Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09001 * 109.47772 * 2 1 4 4 C 1.50701 * 109.47465 * 239.99687 * 2 1 3 5 5 H 1.07999 * 120.00346 * 272.54507 * 4 2 1 6 6 C 1.37878 * 119.99882 * 92.53486 * 4 2 1 7 7 N 1.31519 * 119.99938 * 180.59608 * 6 4 2 8 8 Si 1.86795 * 120.00046 * 0.60289 * 6 4 2 9 9 H 1.48501 * 109.47239 * 89.83190 * 8 6 4 10 10 H 1.48497 * 109.47218 * 209.82992 * 8 6 4 11 11 H 1.48501 * 109.47381 * 329.82989 * 8 6 4 12 12 N 1.46504 * 109.47223 * 119.99690 * 2 1 3 13 13 C 1.46508 * 119.99436 * 59.99850 * 12 2 1 14 14 C 1.34775 * 120.00242 * 239.99738 * 12 2 1 15 15 O 1.21474 * 119.99840 * 4.24944 * 14 12 2 16 16 C 1.48454 * 119.99779 * 183.96834 * 14 12 2 17 17 C 1.38299 * 120.54206 * 281.45864 * 16 14 12 18 18 C 1.40957 * 119.01644 * 179.97438 * 17 16 14 19 19 O 1.22008 * 119.96377 * 180.02562 * 18 17 16 20 20 N 1.34596 * 120.07476 * 359.97438 * 18 17 16 21 21 H 0.96999 * 119.44390 * 180.02562 * 20 18 17 22 22 C 1.35705 * 121.11548 * 0.02562 * 20 18 17 23 23 C 1.50699 * 119.49659 * 180.02562 * 22 20 18 24 24 C 1.52997 * 117.50084 * 8.74419 * 23 22 20 25 25 C 1.53010 * 117.49935 * 300.08320 * 23 22 20 26 26 C 1.35264 * 121.00448 * 359.73114 * 22 20 18 27 27 H 1.09001 * 109.47412 * 294.65000 * 1 2 3 28 28 H 1.09007 * 109.46922 * 54.64374 * 1 2 3 29 29 H 1.08998 * 109.47654 * 174.64546 * 1 2 3 30 30 H 0.96996 * 120.00130 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.46971 * 270.26243 * 13 12 2 32 32 H 1.08994 * 109.47251 * 30.26561 * 13 12 2 33 33 H 1.09004 * 109.46444 * 150.26360 * 13 12 2 34 34 H 1.08004 * 120.48934 * 0.02562 * 17 16 14 35 35 H 1.09005 * 115.55136 * 154.42125 * 23 22 20 36 36 H 1.08997 * 117.50037 * 0.02562 * 24 23 22 37 37 H 1.09000 * 117.50067 * 145.02052 * 24 23 22 38 38 H 1.08989 * 117.49913 * 214.97961 * 25 23 22 39 39 H 1.09003 * 117.49248 * 0.02562 * 25 23 22 40 40 H 1.08000 * 120.06874 * 180.28106 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1732 -1.7811 -1.2161 6 6 2.3119 0.0064 -2.3745 7 7 2.7392 -0.6151 -3.4519 8 14 2.0841 1.8603 -2.3942 9 1 3.3450 2.5186 -1.9675 10 1 1.7358 2.3017 -3.7686 11 1 0.9903 2.2346 -1.4620 12 7 2.0183 -0.6906 1.1962 13 6 1.6642 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0232 1.1475 1.9316 16 6 3.3605 -0.7586 3.2492 17 6 2.5776 -1.0306 4.3564 18 6 3.1490 -1.7195 5.4453 19 8 2.4740 -1.9689 6.4306 20 7 4.4382 -2.1034 5.3990 21 1 4.8220 -2.5773 6.1533 22 6 5.2102 -1.8388 4.3147 23 6 6.6492 -2.2860 4.3015 24 6 7.1151 -3.2011 5.4357 25 6 7.5690 -1.7397 5.3955 26 6 4.7061 -1.1849 3.2433 27 1 -0.3634 0.4286 0.9340 28 1 -0.3633 0.5947 -0.8382 29 1 -0.3634 -1.0231 -0.0959 30 1 2.9363 -0.1108 -4.2567 31 1 0.7349 -2.1443 1.9953 32 1 1.5339 -2.5980 0.4709 33 1 2.4606 -2.5806 1.9905 34 1 1.5434 -0.7204 4.3858 35 1 7.0823 -2.4476 3.3143 36 1 6.3807 -3.4800 6.1912 37 1 7.8548 -3.9646 5.1948 38 1 8.6070 -1.5424 5.1281 39 1 7.1330 -1.0571 6.1249 40 1 5.3328 -0.9861 2.3865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184406634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -32.850556 kcal Electronic energy + Delta-G solvation = -23120.336474 eV Core-core repulsion = 19707.641574 eV Total energy + Delta-G solvation = -3412.694900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.60005 -40.83774 -39.09155 -37.36152 -36.99654 -35.01004 -34.35862 -32.11208 -31.12380 -27.86696 -27.29315 -26.71129 -25.02660 -23.40751 -23.05167 -22.16429 -20.21871 -19.71532 -19.27486 -18.35859 -18.02407 -17.65168 -17.07291 -16.65812 -16.33522 -16.06662 -15.76879 -15.41681 -15.04074 -14.57812 -14.31208 -14.12422 -14.00294 -13.64119 -13.50346 -13.38547 -13.13170 -13.00737 -12.92778 -12.60539 -12.47121 -12.31628 -11.83232 -11.73720 -11.51244 -11.48653 -11.41351 -11.28780 -10.82497 -10.79287 -9.50303 -9.09656 -8.36156 -6.41046 -0.55884 0.55750 1.29085 1.35488 1.43328 1.43656 1.70872 2.02994 2.28835 2.34401 2.86561 3.02096 3.17230 3.30667 3.66844 3.78025 3.93812 3.98282 4.08481 4.19535 4.31425 4.43495 4.60624 4.68129 4.71369 4.72029 4.77213 4.90717 4.92457 5.00303 5.06793 5.10534 5.10982 5.17124 5.30193 5.50954 5.51569 5.69425 5.74789 6.10868 6.55793 6.64352 6.80055 7.04922 7.27300 8.78664 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.004427 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.262496 B = 6323.169871 C = 6960.227708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.222 3.778 3 H 0.042 0.958 4 C -0.521 4.521 5 H 0.058 0.942 6 C 0.033 3.967 7 N -0.931 5.931 8 Si 0.920 3.080 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.248 1.248 12 N -0.580 5.580 13 C 0.081 3.919 14 C 0.541 3.459 15 O -0.584 6.584 16 C 0.012 3.988 17 C -0.233 4.233 18 C 0.526 3.474 19 O -0.588 6.588 20 N -0.586 5.586 21 H 0.425 0.575 22 C 0.226 3.774 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.214 4.214 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.269 0.731 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -6.449 17.212 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.121 3.879 3 H 0.060 0.940 4 C -0.559 4.559 5 H 0.076 0.924 6 C -0.167 4.167 7 N -0.571 5.571 8 Si 0.745 3.255 9 H -0.208 1.208 10 H -0.202 1.202 11 H -0.171 1.171 12 N -0.309 5.309 13 C -0.061 4.061 14 C 0.328 3.672 15 O -0.465 6.465 16 C 0.005 3.995 17 C -0.255 4.255 18 C 0.328 3.672 19 O -0.474 6.474 20 N -0.219 5.219 21 H 0.267 0.733 22 C 0.116 3.884 23 C -0.168 4.168 24 C -0.198 4.198 25 C -0.191 4.191 26 C -0.237 4.237 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.505 -5.914 17.393 20.244 hybrid contribution -0.078 0.825 -0.530 0.984 sum 8.427 -5.089 16.863 19.527 Atomic orbital electron populations 1.22124 0.95705 1.02092 1.00158 1.19191 0.92756 0.93520 0.82470 0.94003 1.21295 1.44129 0.95350 0.95128 0.92402 1.25560 0.93876 1.01966 0.95269 1.69975 1.46089 1.37763 1.03228 0.86166 0.79701 0.81751 0.77901 1.20816 1.20168 1.17124 1.48245 1.47761 1.13387 1.21516 1.21856 1.01191 0.80385 1.02699 1.18932 0.78856 0.86501 0.82913 1.90727 1.62255 1.16928 1.76627 1.20333 0.94951 0.91276 0.92942 1.22345 1.02147 1.07375 0.93680 1.16794 0.81136 0.81059 0.88168 1.90969 1.60458 1.60575 1.35366 1.43404 1.11140 1.48915 1.18484 0.73314 1.19722 0.92400 0.91248 0.85044 1.21468 0.87521 1.08193 0.99590 1.23262 1.03804 0.94417 0.98269 1.23262 1.00400 0.96964 0.98521 1.20305 0.94226 1.07800 1.01382 0.93530 0.92808 0.91698 0.92185 0.90903 0.90766 0.90506 0.83280 0.82991 0.88051 0.85219 0.85601 0.88536 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 8.94 71.98 0.64 -5.09 16 2 C 0.22 10.44 2.18 44.24 0.10 10.54 16 3 H 0.04 2.17 4.31 -2.39 -0.01 2.16 16 4 C -0.52 -28.01 8.73 25.60 0.22 -27.78 16 5 H 0.06 3.31 6.82 -2.91 -0.02 3.29 16 6 C 0.03 1.87 5.47 84.65 0.46 2.33 16 7 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 8 Si 0.92 44.59 26.57 68.60 1.82 46.41 16 9 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.25 -11.37 6.15 99.48 0.61 -10.76 16 12 N -0.58 -23.56 2.75 -829.52 -2.28 -25.84 16 13 C 0.08 2.59 9.28 127.77 1.19 3.78 16 14 C 0.54 21.99 7.15 86.97 0.62 22.61 16 15 O -0.58 -28.45 16.44 -3.63 -0.06 -28.51 16 16 C 0.01 0.38 3.85 -19.82 -0.08 0.30 16 17 C -0.23 -6.91 9.55 22.95 0.22 -6.69 16 18 C 0.53 14.64 7.70 84.94 0.65 15.30 16 19 O -0.59 -20.03 17.93 -5.34 -0.10 -20.13 16 20 N -0.59 -11.34 5.18 -307.51 -1.59 -12.93 16 21 H 0.42 5.86 6.60 -92.71 -0.61 5.25 16 22 C 0.23 4.14 6.46 41.27 0.27 4.41 16 23 C -0.15 -1.62 6.00 -11.54 -0.07 -1.69 16 24 C -0.16 -0.99 9.94 30.62 0.30 -0.69 16 25 C -0.15 -1.19 10.24 30.62 0.31 -0.88 16 26 C -0.21 -5.41 9.42 22.30 0.21 -5.20 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 2.19 7.13 -2.38 -0.02 2.17 16 29 H 0.06 2.42 7.85 -2.39 -0.02 2.40 16 30 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.57 6.57 -2.39 -0.02 2.55 16 33 H 0.08 2.14 6.78 -2.39 -0.02 2.13 16 34 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.15 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.10 0.52 6.37 -2.39 -0.02 0.50 16 37 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -74.76 333.79 3.51 -71.25 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.37 Total: 13.64 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.06 Total: 11.26 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -3.58 Total: -93.92 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -0.16 Total: -48.63 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.82 Total: 46.41 kcal Total: -74.76 3.51 -71.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184406634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.400 kcal (2) G-P(sol) polarization free energy of solvation -74.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds