Wall clock time and date at job start Tue Mar 31 2020 06:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46724 * 2 1 4 4 C 1.50697 * 109.47056 * 119.99684 * 2 1 3 5 5 H 1.08005 * 119.99607 * 120.00113 * 4 2 1 6 6 C 1.37875 * 120.00415 * 300.00076 * 4 2 1 7 7 N 1.31512 * 120.00046 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00125 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47006 * 60.00144 * 8 6 4 10 10 H 1.48492 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47030 * 300.00190 * 8 6 4 12 12 N 1.46493 * 109.47306 * 240.00245 * 2 1 3 13 13 C 1.46503 * 119.99985 * 300.00093 * 12 2 1 14 14 C 1.34771 * 120.00298 * 119.99671 * 12 2 1 15 15 O 1.21283 * 120.00050 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00289 * 180.02562 * 14 12 2 17 17 C 1.50695 * 109.47244 * 180.02562 * 16 14 12 18 18 C 1.37980 * 120.07356 * 100.15238 * 17 16 14 19 19 C 1.38342 * 120.14191 * 180.27679 * 18 17 16 20 20 C 1.38377 * 120.29411 * 359.48595 * 19 18 17 21 21 C 1.37938 * 120.14420 * 0.51255 * 20 19 18 22 22 C 1.39556 * 120.07381 * 280.16914 * 17 16 14 23 23 C 1.47843 * 120.14343 * 359.95663 * 22 17 16 24 24 N 1.34781 * 119.99984 * 185.75472 * 23 22 17 25 25 O 1.21552 * 120.00261 * 5.76077 * 23 22 17 26 26 H 1.09004 * 109.47083 * 300.00126 * 1 2 3 27 27 H 1.08998 * 109.46983 * 60.00083 * 1 2 3 28 28 H 1.08997 * 109.47004 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00473 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47048 * 269.99942 * 13 12 2 31 31 H 1.09001 * 109.47123 * 29.99456 * 13 12 2 32 32 H 1.08996 * 109.47609 * 150.00258 * 13 12 2 33 33 H 1.08995 * 109.47367 * 60.00210 * 16 14 12 34 34 H 1.09010 * 109.47119 * 300.00074 * 16 14 12 35 35 H 1.08001 * 119.93167 * 359.97438 * 18 17 16 36 36 H 1.08000 * 119.85342 * 179.71906 * 19 18 17 37 37 H 1.07999 * 119.92963 * 180.27968 * 20 19 18 38 38 H 1.08004 * 120.07101 * 179.77464 * 21 20 19 39 39 H 0.96995 * 120.00048 * 0.02562 * 24 23 22 40 40 H 0.97004 * 119.99608 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.8064 -1.1208 4.0082 10 1 1.8260 -0.4206 5.2204 11 1 1.8259 -2.5202 4.0077 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0865 1.1255 -1.8912 16 6 3.2951 -0.7457 -3.3141 17 6 4.1329 0.2013 -4.1340 18 6 5.5097 0.1437 -4.0645 19 6 6.2801 1.0162 -4.8122 20 6 5.6766 1.9446 -5.6421 21 6 4.3012 2.0126 -5.7208 22 6 3.5178 1.1387 -4.9650 23 6 2.0431 1.2056 -5.0448 24 7 1.4530 2.0305 -5.9325 25 8 1.3627 0.5168 -4.3099 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7082 1.1609 3.4844 30 1 2.4158 -2.7376 -0.9717 31 1 0.6905 -2.3002 -0.9846 32 1 1.6239 -2.2852 -2.5002 33 1 2.4472 -1.0879 -3.9073 34 1 3.9006 -1.6024 -3.0177 35 1 5.9870 -0.5808 -3.4212 36 1 7.3574 0.9701 -4.7508 37 1 6.2838 2.6199 -6.2266 38 1 3.8314 2.7401 -6.3662 39 1 1.9959 2.5800 -6.5192 40 1 0.4854 2.0747 -5.9846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190964604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:57 Heat of formation + Delta-G solvation = -40.947902 kcal Electronic energy + Delta-G solvation = -23562.020651 eV Core-core repulsion = 20148.974624 eV Total energy + Delta-G solvation = -3413.046027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39286 -38.56867 -37.98333 -35.12655 -33.95140 -32.82702 -32.28271 -30.88144 -29.48202 -27.21211 -25.84627 -25.07333 -23.93448 -22.20804 -20.93255 -20.33618 -18.27691 -17.72867 -16.78985 -16.45568 -16.11035 -15.70604 -15.19268 -15.02859 -14.97586 -14.49040 -14.14851 -14.00150 -13.41155 -13.04814 -12.80234 -12.44118 -12.34961 -12.17780 -11.75116 -11.56686 -11.41618 -11.25417 -11.05257 -10.95251 -10.71658 -10.51430 -10.13782 -10.03964 -9.70857 -9.56827 -9.06289 -8.97470 -8.89731 -8.51444 -8.29868 -7.34276 -5.96124 -4.03761 0.90906 1.35672 2.97312 3.34081 3.38474 3.40525 3.53106 3.74195 3.84380 4.29414 4.51565 4.73107 4.79731 4.81909 5.00635 5.32090 5.33895 5.44421 5.55426 5.62201 5.80561 5.89318 5.91197 6.11335 6.22460 6.27489 6.40024 6.46481 6.57523 6.81173 6.87089 6.94331 7.02445 7.24224 7.35009 7.64934 7.69256 7.86242 8.17092 8.34212 8.34793 8.77233 8.96912 9.32923 9.62993 11.08987 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.004538 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.410204 B = 6168.570243 C = 6714.885730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.261 3.739 3 H 0.061 0.939 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.089 3.911 14 C 0.531 3.469 15 O -0.557 6.557 16 C -0.112 4.112 17 C 0.008 3.992 18 C -0.120 4.120 19 C -0.092 4.092 20 C -0.136 4.136 21 C -0.087 4.087 22 C -0.126 4.126 23 C 0.561 3.439 24 N -0.856 5.856 25 O -0.519 6.519 26 H 0.091 0.909 27 H 0.012 0.988 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.397 0.603 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -0.873 -19.620 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.078 0.922 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.324 5.324 13 C -0.055 4.055 14 C 0.318 3.682 15 O -0.436 6.436 16 C -0.152 4.152 17 C 0.007 3.993 18 C -0.138 4.138 19 C -0.110 4.110 20 C -0.154 4.154 21 C -0.106 4.106 22 C -0.129 4.129 23 C 0.348 3.652 24 N -0.420 5.420 25 O -0.396 6.396 26 H 0.109 0.891 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.226 0.774 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.787 -0.667 -18.781 19.664 hybrid contribution 0.160 -0.162 0.590 0.633 sum 5.947 -0.829 -18.191 19.156 Atomic orbital electron populations 1.22063 0.98439 0.99185 1.00670 1.18847 0.90762 0.94394 0.79952 0.92167 1.21329 1.31536 1.12797 0.90434 0.92443 1.24897 0.95076 0.95022 0.98878 1.69885 1.36523 1.22735 1.23632 0.86572 0.79166 0.79580 0.82123 1.20333 1.21245 1.20286 1.48052 1.49193 1.11547 1.23570 1.21509 1.01238 0.83371 0.99353 1.19767 0.78590 0.86779 0.83091 1.90614 1.59012 1.17091 1.76869 1.20968 1.00520 0.97443 0.96278 1.19539 0.93515 0.93862 0.92414 1.21065 0.92755 1.00279 0.99670 1.21284 0.99988 0.94541 0.95203 1.21001 0.94369 0.99645 1.00401 1.21170 0.94156 0.97370 0.97921 1.19650 0.92619 0.99558 1.01075 1.18291 0.87986 0.79483 0.79478 1.43731 1.11251 1.45983 1.41050 1.90833 1.65372 1.42390 1.40977 0.89079 0.96896 0.95284 0.92784 0.93707 0.91141 0.92939 0.86400 0.89459 0.85326 0.85651 0.85676 0.85933 0.77419 0.76608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 8.95 37.16 0.33 -3.46 16 2 C 0.26 7.21 2.64 -69.08 -0.18 7.02 16 3 H 0.06 1.93 6.90 -51.93 -0.36 1.57 16 4 C -0.52 -14.88 8.37 -34.44 -0.29 -15.17 16 5 H 0.06 1.60 7.65 -52.48 -0.40 1.20 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -26.28 11.32 55.43 0.63 -25.65 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 N -0.59 -14.01 2.75 -175.26 -0.48 -14.49 16 13 C 0.09 1.69 9.48 59.85 0.57 2.26 16 14 C 0.53 12.21 6.15 -10.99 -0.07 12.14 16 15 O -0.56 -14.95 15.28 5.56 0.08 -14.87 16 16 C -0.11 -1.95 3.67 -29.04 -0.11 -2.06 16 17 C 0.01 0.13 4.46 -104.23 -0.46 -0.33 16 18 C -0.12 -1.62 9.66 -39.64 -0.38 -2.00 16 19 C -0.09 -1.02 10.04 -39.49 -0.40 -1.42 16 20 C -0.14 -1.40 10.03 -39.64 -0.40 -1.80 16 21 C -0.09 -0.98 9.53 -39.19 -0.37 -1.36 16 22 C -0.13 -1.86 5.76 -104.97 -0.60 -2.47 16 23 C 0.56 8.68 7.97 -12.33 -0.10 8.59 16 24 N -0.86 -8.84 8.82 30.53 0.27 -8.57 16 25 O -0.52 -10.11 13.09 5.32 0.07 -10.04 16 26 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.35 6.43 -51.93 -0.33 1.01 16 32 H 0.05 0.83 6.44 -51.93 -0.33 0.50 16 33 H 0.12 2.00 5.37 -51.93 -0.28 1.72 16 34 H 0.09 1.28 7.97 -51.92 -0.41 0.86 16 35 H 0.13 1.54 8.03 -52.49 -0.42 1.12 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.93 6.45 -52.48 -0.34 0.60 16 39 H 0.40 2.74 6.90 -40.82 -0.28 2.46 16 40 H 0.40 3.69 8.93 -40.82 -0.36 3.32 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -36.82 328.64 -7.07 -43.88 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.01 Total: 6.37 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.56 Total: 1.65 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.41 Total: -48.71 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.15 Total: -24.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.82 -7.07 -43.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190964604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.937 kcal (2) G-P(sol) polarization free energy of solvation -36.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds