Wall clock time and date at job start Tue Mar 31 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 C 1.50694 * 109.47438 * 120.00641 * 2 1 3 5 5 H 1.07995 * 120.00407 * 119.99344 * 4 2 1 6 6 C 1.37884 * 119.99678 * 299.99821 * 4 2 1 7 7 N 1.31512 * 120.00183 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99791 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47451 * 59.99872 * 8 6 4 10 10 H 1.48498 * 109.47471 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47106 * 300.00088 * 8 6 4 12 12 N 1.46503 * 109.46698 * 240.00959 * 2 1 3 13 13 C 1.34767 * 120.00421 * 85.00147 * 12 2 1 14 14 O 1.21530 * 120.00132 * 359.97438 * 13 12 2 15 15 C 1.48040 * 120.00180 * 179.97438 * 13 12 2 16 16 C 1.39555 * 120.00389 * 179.97438 * 15 13 12 17 17 C 1.37811 * 120.00402 * 180.30190 * 16 15 13 18 18 C 1.39566 * 119.99715 * 359.49241 * 17 16 15 19 19 C 1.48028 * 119.99741 * 180.23403 * 18 17 16 20 20 O 1.21532 * 119.99508 * 206.34150 * 19 18 17 21 21 N 1.34770 * 120.00176 * 26.34880 * 19 18 17 22 22 C 1.46509 * 119.99786 * 184.75208 * 21 19 18 23 23 C 1.46500 * 120.00347 * 4.75627 * 21 19 18 24 24 C 1.39553 * 119.99742 * 0.48638 * 18 17 16 25 25 C 1.37822 * 120.00211 * 359.76923 * 24 18 17 26 26 H 1.08998 * 109.47071 * 299.99442 * 1 2 3 27 27 H 1.09002 * 109.47174 * 59.99520 * 1 2 3 28 28 H 1.09000 * 109.47417 * 179.97438 * 1 2 3 29 29 H 0.96996 * 119.99970 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99614 * 264.99150 * 12 2 1 31 31 H 1.08003 * 119.99701 * 0.02562 * 16 15 13 32 32 H 1.07993 * 120.00491 * 179.72839 * 17 16 15 33 33 H 1.09009 * 109.46618 * 90.00481 * 22 21 19 34 34 H 1.08998 * 109.47087 * 209.99872 * 22 21 19 35 35 H 1.08996 * 109.47116 * 330.00198 * 22 21 19 36 36 H 1.09000 * 109.47010 * 24.30395 * 23 21 19 37 37 H 1.08996 * 109.47384 * 144.30378 * 23 21 19 38 38 H 1.09001 * 109.46880 * 264.30424 * 23 21 19 39 39 H 1.08003 * 119.99871 * 179.74360 * 24 18 17 40 40 H 1.07999 * 119.99981 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3215 -1.1206 4.0077 9 1 3.8065 -1.1213 4.0080 10 1 1.8262 -0.4210 5.2204 11 1 1.8259 -2.5205 4.0074 12 7 2.0182 -0.6904 -1.1963 13 6 2.1470 -0.0180 -2.3572 14 8 1.8576 1.1611 -2.4117 15 6 2.6409 -0.7156 -3.5659 16 6 2.7737 -0.0195 -4.7681 17 6 3.2275 -0.6704 -5.8948 18 6 3.5645 -2.0233 -5.8310 19 6 4.0569 -2.7211 -7.0400 20 8 3.9022 -3.9212 -7.1542 21 7 4.6768 -2.0258 -8.0139 22 6 5.0712 -2.6966 -9.2554 23 6 4.9565 -0.5994 -7.8313 24 6 3.4321 -2.7193 -4.6287 25 6 2.9732 -2.0696 -3.5032 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7082 1.1606 3.4845 30 1 2.2490 -1.6316 -1.1529 31 1 2.5165 1.0284 -4.8166 32 1 3.3261 -0.1328 -6.8262 33 1 4.2576 -2.6311 -9.9779 34 1 5.9590 -2.2134 -9.6632 35 1 5.2901 -3.7441 -9.0486 36 1 5.0067 -0.3725 -6.7664 37 1 5.9089 -0.3529 -8.3006 38 1 4.1620 -0.0117 -8.2911 39 1 3.6889 -3.7672 -4.5803 40 1 2.8703 -2.6084 -2.5729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170850836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:22 Heat of formation + Delta-G solvation = -49.720790 kcal Electronic energy + Delta-G solvation = -22293.013568 eV Core-core repulsion = 18879.587120 eV Total energy + Delta-G solvation = -3413.426448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69379 -40.74799 -38.90971 -36.80383 -36.76989 -34.47780 -32.94055 -32.11064 -30.73995 -28.82198 -27.66636 -27.34456 -25.22211 -23.72712 -22.85716 -21.43611 -20.84993 -19.54225 -18.38214 -17.93169 -17.41472 -17.19412 -16.78442 -16.51239 -15.94972 -15.75338 -15.42959 -15.32923 -14.74000 -14.63433 -14.43401 -14.26903 -13.85313 -13.69154 -13.61518 -13.30258 -13.18605 -13.01514 -12.86198 -12.74410 -12.66974 -12.28011 -12.16183 -11.98306 -11.18978 -11.13916 -10.88359 -10.60037 -10.19865 -10.05368 -9.80670 -9.69948 -8.18341 -6.36114 -0.58924 0.26867 1.38769 1.45731 1.47517 1.55318 1.91049 2.08727 2.30558 2.52581 2.81095 3.12269 3.33712 3.70902 3.78309 3.87102 4.14869 4.26979 4.29272 4.46527 4.49935 4.59068 4.71268 4.73576 4.88828 4.90723 4.92685 4.93228 5.05985 5.09376 5.14665 5.26805 5.41428 5.42710 5.55995 5.64350 5.70172 5.87561 6.07409 6.18755 6.70059 6.86414 6.96969 7.28409 7.44333 8.87907 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032238 B = 0.003012 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.341683 B = 9293.533681 C = 9776.622477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.074 0.926 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.697 5.697 13 C 0.537 3.463 14 O -0.590 6.590 15 C -0.113 4.113 16 C -0.077 4.077 17 C -0.090 4.090 18 C -0.123 4.123 19 C 0.554 3.446 20 O -0.575 6.575 21 N -0.612 5.612 22 C 0.080 3.920 23 C 0.052 3.948 24 C -0.071 4.071 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.013 0.987 28 H 0.040 0.960 29 H 0.266 0.734 30 H 0.404 0.596 31 H 0.142 0.858 32 H 0.181 0.819 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.018 -5.195 -21.718 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.345 5.345 13 C 0.324 3.676 14 O -0.473 6.473 15 C -0.117 4.117 16 C -0.096 4.096 17 C -0.108 4.108 18 C -0.126 4.126 19 C 0.343 3.657 20 O -0.456 6.456 21 N -0.344 5.344 22 C -0.062 4.062 23 C -0.089 4.089 24 C -0.090 4.090 25 C -0.109 4.109 26 H 0.088 0.912 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.241 0.759 31 H 0.160 0.840 32 H 0.198 0.802 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.163 0.837 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.667 -4.866 -21.674 23.845 hybrid contribution 0.042 -0.479 1.181 1.275 sum 8.709 -5.345 -20.494 22.900 Atomic orbital electron populations 1.21917 0.98140 0.99576 0.99769 1.18408 0.91236 0.92078 0.81563 0.97916 1.21505 1.32857 1.13717 0.90742 0.90788 1.25791 0.94805 0.95562 1.02290 1.70036 1.36779 1.23864 1.24761 0.85390 0.78674 0.78696 0.77539 1.19527 1.21142 1.18908 1.46270 1.64338 1.14286 1.09632 1.18920 0.77990 0.86441 0.84221 1.90694 1.53235 1.17547 1.85805 1.20259 1.02314 0.95107 0.93994 1.21361 0.96262 1.01085 0.90876 1.22139 0.96017 0.92656 0.99997 1.20106 1.03510 0.95000 0.94028 1.18548 0.77814 0.86121 0.83211 1.90751 1.58788 1.15806 1.80253 1.47761 1.57586 1.11962 1.17060 1.21859 1.01671 0.98477 0.84202 1.22712 1.03559 0.78491 1.04120 1.21247 0.96312 1.00597 0.90819 1.21430 0.97027 0.92733 0.99753 0.91224 0.96783 0.94073 0.92453 0.75928 0.84010 0.80166 0.91649 0.87915 0.92131 0.89651 0.88472 0.89575 0.83734 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 9.26 71.98 0.67 -6.22 16 2 C 0.27 14.04 2.56 44.24 0.11 14.16 16 3 H 0.00 0.18 7.58 -2.39 -0.02 0.16 16 4 C -0.55 -28.99 8.73 25.60 0.22 -28.77 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -52.27 11.32 21.45 0.24 -52.03 16 8 Si 0.97 41.70 29.54 68.60 2.03 43.72 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.70 -29.28 5.02 -448.81 -2.25 -31.53 16 13 C 0.54 21.91 7.74 86.85 0.67 22.59 16 14 O -0.59 -28.82 16.00 -3.81 -0.06 -28.88 16 15 C -0.11 -3.45 5.88 -20.04 -0.12 -3.57 16 16 C -0.08 -1.93 9.58 22.49 0.22 -1.72 16 17 C -0.09 -1.69 7.50 22.49 0.17 -1.52 16 18 C -0.12 -2.70 5.46 -20.04 -0.11 -2.81 16 19 C 0.55 12.55 7.48 86.84 0.65 13.20 16 20 O -0.58 -17.28 16.18 -3.82 -0.06 -17.34 16 21 N -0.61 -9.19 3.27 -875.13 -2.87 -12.05 16 22 C 0.08 0.90 10.52 127.77 1.34 2.24 16 23 C 0.05 0.40 8.75 127.77 1.12 1.52 16 24 C -0.07 -1.66 9.57 22.49 0.22 -1.44 16 25 C -0.09 -2.30 9.53 22.49 0.21 -2.09 16 26 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 27 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.40 14.26 6.56 -92.71 -0.61 13.65 16 31 H 0.14 3.58 7.64 -2.91 -0.02 3.56 16 32 H 0.18 2.03 4.57 -2.91 -0.01 2.02 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.10 0.51 7.95 -2.39 -0.02 0.50 16 35 H 0.06 0.94 7.36 -2.39 -0.02 0.92 16 36 H 0.09 0.82 5.18 -2.39 -0.01 0.80 16 37 H 0.10 0.33 7.97 -2.39 -0.02 0.31 16 38 H 0.09 0.35 7.12 -2.39 -0.02 0.34 16 39 H 0.14 3.16 7.86 -2.91 -0.02 3.13 16 40 H 0.15 3.30 6.39 -2.91 -0.02 3.28 16 Total: -1.00 -73.77 333.22 3.32 -70.45 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.47 Total: 20.77 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 5.82 Total: 6.88 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -4.88 Total: -95.61 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.12 Total: -46.22 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -73.77 3.32 -70.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170850836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.733 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds