Wall clock time and date at job start Tue Mar 31 2020 06:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46724 * 2 1 4 4 C 1.50697 * 109.47056 * 119.99684 * 2 1 3 5 5 H 1.08005 * 119.99607 * 120.00113 * 4 2 1 6 6 C 1.37875 * 120.00415 * 300.00076 * 4 2 1 7 7 N 1.31512 * 120.00046 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00125 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47006 * 60.00144 * 8 6 4 10 10 H 1.48492 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47030 * 300.00190 * 8 6 4 12 12 N 1.46493 * 109.47306 * 240.00245 * 2 1 3 13 13 C 1.46503 * 119.99985 * 300.00093 * 12 2 1 14 14 C 1.34771 * 120.00298 * 119.99671 * 12 2 1 15 15 O 1.21283 * 120.00050 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00289 * 180.02562 * 14 12 2 17 17 C 1.50695 * 109.47244 * 180.02562 * 16 14 12 18 18 C 1.37980 * 120.07356 * 100.15238 * 17 16 14 19 19 C 1.38342 * 120.14191 * 180.27679 * 18 17 16 20 20 C 1.38377 * 120.29411 * 359.48595 * 19 18 17 21 21 C 1.37938 * 120.14420 * 0.51255 * 20 19 18 22 22 C 1.39556 * 120.07381 * 280.16914 * 17 16 14 23 23 C 1.47843 * 120.14343 * 359.95663 * 22 17 16 24 24 N 1.34781 * 119.99984 * 185.75472 * 23 22 17 25 25 O 1.21552 * 120.00261 * 5.76077 * 23 22 17 26 26 H 1.09004 * 109.47083 * 300.00126 * 1 2 3 27 27 H 1.08998 * 109.46983 * 60.00083 * 1 2 3 28 28 H 1.08997 * 109.47004 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00473 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47048 * 269.99942 * 13 12 2 31 31 H 1.09001 * 109.47123 * 29.99456 * 13 12 2 32 32 H 1.08996 * 109.47609 * 150.00258 * 13 12 2 33 33 H 1.08995 * 109.47367 * 60.00210 * 16 14 12 34 34 H 1.09010 * 109.47119 * 300.00074 * 16 14 12 35 35 H 1.08001 * 119.93167 * 359.97438 * 18 17 16 36 36 H 1.08000 * 119.85342 * 179.71906 * 19 18 17 37 37 H 1.07999 * 119.92963 * 180.27968 * 20 19 18 38 38 H 1.08004 * 120.07101 * 179.77464 * 21 20 19 39 39 H 0.96995 * 120.00048 * 0.02562 * 24 23 22 40 40 H 0.97004 * 119.99608 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.8064 -1.1208 4.0082 10 1 1.8260 -0.4206 5.2204 11 1 1.8259 -2.5202 4.0077 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0865 1.1255 -1.8912 16 6 3.2951 -0.7457 -3.3141 17 6 4.1329 0.2013 -4.1340 18 6 5.5097 0.1437 -4.0645 19 6 6.2801 1.0162 -4.8122 20 6 5.6766 1.9446 -5.6421 21 6 4.3012 2.0126 -5.7208 22 6 3.5178 1.1387 -4.9650 23 6 2.0431 1.2056 -5.0448 24 7 1.4530 2.0305 -5.9325 25 8 1.3627 0.5168 -4.3099 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7082 1.1609 3.4844 30 1 2.4158 -2.7376 -0.9717 31 1 0.6905 -2.3002 -0.9846 32 1 1.6239 -2.2852 -2.5002 33 1 2.4472 -1.0879 -3.9073 34 1 3.9006 -1.6024 -3.0177 35 1 5.9870 -0.5808 -3.4212 36 1 7.3574 0.9701 -4.7508 37 1 6.2838 2.6199 -6.2266 38 1 3.8314 2.7401 -6.3662 39 1 1.9959 2.5800 -6.5192 40 1 0.4854 2.0747 -5.9846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190964604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:57 Heat of formation + Delta-G solvation = -68.191821 kcal Electronic energy + Delta-G solvation = -23563.202036 eV Core-core repulsion = 20148.974624 eV Total energy + Delta-G solvation = -3414.227412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56263 -40.22431 -39.04392 -37.06010 -35.08732 -34.75605 -33.56180 -31.79787 -31.41803 -28.52998 -27.54705 -27.25550 -24.95065 -23.54764 -22.41245 -21.52204 -19.93145 -18.83804 -18.49750 -17.89701 -17.76883 -17.09808 -16.70432 -16.38856 -16.06532 -15.95997 -15.71542 -15.33466 -14.71245 -14.48537 -14.32862 -13.97698 -13.89652 -13.48795 -13.31839 -13.11019 -12.91959 -12.87241 -12.68550 -12.61773 -12.58320 -12.18064 -12.11310 -11.99424 -11.19481 -10.84654 -10.66782 -10.64114 -10.46458 -9.87606 -9.66504 -9.24334 -8.13276 -6.30976 -0.07188 0.41837 1.40637 1.44060 1.51629 1.87386 2.05552 2.35944 2.56280 2.58083 2.98013 3.13379 3.72831 3.84261 3.95553 4.04138 4.16256 4.37287 4.45374 4.55467 4.59511 4.64941 4.71990 4.78852 4.86790 4.92849 5.00012 5.06767 5.08043 5.34091 5.45507 5.51556 5.56664 5.61843 5.70646 5.89466 5.99539 6.06142 6.17198 6.45361 6.77137 6.93295 7.33932 7.35061 7.59433 8.91189 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.004538 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.410204 B = 6168.570243 C = 6714.885730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.266 3.734 3 H 0.002 0.998 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.970 3.030 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.262 1.262 12 N -0.604 5.604 13 C 0.087 3.913 14 C 0.522 3.478 15 O -0.606 6.606 16 C -0.096 4.096 17 C -0.029 4.029 18 C -0.136 4.136 19 C -0.091 4.091 20 C -0.130 4.130 21 C -0.085 4.085 22 C -0.152 4.152 23 C 0.550 3.450 24 N -0.832 5.832 25 O -0.573 6.573 26 H 0.068 0.932 27 H 0.009 0.991 28 H 0.046 0.954 29 H 0.264 0.736 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.415 0.585 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.813 -1.561 -21.141 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.164 3.836 3 H 0.020 0.980 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.794 3.206 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.186 1.186 12 N -0.335 5.335 13 C -0.055 4.055 14 C 0.312 3.688 15 O -0.488 6.488 16 C -0.135 4.135 17 C -0.030 4.030 18 C -0.154 4.154 19 C -0.108 4.108 20 C -0.147 4.147 21 C -0.104 4.104 22 C -0.155 4.155 23 C 0.338 3.662 24 N -0.397 5.397 25 O -0.453 6.453 26 H 0.087 0.913 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.176 0.824 39 H 0.248 0.752 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.563 -1.359 -20.374 21.775 hybrid contribution -0.350 0.170 0.950 1.027 sum 7.213 -1.189 -19.424 20.754 Atomic orbital electron populations 1.21847 0.97724 0.99798 0.99349 1.18436 0.91253 0.91978 0.81978 0.97990 1.21555 1.31951 1.13036 0.91104 0.92072 1.25816 0.95042 0.95667 1.02187 1.70039 1.37374 1.24067 1.24463 0.85438 0.78436 0.78921 0.77772 1.20073 1.20769 1.18622 1.48109 1.49447 1.13287 1.22622 1.21725 1.01335 0.80822 1.01647 1.20764 0.77538 0.86446 0.84088 1.90560 1.60707 1.19457 1.78117 1.20815 1.01128 0.98003 0.93568 1.19641 0.94501 0.95087 0.93803 1.21293 0.92121 1.01417 1.00552 1.21723 1.01521 0.93520 0.94081 1.21526 0.94297 0.99276 0.99614 1.21607 0.94728 0.96784 0.97248 1.19841 0.92510 1.00774 1.02425 1.18655 0.88571 0.79504 0.79508 1.43518 1.11880 1.44581 1.39724 1.90789 1.66422 1.44846 1.43283 0.91293 0.97180 0.93523 0.92649 0.92229 0.91546 0.89785 0.86235 0.87077 0.84640 0.82527 0.81732 0.82400 0.75229 0.75842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 8.95 71.98 0.64 -6.34 16 2 C 0.27 15.34 2.64 44.25 0.12 15.46 16 3 H 0.00 0.15 6.90 -2.39 -0.02 0.13 16 4 C -0.54 -31.29 8.37 25.60 0.21 -31.07 16 5 H 0.06 3.42 7.65 -2.91 -0.02 3.40 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -55.91 11.32 21.45 0.24 -55.67 16 8 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 12 N -0.60 -29.40 2.75 -826.80 -2.28 -31.68 16 13 C 0.09 3.26 9.48 127.77 1.21 4.48 16 14 C 0.52 24.89 6.15 87.66 0.54 25.43 16 15 O -0.61 -34.35 15.28 -3.04 -0.05 -34.39 16 16 C -0.10 -3.36 3.67 29.10 0.11 -3.26 16 17 C -0.03 -0.92 4.46 -19.61 -0.09 -1.01 16 18 C -0.14 -3.53 9.66 22.23 0.21 -3.31 16 19 C -0.09 -1.75 10.04 22.33 0.22 -1.53 16 20 C -0.13 -2.18 10.03 22.23 0.22 -1.96 16 21 C -0.09 -1.69 9.53 22.53 0.21 -1.47 16 22 C -0.15 -4.42 5.76 -20.09 -0.12 -4.54 16 23 C 0.55 17.14 7.97 86.78 0.69 17.83 16 24 N -0.83 -16.35 8.82 -175.60 -1.55 -17.90 16 25 O -0.57 -23.09 13.09 -3.88 -0.05 -23.14 16 26 H 0.07 4.04 6.07 -2.38 -0.01 4.02 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 2.30 6.66 -2.39 -0.02 2.28 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 2.51 6.43 -2.39 -0.02 2.49 16 32 H 0.08 2.59 6.44 -2.39 -0.02 2.57 16 33 H 0.12 4.12 5.37 -2.39 -0.01 4.11 16 34 H 0.11 3.20 7.97 -2.38 -0.02 3.18 16 35 H 0.14 3.13 8.03 -2.91 -0.02 3.11 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.16 1.80 6.45 -2.91 -0.02 1.78 16 39 H 0.42 4.79 6.90 -92.71 -0.64 4.15 16 40 H 0.41 7.21 8.93 -92.71 -0.83 6.38 16 Total: -1.00 -85.39 328.64 2.62 -82.77 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -0.38 Total: 23.33 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 4.65 Total: 9.85 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.58 Total: -105.25 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -0.10 Total: -57.54 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -85.39 2.62 -82.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190964604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.577 kcal (2) G-P(sol) polarization free energy of solvation -85.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds