Wall clock time and date at job start Tue Mar 31 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.47014 * 2 1 4 4 O 1.21280 * 120.00149 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99510 * 180.02562 * 3 2 1 6 6 C 1.39958 * 119.99381 * 185.27272 * 5 3 2 7 7 C 1.38997 * 119.99742 * 213.32423 * 6 5 3 8 8 C 1.38210 * 120.21930 * 180.02562 * 7 6 5 9 9 C 1.38026 * 120.22548 * 359.67660 * 8 7 6 10 10 C 1.39572 * 119.99433 * 0.62505 * 9 8 7 11 11 C 1.47860 * 120.11483 * 179.67049 * 10 9 8 12 12 O 1.21552 * 120.00402 * 179.72457 * 11 10 9 13 13 N 1.34776 * 119.99707 * 359.45460 * 11 10 9 14 14 C 1.46504 * 120.00166 * 180.27210 * 13 11 10 15 15 H 1.08994 * 109.46715 * 324.99733 * 14 13 11 16 16 C 1.53002 * 109.46842 * 84.99949 * 14 13 11 17 17 C 1.50700 * 109.46804 * 204.99747 * 14 13 11 18 18 H 1.07996 * 120.00841 * 0.02562 * 17 14 13 19 19 C 1.37885 * 119.99286 * 180.02562 * 17 14 13 20 20 N 1.31508 * 120.00219 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99522 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46991 * 90.00038 * 21 19 17 23 23 H 1.48505 * 109.46955 * 209.99969 * 21 19 17 24 24 H 1.48495 * 109.47102 * 329.99710 * 21 19 17 25 25 C 1.38600 * 120.00242 * 33.35309 * 6 5 3 26 26 H 1.08997 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46628 * 299.99800 * 1 2 3 28 28 H 1.08999 * 109.46862 * 59.99713 * 1 2 3 29 29 H 1.09003 * 109.47043 * 240.00418 * 2 1 3 30 30 H 1.08998 * 109.47385 * 120.00266 * 2 1 3 31 31 H 0.96996 * 120.00227 * 5.27372 * 5 3 2 32 32 H 1.07997 * 119.88981 * 0.02562 * 7 6 5 33 33 H 1.08004 * 119.88599 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.00195 * 180.31654 * 9 8 7 35 35 H 0.97007 * 120.00015 * 0.26664 * 13 11 10 36 36 H 1.09003 * 109.47330 * 59.99819 * 16 14 13 37 37 H 1.08998 * 109.46621 * 180.02562 * 16 14 13 38 38 H 1.09002 * 109.47218 * 299.99729 * 16 14 13 39 39 H 0.97000 * 119.99992 * 180.02562 * 20 19 17 40 40 H 1.08002 * 120.10394 * 0.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8249 2.9815 0.1109 7 6 4.9936 3.3609 -0.5390 8 6 5.4596 4.6576 -0.4317 9 6 4.7642 5.5863 0.3160 10 6 3.5931 5.2137 0.9776 11 6 2.8499 6.2045 1.7852 12 8 1.8275 5.8791 2.3564 13 7 3.3092 7.4671 1.8924 14 6 2.5761 8.4473 2.6975 15 1 1.5058 8.2595 2.6126 16 6 3.0010 8.3243 4.1622 17 6 2.8835 9.8363 2.2002 18 1 3.5571 9.9751 1.3676 19 6 2.3046 10.9300 2.8084 20 7 1.4840 10.7610 3.8221 21 14 2.6850 12.6517 2.1916 22 1 1.7052 13.0290 1.1415 23 1 2.5959 13.6128 3.3202 24 1 4.0564 12.6820 1.6229 25 6 3.1229 3.9048 0.8696 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9871 0.9333 -0.0781 32 1 5.5392 2.6401 -1.1297 33 1 6.3686 4.9465 -0.9386 34 1 5.1290 6.6000 0.3932 35 1 4.1251 7.7268 1.4366 36 1 4.0714 8.5120 4.2470 37 1 2.4553 9.0533 4.7612 38 1 2.7787 7.3196 4.5219 39 1 1.0765 11.5304 4.2497 40 1 2.2151 3.6116 1.3760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194639108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:37 Heat of formation + Delta-G solvation = -53.899221 kcal Electronic energy + Delta-G solvation = -22365.827129 eV Core-core repulsion = 18952.219490 eV Total energy + Delta-G solvation = -3413.607639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70387 -39.26620 -37.81319 -34.89550 -34.76403 -33.12657 -32.38090 -31.04602 -29.80875 -28.50168 -25.23141 -25.03138 -23.89538 -22.36741 -21.04869 -20.36191 -19.48198 -18.29112 -17.39654 -16.43825 -16.25428 -15.95003 -15.47754 -15.22907 -14.69458 -14.31720 -14.18581 -13.99008 -13.70953 -13.43674 -13.04181 -12.64554 -12.54005 -12.35788 -12.03070 -11.83778 -11.68177 -11.48671 -11.41110 -11.05454 -10.95379 -10.71851 -10.49398 -10.27696 -10.20114 -9.94505 -9.08900 -9.01348 -8.85573 -8.51680 -8.21718 -7.85856 -6.08979 -4.18252 0.99249 1.34822 2.41894 2.81726 3.27305 3.33406 3.35037 3.37313 4.06421 4.22529 4.37534 4.43551 4.73464 4.77920 4.86357 4.93753 5.18131 5.22938 5.24419 5.33466 5.49580 5.52753 5.60153 5.66838 5.92618 6.00671 6.20800 6.28801 6.40942 6.53943 6.87031 6.96138 7.01389 7.16585 7.19018 7.49443 7.60461 7.73249 7.94624 7.95928 8.18274 8.69394 8.81481 9.15184 9.49058 10.97152 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.003342 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.138394 B = 8377.252800 C = 9076.620421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.503 3.497 4 O -0.507 6.507 5 N -0.677 5.677 6 C 0.132 3.868 7 C -0.132 4.132 8 C -0.108 4.108 9 C -0.103 4.103 10 C -0.100 4.100 11 C 0.540 3.460 12 O -0.546 6.546 13 N -0.701 5.701 14 C 0.264 3.736 15 H 0.050 0.950 16 C -0.147 4.147 17 C -0.534 4.534 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.067 4.067 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.409 0.591 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.388 0.612 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.300 -20.928 -9.111 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.291 3.709 4 O -0.380 6.380 5 N -0.323 5.323 6 C 0.038 3.962 7 C -0.153 4.153 8 C -0.127 4.127 9 C -0.123 4.123 10 C -0.104 4.104 11 C 0.326 3.674 12 O -0.425 6.425 13 N -0.349 5.349 14 C 0.162 3.838 15 H 0.068 0.932 16 C -0.206 4.206 17 C -0.572 4.572 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.088 4.088 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.245 0.755 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.221 0.779 36 H 0.046 0.954 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.798 -20.386 -8.523 23.118 hybrid contribution 1.040 0.703 -0.607 1.394 sum 7.838 -19.683 -9.130 23.069 Atomic orbital electron populations 1.21564 0.92615 1.01766 1.03858 1.21633 0.99066 0.92869 1.04458 1.21077 0.81643 0.92485 0.75718 1.90823 1.54825 1.46213 1.46114 1.43559 1.07924 1.07005 1.73789 1.17609 0.95542 0.85037 0.97995 1.20952 0.96968 0.97156 1.00226 1.20850 1.00044 0.92475 0.99330 1.21405 0.94263 1.00018 0.96597 1.20215 0.96044 0.94616 0.99563 1.18198 0.84976 0.82864 0.81405 1.90738 1.24737 1.79294 1.47751 1.46478 1.28013 1.09913 1.50520 1.18783 0.92955 0.85079 0.86977 0.93214 1.22079 0.99501 0.99187 0.99787 1.21215 1.29007 0.90240 1.16755 0.92047 1.24891 0.94708 0.99371 0.94746 1.69905 1.29530 1.30747 1.21882 0.86437 0.78705 0.83500 0.78384 1.20546 1.21076 1.19844 1.21246 1.00080 0.91694 0.95820 0.91898 0.91589 0.91798 0.88786 0.88563 0.75510 0.85679 0.85182 0.85152 0.77852 0.95419 0.89069 0.96599 0.92570 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.80 16 2 C -0.14 -0.95 6.42 -27.88 -0.18 -1.13 16 3 C 0.50 5.77 7.57 -10.98 -0.08 5.69 16 4 O -0.51 -8.55 13.67 5.56 0.08 -8.48 16 5 N -0.68 -6.57 5.34 -9.89 -0.05 -6.62 16 6 C 0.13 1.71 6.27 -83.73 -0.53 1.18 16 7 C -0.13 -1.39 9.95 -39.31 -0.39 -1.79 16 8 C -0.11 -1.20 10.02 -39.67 -0.40 -1.60 16 9 C -0.10 -1.45 9.54 -39.16 -0.37 -1.82 16 10 C -0.10 -1.80 5.87 -104.99 -0.62 -2.41 16 11 C 0.54 12.11 7.74 -12.32 -0.10 12.01 16 12 O -0.55 -14.46 16.01 5.32 0.09 -14.37 16 13 N -0.70 -15.62 5.02 -55.87 -0.28 -15.90 16 14 C 0.26 7.00 2.56 -69.08 -0.18 6.82 16 15 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 16 C -0.15 -3.79 9.26 37.16 0.34 -3.44 16 17 C -0.53 -14.51 8.73 -34.44 -0.30 -14.81 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 20 N -0.88 -25.41 11.32 55.43 0.63 -24.78 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.07 -1.16 8.20 -38.98 -0.32 -1.48 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.41 2.17 8.82 -40.82 -0.36 1.81 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 34 H 0.13 1.63 6.40 -52.48 -0.34 1.30 16 35 H 0.39 7.38 6.57 -40.82 -0.27 7.12 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.15 2.90 6.01 -52.49 -0.32 2.59 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -35.53 339.36 -7.65 -43.18 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.33 Total: 7.76 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.87 Total: -1.86 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.29 Total: -47.30 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.16 Total: -22.85 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.53 -7.65 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194639108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.723 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds