Wall clock time and date at job start Tue Mar 31 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47122 * 2 1 4 4 O 1.21256 * 120.00605 * 0.02562 * 3 2 1 5 5 C 1.47185 * 119.99897 * 179.97438 * 3 2 1 6 6 C 1.39890 * 120.13644 * 359.73225 * 5 3 2 7 7 C 1.37910 * 119.95998 * 179.69214 * 6 5 3 8 8 C 1.38295 * 120.25704 * 0.57866 * 7 6 5 9 9 C 1.38988 * 120.27808 * 359.71539 * 8 7 6 10 10 N 1.39979 * 119.98754 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00180 * 144.87147 * 10 9 8 12 12 O 1.21586 * 119.99693 * 4.58537 * 11 10 9 13 13 N 1.34777 * 119.99966 * 184.57699 * 11 10 9 14 14 C 1.46501 * 120.00093 * 0.02562 * 13 11 10 15 15 C 1.46503 * 119.99695 * 179.97438 * 13 11 10 16 16 C 1.50700 * 109.46670 * 90.00508 * 15 13 11 17 17 H 1.08000 * 120.00389 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99985 * 180.02562 * 16 15 13 19 19 N 1.31521 * 119.99659 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00452 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47305 * 59.99588 * 20 18 16 22 22 H 1.48506 * 109.47262 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46650 * 299.99568 * 20 18 16 24 24 C 1.38566 * 120.02655 * 359.97438 * 9 8 7 25 25 H 1.08998 * 109.47528 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47284 * 299.99990 * 1 2 3 27 27 H 1.09000 * 109.47257 * 59.99502 * 1 2 3 28 28 H 1.09005 * 109.46667 * 120.00118 * 2 1 3 29 29 H 1.08995 * 109.46808 * 239.99901 * 2 1 3 30 30 H 1.08001 * 120.01928 * 359.97438 * 6 5 3 31 31 H 1.08004 * 119.87350 * 180.27659 * 7 6 5 32 32 H 1.08002 * 119.86591 * 179.74007 * 8 7 6 33 33 H 0.97006 * 119.99543 * 324.87034 * 10 9 8 34 34 H 1.08997 * 109.47055 * 89.99774 * 14 13 11 35 35 H 1.09004 * 109.46720 * 210.00104 * 14 13 11 36 36 H 1.09001 * 109.47235 * 329.99431 * 14 13 11 37 37 H 1.09000 * 109.46966 * 209.99880 * 15 13 11 38 38 H 1.09000 * 109.47265 * 330.00457 * 15 13 11 39 39 H 0.97000 * 120.00176 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.11890 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2445 2.3425 0.0005 5 6 3.4794 1.6897 0.0006 6 6 4.3909 0.6286 0.0068 7 6 5.7460 0.8847 0.0009 8 6 6.2089 2.1879 0.0009 9 6 5.3124 3.2500 0.0009 10 7 5.7876 4.5666 0.0004 11 6 5.1183 5.5244 -0.6713 12 8 4.0584 5.2635 -1.2069 13 7 5.6237 6.7714 -0.7490 14 6 6.9010 7.0856 -0.1039 15 6 4.8964 7.8123 -1.4796 16 6 3.9574 8.5230 -0.5392 17 1 3.9071 8.2285 0.4986 18 6 3.1617 9.5486 -1.0041 19 7 3.2225 9.9069 -2.2681 20 14 1.9983 10.4301 0.1616 21 1 2.7773 11.0513 1.2626 22 1 1.2609 11.4852 -0.5790 23 1 1.0321 9.4549 0.7278 24 6 3.9484 3.0060 0.0003 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 4.0337 -0.3906 0.0116 31 1 6.4486 0.0643 0.0011 32 1 7.2715 2.3812 0.0005 33 1 6.5987 4.7897 0.4835 34 1 7.7158 6.9079 -0.8056 35 1 6.9060 8.1320 0.2014 36 1 7.0312 6.4508 0.7726 37 1 5.6059 8.5283 -1.8944 38 1 4.3249 7.3568 -2.2883 39 1 2.6630 10.6286 -2.5951 40 1 3.2505 3.8302 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152564592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:49 Heat of formation + Delta-G solvation = -58.158373 kcal Electronic energy + Delta-G solvation = -22597.823435 eV Core-core repulsion = 19184.031105 eV Total energy + Delta-G solvation = -3413.792329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79695 -40.76502 -39.19271 -36.77438 -35.90634 -34.69023 -33.81508 -32.10239 -30.88446 -29.47037 -27.41442 -26.57273 -25.25334 -23.65449 -23.28287 -21.05571 -20.66879 -19.18094 -18.72828 -18.39350 -17.36219 -16.92043 -16.72439 -16.47495 -16.41056 -16.31176 -15.47413 -15.23374 -14.92756 -14.64256 -14.40855 -14.28979 -13.94053 -13.56526 -13.47249 -13.24135 -13.13680 -12.91622 -12.80875 -12.72418 -12.59198 -12.38912 -12.20976 -12.02995 -11.80289 -11.48228 -10.98680 -10.69458 -10.67945 -9.92710 -9.62662 -9.06584 -8.26021 -6.41144 -0.30399 0.39360 1.31420 1.37090 1.42163 1.44396 1.69058 2.13602 2.35366 2.88904 2.94021 3.03043 3.12480 3.91773 4.03623 4.16868 4.22318 4.25110 4.28263 4.36276 4.46783 4.59764 4.64276 4.75414 4.83676 4.92707 4.97605 5.01777 5.05148 5.14589 5.30739 5.34767 5.37590 5.42058 5.49809 5.55628 5.74557 6.01111 6.01504 6.05553 6.60344 6.66876 7.00426 7.25912 7.57824 8.80376 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.004335 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.357576 B = 6457.386751 C = 7958.940489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 C 0.381 3.619 4 O -0.509 6.509 5 C -0.177 4.177 6 C -0.077 4.077 7 C -0.102 4.102 8 C -0.107 4.107 9 C 0.133 3.867 10 N -0.676 5.676 11 C 0.688 3.312 12 O -0.624 6.624 13 N -0.620 5.620 14 C 0.078 3.922 15 C 0.277 3.723 16 C -0.547 4.547 17 H 0.049 0.951 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.285 1.285 24 C -0.107 4.107 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.164 0.836 33 H 0.422 0.578 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.034 0.966 38 H -0.004 1.004 39 H 0.268 0.732 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.144 -23.932 7.914 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.262 3.738 4 O -0.388 6.388 5 C -0.179 4.179 6 C -0.095 4.095 7 C -0.120 4.120 8 C -0.128 4.128 9 C 0.038 3.962 10 N -0.327 5.327 11 C 0.390 3.610 12 O -0.504 6.504 13 N -0.354 5.354 14 C -0.064 4.064 15 C 0.155 3.845 16 C -0.586 4.586 17 H 0.067 0.933 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.211 1.211 24 C -0.128 4.128 25 H 0.112 0.888 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.195 0.805 31 H 0.200 0.800 32 H 0.181 0.819 33 H 0.263 0.737 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.014 0.986 39 H 0.077 0.923 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.969 -23.369 7.377 26.096 hybrid contribution -0.744 1.679 0.337 1.867 sum 8.225 -21.690 7.714 24.446 Atomic orbital electron populations 1.21640 0.94608 1.02988 1.01299 1.22060 0.97503 0.92157 1.07501 1.23541 0.87871 0.93021 0.69338 1.90568 1.59613 1.50187 1.38410 1.20649 0.95994 0.93602 1.07656 1.21834 0.92702 0.98986 0.95999 1.21477 0.95890 0.96386 0.98197 1.21551 1.00196 0.91363 0.99666 1.17809 0.92376 0.84000 1.01975 1.42567 1.30372 1.05907 1.53902 1.16214 0.83335 0.81546 0.79928 1.90898 1.24420 1.81414 1.53649 1.47373 1.24136 1.07949 1.55977 1.21923 0.83534 1.03200 0.97734 1.18688 0.90901 0.84049 0.90851 1.21690 1.23553 1.17217 0.96131 0.93275 1.25823 0.98391 0.97736 0.96971 1.70032 1.41036 1.30034 1.15463 0.85511 0.78673 0.77838 0.79034 1.18027 1.19838 1.21145 1.21513 0.95606 0.97352 0.98328 0.88763 0.93974 0.94438 0.84609 0.85194 0.80456 0.80043 0.81851 0.73736 0.90565 0.90769 0.89518 0.94837 0.98623 0.92275 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.20 71.98 0.66 -2.12 16 2 C -0.16 -2.48 5.03 29.85 0.15 -2.33 16 3 C 0.38 11.32 7.12 28.04 0.20 11.52 16 4 O -0.51 -21.49 15.97 -2.95 -0.05 -21.54 16 5 C -0.18 -5.08 5.87 -20.16 -0.12 -5.20 16 6 C -0.08 -1.23 9.47 22.59 0.21 -1.02 16 7 C -0.10 -1.35 10.02 22.21 0.22 -1.13 16 8 C -0.11 -2.02 9.96 22.46 0.22 -1.80 16 9 C 0.13 4.15 6.29 38.10 0.24 4.39 16 10 N -0.68 -22.25 5.21 -317.29 -1.65 -23.91 16 11 C 0.69 31.86 8.12 179.05 1.45 33.31 16 12 O -0.62 -36.38 13.35 -3.99 -0.05 -36.44 16 13 N -0.62 -27.83 2.86 -869.30 -2.48 -30.31 16 14 C 0.08 2.33 10.24 127.77 1.31 3.64 16 15 C 0.28 15.66 5.16 85.63 0.44 16.10 16 16 C -0.55 -33.24 9.39 25.60 0.24 -33.00 16 17 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 18 C 0.01 0.61 5.46 84.65 0.46 1.07 16 19 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 20 Si 0.97 47.27 29.54 68.60 2.03 49.30 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 24 C -0.11 -4.10 8.24 22.71 0.19 -3.91 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 27 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 28 H 0.14 1.17 8.08 -2.38 -0.02 1.16 16 29 H 0.13 1.30 8.09 -2.39 -0.02 1.28 16 30 H 0.18 1.11 7.04 -2.91 -0.02 1.09 16 31 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.42 9.83 6.52 -92.70 -0.60 9.22 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 36 H 0.09 1.91 6.30 -2.39 -0.02 1.89 16 37 H 0.03 1.87 8.07 -2.39 -0.02 1.85 16 38 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 39 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.09 4.69 5.81 -2.91 -0.02 4.68 16 Total: -1.00 -93.84 341.23 4.41 -89.43 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.45 Total: 11.64 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 5.89 Total: 19.53 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -3.85 Total: -111.93 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -0.10 Total: -57.97 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -93.84 4.41 -89.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152564592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.271 kcal (2) G-P(sol) polarization free energy of solvation -93.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds