -0.17 -3.97 9.61 22.63 0.22 -3.75 16 17 C 0.15 2.85 11.17 84.62 0.94 3.80 16 18 N -0.53 -12.69 8.56 -309.13 -2.65 -15.34 16 19 C 0.31 8.94 7.49 84.80 0.63 9.57 16 20 O -0.31 -8.28 10.13 -90.14 -0.91 -9.19 16 21 C 0.04 0.88 4.18 31.12 0.13 1.01 16 22 C -0.15 -2.46 7.91 31.12 0.25 -2.22 16 23 C -0.12 -1.40 8.08 31.12 0.25 -1.15 16 24 C -0.14 -2.05 7.91 31.12 0.25 -1.80 16 25 C -0.16 -5.15 9.61 22.75 0.22 -4.94 16 26 H 0.04 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 29 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 30 H 0.41 13.55 6.68 -92.70 -0.62 12.93 16 31 H 0.17 2.96 6.53 -2.91 -0.02 2.94 16 32 H 0.21 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.12 2.26 6.87 -2.38 -0.02 2.25 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.13 4.72 7.74 -2.91 -0.02 4.70 16 Total: -1.00 -69.48 338.18 1.73 -67.75 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.44 Total: 23.60 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 4.90 Total: 2.87 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -4.66 Total: -97.89 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.97 Total: -39.42 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -69.48 1.73 -67.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134224619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.150 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds