Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47752 * 2 1 4 4 C 1.50711 * 109.46687 * 120.00198 * 2 1 3 5 5 O 1.21287 * 119.99744 * 119.99611 * 4 2 1 6 6 N 1.34773 * 119.99808 * 300.00022 * 4 2 1 7 7 C 1.39989 * 119.99929 * 174.55122 * 6 4 2 8 8 C 1.38919 * 119.99924 * 325.27007 * 7 6 4 9 9 C 1.38005 * 120.00016 * 180.23204 * 8 7 6 10 10 C 1.38918 * 119.99713 * 359.50110 * 9 8 7 11 11 O 1.35775 * 119.99463 * 180.25005 * 10 9 8 12 12 C 1.34821 * 116.99743 * 185.84677 * 11 10 9 13 13 H 1.07998 * 119.99788 * 5.35892 * 12 11 10 14 14 C 1.38633 * 120.00089 * 185.35271 * 12 11 10 15 15 N 1.31570 * 119.99795 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99734 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46720 * 90.00695 * 16 14 12 18 18 H 1.48502 * 109.47026 * 209.99986 * 16 14 12 19 19 H 1.48497 * 109.47693 * 330.00430 * 16 14 12 20 20 C 1.38904 * 120.00415 * 0.50148 * 10 9 8 21 21 C 1.38003 * 119.99933 * 359.75173 * 20 10 9 22 22 C 1.52999 * 109.47178 * 239.99451 * 2 1 3 23 23 C 1.53932 * 113.73206 * 156.73183 * 22 2 1 24 24 N 1.47964 * 86.18241 * 221.92490 * 23 22 2 25 25 C 1.47966 * 90.75958 * 24.68934 * 24 23 22 26 26 H 1.08997 * 109.47255 * 300.00434 * 1 2 3 27 27 H 1.09007 * 109.46544 * 59.99800 * 1 2 3 28 28 H 1.08995 * 109.47752 * 179.97438 * 1 2 3 29 29 H 0.96999 * 119.99985 * 354.54439 * 6 4 2 30 30 H 1.07999 * 120.00306 * 359.96580 * 8 7 6 31 31 H 1.07992 * 120.00315 * 179.74899 * 9 8 7 32 32 H 0.97005 * 119.99587 * 179.97438 * 15 14 12 33 33 H 1.07996 * 120.00355 * 179.72042 * 20 10 9 34 34 H 1.08002 * 120.00306 * 179.97438 * 21 20 10 35 35 H 1.09000 * 112.94439 * 288.44161 * 22 2 1 36 36 H 1.09002 * 113.76177 * 336.24094 * 23 22 2 37 37 H 1.09004 * 113.75703 * 107.61133 * 23 22 2 38 38 H 1.00900 * 110.99647 * 271.80271 * 24 23 22 39 39 H 1.08996 * 113.75869 * 220.99212 * 25 24 23 40 40 H 1.08995 * 113.75714 * 89.63082 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 1.2306 5 8 2.7295 -1.6967 1.1192 6 7 1.7066 -0.2501 2.4546 7 6 2.0763 -0.9724 3.5953 8 6 2.0951 -2.3611 3.5623 9 6 2.4548 -3.0733 4.6883 10 6 2.8082 -2.4014 5.8516 11 8 3.1671 -3.1021 6.9579 12 6 3.3807 -2.3965 8.0866 13 1 3.1811 -1.3353 8.1060 14 6 3.8566 -3.0332 9.2225 15 7 4.1001 -4.3259 9.1987 16 14 4.1533 -2.0553 10.7862 17 1 2.9170 -2.0505 11.6090 18 1 5.2587 -2.6786 11.5575 19 1 4.5199 -0.6597 10.4354 20 6 2.7894 -1.0128 5.8848 21 6 2.4246 -0.3007 4.7604 22 6 2.0400 -0.7214 -1.2492 23 6 3.4671 -0.3156 -1.6597 24 7 2.9606 -0.3148 -3.0499 25 6 1.5823 -0.0739 -2.5686 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.2162 0.5819 2.5452 30 1 1.8240 -2.8834 2.6567 31 1 2.4655 -4.1529 4.6638 32 1 4.4334 -4.7713 9.9934 33 1 3.0598 -0.4906 6.7906 34 1 2.4095 0.7789 4.7862 35 1 1.8823 -1.7992 -1.2116 36 1 3.7642 0.6695 -1.3000 37 1 4.2152 -1.0842 -1.4653 38 1 3.0436 -1.2305 -3.4655 39 1 0.8246 -0.6493 -3.1005 40 1 1.3282 0.9818 -2.4748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164382830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -27.864221 kcal Electronic energy + Delta-G solvation = -22289.170147 eV Core-core repulsion = 18876.691471 eV Total energy + Delta-G solvation = -3412.478676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.77208 -40.75000 -39.89863 -38.10789 -35.48302 -34.39352 -33.93817 -31.89939 -29.54179 -27.70668 -27.37830 -26.74685 -24.94400 -23.90982 -22.85302 -21.46301 -20.72624 -19.83054 -18.99522 -18.52691 -17.77602 -17.30317 -16.53667 -16.36540 -15.97772 -15.81939 -15.53454 -15.22584 -14.95961 -14.58728 -14.53562 -14.19451 -13.80253 -13.57675 -13.45096 -13.31446 -13.27475 -13.16398 -13.04675 -12.73740 -12.44748 -12.29147 -12.11844 -11.70896 -11.52339 -11.40199 -11.05942 -10.73746 -10.52662 -9.86943 -9.46554 -8.61369 -8.46447 -6.13858 0.49573 0.52217 1.36420 1.44805 1.54334 1.69572 2.14262 2.19238 2.81836 3.09542 3.15390 3.42645 3.49334 3.67226 3.78862 4.04841 4.10547 4.22903 4.33507 4.39461 4.47257 4.56185 4.62832 4.74048 4.74678 4.79041 4.83632 4.93699 5.02947 5.06577 5.11294 5.15493 5.28683 5.29921 5.36134 5.45062 5.55826 5.67203 6.01582 6.15338 6.35542 6.56756 6.97859 7.26818 7.78607 8.77107 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042088 B = 0.002773 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.111848 B =10096.596751 C =10272.057612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.126 0.874 4 C 0.507 3.493 5 O -0.569 6.569 6 N -0.650 5.650 7 C 0.065 3.935 8 C -0.072 4.072 9 C -0.190 4.190 10 C 0.107 3.893 11 O -0.232 6.232 12 C -0.412 4.412 13 H 0.106 0.894 14 C -0.026 4.026 15 N -0.923 5.923 16 Si 1.021 2.979 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.249 1.249 20 C -0.220 4.220 21 C -0.081 4.081 22 C -0.134 4.134 23 C 0.020 3.980 24 N -0.674 5.674 25 C 0.034 3.966 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.424 0.576 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.272 0.728 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.340 0.660 39 H 0.086 0.914 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.791 14.851 -19.309 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.144 0.856 4 C 0.296 3.704 5 O -0.447 6.447 6 N -0.297 5.297 7 C -0.029 4.029 8 C -0.092 4.092 9 C -0.210 4.210 10 C 0.056 3.944 11 O -0.139 6.139 12 C -0.488 4.488 13 H 0.124 0.876 14 C -0.223 4.223 15 N -0.561 5.561 16 Si 0.840 3.160 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.173 1.173 20 C -0.240 4.240 21 C -0.101 4.101 22 C -0.154 4.154 23 C -0.110 4.110 24 N -0.300 5.300 25 C -0.095 4.095 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.263 0.737 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.105 0.895 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.941 14.492 -19.676 25.695 hybrid contribution -0.014 -1.067 1.547 1.880 sum -7.956 13.424 -18.128 23.919 Atomic orbital electron populations 1.21795 0.90672 1.02738 1.04674 1.21409 0.98985 1.01066 0.89632 0.85616 1.21595 0.78862 0.84642 0.85315 1.90716 1.38360 1.28550 1.87047 1.43264 1.56712 1.26464 1.03302 1.17383 1.06816 0.90481 0.88189 1.20652 0.98875 0.93286 0.96398 1.20244 1.09065 0.99667 0.92053 1.19860 0.94498 0.92077 0.87920 1.83968 1.77107 1.36321 1.16473 1.21863 1.45701 0.94525 0.86722 0.87636 1.26646 0.95690 0.97263 1.02684 1.70208 1.44042 1.10779 1.31120 0.84556 0.78574 0.77961 0.74926 1.18738 1.19910 1.17283 1.21143 1.09265 0.92758 1.00785 1.20862 0.97840 1.00521 0.90865 1.24060 0.96401 1.00349 0.94598 1.23667 0.96093 1.01814 0.89453 1.65097 1.11114 1.35316 1.18506 1.23775 0.91681 1.02537 0.91555 0.90579 0.88767 0.93349 0.73678 0.85578 0.87128 0.91883 0.85072 0.82390 0.90285 0.88189 0.92537 0.84542 0.89529 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.90 71.98 0.64 -0.65 16 2 C -0.09 -1.21 2.49 -11.54 -0.03 -1.24 16 3 H 0.13 1.11 7.94 -2.39 -0.02 1.10 16 4 C 0.51 12.00 6.88 87.66 0.60 12.60 16 5 O -0.57 -19.16 13.64 -3.05 -0.04 -19.21 16 6 N -0.65 -14.60 5.19 -303.37 -1.57 -16.18 16 7 C 0.07 2.12 6.25 38.17 0.24 2.36 16 8 C -0.07 -2.80 8.64 22.38 0.19 -2.61 16 9 C -0.19 -8.76 9.99 22.38 0.22 -8.54 16 10 C 0.11 5.43 6.65 22.59 0.15 5.58 16 11 O -0.23 -14.14 9.76 -22.93 -0.22 -14.36 16 12 C -0.41 -23.87 9.44 67.91 0.64 -23.23 16 13 H 0.11 5.49 5.28 -2.91 -0.02 5.47 16 14 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 15 N -0.92 -57.25 13.67 21.61 0.30 -56.95 16 16 Si 1.02 42.49 29.55 68.60 2.03 44.52 16 17 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 20 C -0.22 -9.32 9.13 22.37 0.20 -9.12 16 21 C -0.08 -2.65 9.96 22.38 0.22 -2.43 16 22 C -0.13 -2.08 2.70 -10.15 -0.03 -2.11 16 23 C 0.02 0.35 8.45 86.40 0.73 1.08 16 24 N -0.67 -10.56 8.56 -524.09 -4.48 -15.04 16 25 C 0.03 0.37 7.52 86.40 0.65 1.02 16 26 H 0.08 0.53 7.70 -2.39 -0.02 0.51 16 27 H 0.09 0.45 7.43 -2.38 -0.02 0.43 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.42 5.79 8.42 -92.71 -0.78 5.01 16 30 H 0.13 4.78 6.52 -2.91 -0.02 4.76 16 31 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 32 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 33 H 0.13 5.50 5.70 -2.91 -0.02 5.48 16 34 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.08 1.59 7.85 -2.39 -0.02 1.57 16 36 H 0.10 1.64 7.96 -2.39 -0.02 1.62 16 37 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.34 4.88 8.89 -89.69 -0.80 4.08 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.11 0.91 8.06 -2.39 -0.02 0.89 16 Total: -1.00 -77.82 334.77 0.41 -77.41 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.50 Total: 28.07 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 4.91 Total: -28.26 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -5.76 Total: -88.17 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.27 Total: -33.57 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -77.82 0.41 -77.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164382830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.547 kcal (2) G-P(sol) polarization free energy of solvation -77.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds