Wall clock time and date at job start Tue Mar 31 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 C 1.50694 * 109.47438 * 120.00641 * 2 1 3 5 5 H 1.07995 * 120.00407 * 119.99344 * 4 2 1 6 6 C 1.37884 * 119.99678 * 299.99821 * 4 2 1 7 7 N 1.31512 * 120.00183 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99791 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47451 * 59.99872 * 8 6 4 10 10 H 1.48498 * 109.47471 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47106 * 300.00088 * 8 6 4 12 12 N 1.46503 * 109.46698 * 240.00959 * 2 1 3 13 13 C 1.34767 * 120.00421 * 85.00147 * 12 2 1 14 14 O 1.21530 * 120.00132 * 359.97438 * 13 12 2 15 15 C 1.48040 * 120.00180 * 179.97438 * 13 12 2 16 16 C 1.39555 * 120.00389 * 179.97438 * 15 13 12 17 17 C 1.37811 * 120.00402 * 180.30190 * 16 15 13 18 18 C 1.39566 * 119.99715 * 359.49241 * 17 16 15 19 19 C 1.48028 * 119.99741 * 180.23403 * 18 17 16 20 20 O 1.21532 * 119.99508 * 206.34150 * 19 18 17 21 21 N 1.34770 * 120.00176 * 26.34880 * 19 18 17 22 22 C 1.46509 * 119.99786 * 184.75208 * 21 19 18 23 23 C 1.46500 * 120.00347 * 4.75627 * 21 19 18 24 24 C 1.39553 * 119.99742 * 0.48638 * 18 17 16 25 25 C 1.37822 * 120.00211 * 359.76923 * 24 18 17 26 26 H 1.08998 * 109.47071 * 299.99442 * 1 2 3 27 27 H 1.09002 * 109.47174 * 59.99520 * 1 2 3 28 28 H 1.09000 * 109.47417 * 179.97438 * 1 2 3 29 29 H 0.96996 * 119.99970 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99614 * 264.99150 * 12 2 1 31 31 H 1.08003 * 119.99701 * 0.02562 * 16 15 13 32 32 H 1.07993 * 120.00491 * 179.72839 * 17 16 15 33 33 H 1.09009 * 109.46618 * 90.00481 * 22 21 19 34 34 H 1.08998 * 109.47087 * 209.99872 * 22 21 19 35 35 H 1.08996 * 109.47116 * 330.00198 * 22 21 19 36 36 H 1.09000 * 109.47010 * 24.30395 * 23 21 19 37 37 H 1.08996 * 109.47384 * 144.30378 * 23 21 19 38 38 H 1.09001 * 109.46880 * 264.30424 * 23 21 19 39 39 H 1.08003 * 119.99871 * 179.74360 * 24 18 17 40 40 H 1.07999 * 119.99981 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3215 -1.1206 4.0077 9 1 3.8065 -1.1213 4.0080 10 1 1.8262 -0.4210 5.2204 11 1 1.8259 -2.5205 4.0074 12 7 2.0182 -0.6904 -1.1963 13 6 2.1470 -0.0180 -2.3572 14 8 1.8576 1.1611 -2.4117 15 6 2.6409 -0.7156 -3.5659 16 6 2.7737 -0.0195 -4.7681 17 6 3.2275 -0.6704 -5.8948 18 6 3.5645 -2.0233 -5.8310 19 6 4.0569 -2.7211 -7.0400 20 8 3.9022 -3.9212 -7.1542 21 7 4.6768 -2.0258 -8.0139 22 6 5.0712 -2.6966 -9.2554 23 6 4.9565 -0.5994 -7.8313 24 6 3.4321 -2.7193 -4.6287 25 6 2.9732 -2.0696 -3.5032 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7082 1.1606 3.4845 30 1 2.2490 -1.6316 -1.1529 31 1 2.5165 1.0284 -4.8166 32 1 3.3261 -0.1328 -6.8262 33 1 4.2576 -2.6311 -9.9779 34 1 5.9590 -2.2134 -9.6632 35 1 5.2901 -3.7441 -9.0486 36 1 5.0067 -0.3725 -6.7664 37 1 5.9089 -0.3529 -8.3006 38 1 4.1620 -0.0117 -8.2911 39 1 3.6889 -3.7672 -4.5803 40 1 2.8703 -2.6084 -2.5729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170850836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:22 Heat of formation + Delta-G solvation = -27.554537 kcal Electronic energy + Delta-G solvation = -22292.052367 eV Core-core repulsion = 18879.587120 eV Total energy + Delta-G solvation = -3412.465247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71206 -39.37842 -37.68158 -36.00522 -34.89181 -32.69291 -31.69374 -31.08377 -29.05627 -28.10045 -26.84038 -25.29491 -24.07200 -22.68871 -21.26096 -20.13720 -19.57770 -18.02761 -17.48640 -16.64716 -16.19630 -15.86948 -15.53092 -15.04381 -14.64916 -14.36976 -14.28217 -14.11664 -13.72411 -13.44531 -13.18403 -13.10847 -12.83808 -12.55400 -12.45778 -12.36223 -11.88616 -11.70669 -11.13526 -11.07297 -10.98259 -10.78700 -10.36641 -10.26319 -10.20039 -9.25150 -9.17299 -9.10839 -9.05883 -8.94847 -8.58727 -7.99043 -6.15369 -4.25147 0.49191 1.24636 2.44142 2.63637 3.24278 3.29295 3.29856 3.31273 3.91345 4.03915 4.18008 4.34293 4.52685 4.76597 4.82840 4.90671 4.95764 5.13358 5.17027 5.18932 5.25178 5.29810 5.38826 5.44291 5.58307 5.88303 6.01932 6.11539 6.18072 6.32340 6.67764 6.79441 6.92623 6.94853 7.10273 7.36788 7.50302 7.64989 7.83214 7.86580 8.10584 8.56488 8.71946 8.99900 9.42184 10.90608 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032238 B = 0.003012 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.341683 B = 9293.533681 C = 9776.622477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.698 5.698 13 C 0.537 3.463 14 O -0.547 6.547 15 C -0.092 4.092 16 C -0.076 4.076 17 C -0.111 4.111 18 C -0.126 4.126 19 C 0.560 3.440 20 O -0.534 6.534 21 N -0.619 5.619 22 C 0.085 3.915 23 C 0.063 3.937 24 C -0.067 4.067 25 C -0.097 4.097 26 H 0.092 0.908 27 H 0.015 0.985 28 H 0.027 0.973 29 H 0.266 0.734 30 H 0.389 0.611 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.137 0.863 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.641 -4.193 -20.055 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.346 5.346 13 C 0.322 3.678 14 O -0.427 6.427 15 C -0.095 4.095 16 C -0.095 4.095 17 C -0.130 4.130 18 C -0.130 4.130 19 C 0.350 3.650 20 O -0.412 6.412 21 N -0.352 5.352 22 C -0.058 4.058 23 C -0.079 4.079 24 C -0.086 4.086 25 C -0.116 4.116 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.223 0.777 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.259 -3.858 -19.966 21.592 hybrid contribution 0.408 -0.834 0.832 1.247 sum 7.667 -4.693 -19.134 21.140 Atomic orbital electron populations 1.22088 0.98251 0.99268 1.01037 1.18808 0.91165 0.94047 0.79720 0.93136 1.21164 1.32706 1.13343 0.90279 0.92061 1.24884 0.94744 0.94935 0.99069 1.69886 1.35652 1.22397 1.24080 0.86490 0.79182 0.79606 0.81721 1.20135 1.21098 1.20117 1.46538 1.64047 1.13632 1.10383 1.18270 0.79248 0.86863 0.83396 1.90728 1.51411 1.15533 1.85006 1.20603 0.99416 0.94198 0.95305 1.21271 0.96297 1.00991 0.90912 1.21878 0.98161 0.93283 0.99631 1.19908 1.04447 0.94534 0.94088 1.18490 0.77436 0.86483 0.82611 1.90767 1.56835 1.14208 1.79373 1.47597 1.59419 1.10756 1.17461 1.21679 0.99963 0.99195 0.84931 1.22454 1.01233 0.80300 1.03958 1.21133 0.96472 1.00137 0.90881 1.21404 0.97539 0.93714 0.98904 0.88995 0.96556 0.95360 0.92445 0.77724 0.83957 0.83700 0.92571 0.91064 0.90299 0.89002 0.91087 0.91810 0.84516 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.65 2.56 -69.08 -0.18 6.47 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -14.05 8.73 -34.44 -0.30 -14.35 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.62 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.70 -14.44 5.02 -55.82 -0.28 -14.72 16 13 C 0.54 10.74 7.74 -12.24 -0.09 10.64 16 14 O -0.55 -12.85 16.00 5.34 0.09 -12.76 16 15 C -0.09 -1.42 5.88 -104.90 -0.62 -2.03 16 16 C -0.08 -1.00 9.58 -39.25 -0.38 -1.38 16 17 C -0.11 -1.19 7.50 -39.24 -0.29 -1.48 16 18 C -0.13 -1.52 5.46 -104.90 -0.57 -2.09 16 19 C 0.56 6.90 7.48 -12.25 -0.09 6.81 16 20 O -0.53 -8.26 16.18 5.34 0.09 -8.18 16 21 N -0.62 -5.59 3.27 -190.57 -0.62 -6.21 16 22 C 0.08 0.60 10.52 59.85 0.63 1.23 16 23 C 0.06 0.37 8.75 59.85 0.52 0.90 16 24 C -0.07 -0.84 9.57 -39.24 -0.38 -1.21 16 25 C -0.10 -1.28 9.53 -39.24 -0.37 -1.65 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 6.90 6.56 -40.82 -0.27 6.64 16 31 H 0.14 1.85 7.64 -52.48 -0.40 1.45 16 32 H 0.15 1.11 4.57 -52.49 -0.24 0.87 16 33 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.07 0.32 7.95 -51.93 -0.41 -0.09 16 35 H 0.08 0.67 7.36 -51.93 -0.38 0.28 16 36 H 0.09 0.61 5.18 -51.93 -0.27 0.34 16 37 H 0.07 0.29 7.97 -51.93 -0.41 -0.12 16 38 H 0.06 0.29 7.12 -51.93 -0.37 -0.08 16 39 H 0.14 1.58 7.86 -52.48 -0.41 1.17 16 40 H 0.14 1.61 6.39 -52.49 -0.34 1.27 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -32.91 333.22 -7.00 -39.90 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.02 Total: 5.29 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.87 Total: 0.24 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.28 Total: -44.93 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.17 Total: -20.94 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.91 -7.00 -39.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170850836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.348 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds