Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47752 * 2 1 4 4 C 1.50711 * 109.46687 * 120.00198 * 2 1 3 5 5 O 1.21287 * 119.99744 * 119.99611 * 4 2 1 6 6 N 1.34773 * 119.99808 * 300.00022 * 4 2 1 7 7 C 1.39989 * 119.99929 * 174.55122 * 6 4 2 8 8 C 1.38919 * 119.99924 * 325.27007 * 7 6 4 9 9 C 1.38005 * 120.00016 * 180.23204 * 8 7 6 10 10 C 1.38918 * 119.99713 * 359.50110 * 9 8 7 11 11 O 1.35775 * 119.99463 * 180.25005 * 10 9 8 12 12 C 1.34821 * 116.99743 * 185.84677 * 11 10 9 13 13 H 1.07998 * 119.99788 * 5.35892 * 12 11 10 14 14 C 1.38633 * 120.00089 * 185.35271 * 12 11 10 15 15 N 1.31570 * 119.99795 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99734 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46720 * 90.00695 * 16 14 12 18 18 H 1.48502 * 109.47026 * 209.99986 * 16 14 12 19 19 H 1.48497 * 109.47693 * 330.00430 * 16 14 12 20 20 C 1.38904 * 120.00415 * 0.50148 * 10 9 8 21 21 C 1.38003 * 119.99933 * 359.75173 * 20 10 9 22 22 C 1.52999 * 109.47178 * 239.99451 * 2 1 3 23 23 C 1.53932 * 113.73206 * 156.73183 * 22 2 1 24 24 N 1.47964 * 86.18241 * 221.92490 * 23 22 2 25 25 C 1.47966 * 90.75958 * 24.68934 * 24 23 22 26 26 H 1.08997 * 109.47255 * 300.00434 * 1 2 3 27 27 H 1.09007 * 109.46544 * 59.99800 * 1 2 3 28 28 H 1.08995 * 109.47752 * 179.97438 * 1 2 3 29 29 H 0.96999 * 119.99985 * 354.54439 * 6 4 2 30 30 H 1.07999 * 120.00306 * 359.96580 * 8 7 6 31 31 H 1.07992 * 120.00315 * 179.74899 * 9 8 7 32 32 H 0.97005 * 119.99587 * 179.97438 * 15 14 12 33 33 H 1.07996 * 120.00355 * 179.72042 * 20 10 9 34 34 H 1.08002 * 120.00306 * 179.97438 * 21 20 10 35 35 H 1.09000 * 112.94439 * 288.44161 * 22 2 1 36 36 H 1.09002 * 113.76177 * 336.24094 * 23 22 2 37 37 H 1.09004 * 113.75703 * 107.61133 * 23 22 2 38 38 H 1.00900 * 110.99647 * 271.80271 * 24 23 22 39 39 H 1.08996 * 113.75869 * 220.99212 * 25 24 23 40 40 H 1.08995 * 113.75714 * 89.63082 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 1.2306 5 8 2.7295 -1.6967 1.1192 6 7 1.7066 -0.2501 2.4546 7 6 2.0763 -0.9724 3.5953 8 6 2.0951 -2.3611 3.5623 9 6 2.4548 -3.0733 4.6883 10 6 2.8082 -2.4014 5.8516 11 8 3.1671 -3.1021 6.9579 12 6 3.3807 -2.3965 8.0866 13 1 3.1811 -1.3353 8.1060 14 6 3.8566 -3.0332 9.2225 15 7 4.1001 -4.3259 9.1987 16 14 4.1533 -2.0553 10.7862 17 1 2.9170 -2.0505 11.6090 18 1 5.2587 -2.6786 11.5575 19 1 4.5199 -0.6597 10.4354 20 6 2.7894 -1.0128 5.8848 21 6 2.4246 -0.3007 4.7604 22 6 2.0400 -0.7214 -1.2492 23 6 3.4671 -0.3156 -1.6597 24 7 2.9606 -0.3148 -3.0499 25 6 1.5823 -0.0739 -2.5686 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.2162 0.5819 2.5452 30 1 1.8240 -2.8834 2.6567 31 1 2.4655 -4.1529 4.6638 32 1 4.4334 -4.7713 9.9934 33 1 3.0598 -0.4906 6.7906 34 1 2.4095 0.7789 4.7862 35 1 1.8823 -1.7992 -1.2116 36 1 3.7642 0.6695 -1.3000 37 1 4.2152 -1.0842 -1.4653 38 1 3.0436 -1.2305 -3.4655 39 1 0.8246 -0.6493 -3.1005 40 1 1.3282 0.9818 -2.4748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164382830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -2.864824 kcal Electronic energy + Delta-G solvation = -22288.086092 eV Core-core repulsion = 18876.691471 eV Total energy + Delta-G solvation = -3411.394621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72188 -39.47196 -38.52666 -36.49141 -34.19647 -33.30645 -32.15958 -30.24624 -27.98180 -27.06467 -26.13367 -25.40045 -23.94613 -22.29122 -21.47468 -20.38702 -19.78599 -18.03131 -17.54438 -17.16682 -16.63702 -16.27691 -15.34131 -14.95778 -14.58995 -14.34153 -14.17738 -13.93677 -13.56721 -13.38365 -13.14415 -12.82549 -12.78758 -12.60426 -12.55221 -12.43699 -11.83793 -11.66771 -11.58131 -11.56506 -11.08980 -11.05833 -10.81764 -10.67645 -10.45942 -9.73901 -9.60117 -9.25149 -8.79011 -8.72595 -8.23364 -6.94570 -6.45994 -4.04085 2.06116 2.17417 2.85450 3.12202 3.12724 3.17434 3.25244 3.75893 3.95579 4.13980 4.36132 4.54765 4.62681 4.86756 4.97466 5.06151 5.09880 5.18316 5.29060 5.35053 5.37083 5.45375 5.52773 5.54771 5.67716 5.72375 5.75946 5.82714 5.99350 6.12704 6.21074 6.25545 6.76582 6.83496 6.96691 6.99840 7.13481 7.20060 7.38827 7.69020 7.76588 7.98326 8.36169 8.99322 9.69682 10.72018 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042088 B = 0.002773 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.111848 B =10096.596751 C =10272.057612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.098 0.902 4 C 0.509 3.491 5 O -0.525 6.525 6 N -0.661 5.661 7 C 0.036 3.964 8 C -0.066 4.066 9 C -0.178 4.178 10 C 0.147 3.853 11 O -0.176 6.176 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.219 4.219 21 C -0.090 4.090 22 C -0.134 4.134 23 C 0.025 3.975 24 N -0.664 5.664 25 C 0.022 3.978 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.401 0.599 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.270 0.730 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.337 0.663 39 H 0.072 0.928 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 10.749 -17.644 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.116 0.884 4 C 0.296 3.704 5 O -0.401 6.401 6 N -0.306 5.306 7 C -0.056 4.056 8 C -0.086 4.086 9 C -0.198 4.198 10 C 0.093 3.907 11 O -0.080 6.080 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.496 5.496 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.239 4.239 21 C -0.111 4.111 22 C -0.154 4.154 23 C -0.105 4.105 24 N -0.290 5.290 25 C -0.108 4.108 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.235 0.765 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.091 0.909 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.416 10.324 -17.937 21.668 hybrid contribution -0.380 0.123 1.432 1.486 sum -6.795 10.447 -16.506 20.682 Atomic orbital electron populations 1.21755 0.92661 1.02985 1.02695 1.21363 0.97615 1.00625 0.92801 0.88420 1.20641 0.80136 0.85312 0.84358 1.90713 1.36469 1.26428 1.86441 1.43281 1.56676 1.25955 1.04647 1.17241 1.10566 0.90982 0.86814 1.20541 0.98823 0.91967 0.97262 1.20121 1.08498 0.99657 0.91527 1.19412 0.92737 0.90456 0.88101 1.84005 1.74213 1.34600 1.15142 1.21308 1.45528 0.93718 0.86236 0.89101 1.25295 0.96241 0.96115 0.98912 1.70048 1.41356 1.08458 1.29783 0.85712 0.78432 0.79083 0.80187 1.19876 1.20251 1.19213 1.20983 1.09593 0.93907 0.99397 1.20488 0.99811 0.98318 0.92438 1.24110 0.96662 1.01286 0.93310 1.23660 0.96040 1.02187 0.88566 1.65075 1.09897 1.34960 1.19061 1.23711 0.92252 1.01580 0.93294 0.91896 0.91322 0.91953 0.76510 0.86081 0.86159 0.91989 0.85105 0.87195 0.88144 0.88778 0.90446 0.84866 0.90926 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.90 37.16 0.33 -0.64 16 2 C -0.10 -0.88 2.49 -91.76 -0.23 -1.11 16 3 H 0.10 0.70 7.94 -51.93 -0.41 0.29 16 4 C 0.51 6.73 6.88 -10.98 -0.08 6.65 16 5 O -0.52 -9.11 13.64 5.55 0.08 -9.03 16 6 N -0.66 -8.69 5.19 -9.82 -0.05 -8.74 16 7 C 0.04 0.64 6.25 -83.63 -0.52 0.11 16 8 C -0.07 -1.29 8.64 -39.41 -0.34 -1.63 16 9 C -0.18 -3.92 9.99 -39.42 -0.39 -4.32 16 10 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 11 O -0.18 -5.05 9.76 0.00 0.00 -5.05 16 12 C -0.39 -10.89 9.44 30.88 0.29 -10.60 16 13 H 0.09 2.32 5.28 -52.49 -0.28 2.04 16 14 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 16 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 C -0.22 -4.69 9.13 -39.42 -0.36 -5.05 16 21 C -0.09 -1.62 9.96 -39.41 -0.39 -2.01 16 22 C -0.13 -1.19 2.70 -89.69 -0.24 -1.44 16 23 C 0.03 0.24 8.45 -2.77 -0.02 0.22 16 24 N -0.66 -5.87 8.56 -117.00 -1.00 -6.88 16 25 C 0.02 0.16 7.52 -2.76 -0.02 0.13 16 26 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 27 H 0.07 0.35 7.43 -51.92 -0.39 -0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.40 3.82 8.42 -40.82 -0.34 3.47 16 30 H 0.12 2.29 6.52 -52.49 -0.34 1.95 16 31 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.13 2.78 5.70 -52.49 -0.30 2.48 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.10 1.05 7.85 -51.93 -0.41 0.64 16 36 H 0.09 0.88 7.96 -51.93 -0.41 0.47 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.34 2.62 8.89 -39.29 -0.35 2.28 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.63 8.06 -51.93 -0.42 0.21 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -32.90 334.77 -7.83 -40.73 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.30 Total: 8.51 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.33 Total: -15.39 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.29 Total: -40.17 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.08 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.90 -7.83 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164382830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.866 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds