Wall clock time and date at job start Tue Mar 31 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.47014 * 2 1 4 4 O 1.21280 * 120.00149 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99510 * 180.02562 * 3 2 1 6 6 C 1.39958 * 119.99381 * 185.27272 * 5 3 2 7 7 C 1.38997 * 119.99742 * 213.32423 * 6 5 3 8 8 C 1.38210 * 120.21930 * 180.02562 * 7 6 5 9 9 C 1.38026 * 120.22548 * 359.67660 * 8 7 6 10 10 C 1.39572 * 119.99433 * 0.62505 * 9 8 7 11 11 C 1.47860 * 120.11483 * 179.67049 * 10 9 8 12 12 O 1.21552 * 120.00402 * 179.72457 * 11 10 9 13 13 N 1.34776 * 119.99707 * 359.45460 * 11 10 9 14 14 C 1.46504 * 120.00166 * 180.27210 * 13 11 10 15 15 H 1.08994 * 109.46715 * 324.99733 * 14 13 11 16 16 C 1.53002 * 109.46842 * 84.99949 * 14 13 11 17 17 C 1.50700 * 109.46804 * 204.99747 * 14 13 11 18 18 H 1.07996 * 120.00841 * 0.02562 * 17 14 13 19 19 C 1.37885 * 119.99286 * 180.02562 * 17 14 13 20 20 N 1.31508 * 120.00219 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99522 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46991 * 90.00038 * 21 19 17 23 23 H 1.48505 * 109.46955 * 209.99969 * 21 19 17 24 24 H 1.48495 * 109.47102 * 329.99710 * 21 19 17 25 25 C 1.38600 * 120.00242 * 33.35309 * 6 5 3 26 26 H 1.08997 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46628 * 299.99800 * 1 2 3 28 28 H 1.08999 * 109.46862 * 59.99713 * 1 2 3 29 29 H 1.09003 * 109.47043 * 240.00418 * 2 1 3 30 30 H 1.08998 * 109.47385 * 120.00266 * 2 1 3 31 31 H 0.96996 * 120.00227 * 5.27372 * 5 3 2 32 32 H 1.07997 * 119.88981 * 0.02562 * 7 6 5 33 33 H 1.08004 * 119.88599 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.00195 * 180.31654 * 9 8 7 35 35 H 0.97007 * 120.00015 * 0.26664 * 13 11 10 36 36 H 1.09003 * 109.47330 * 59.99819 * 16 14 13 37 37 H 1.08998 * 109.46621 * 180.02562 * 16 14 13 38 38 H 1.09002 * 109.47218 * 299.99729 * 16 14 13 39 39 H 0.97000 * 119.99992 * 180.02562 * 20 19 17 40 40 H 1.08002 * 120.10394 * 0.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8249 2.9815 0.1109 7 6 4.9936 3.3609 -0.5390 8 6 5.4596 4.6576 -0.4317 9 6 4.7642 5.5863 0.3160 10 6 3.5931 5.2137 0.9776 11 6 2.8499 6.2045 1.7852 12 8 1.8275 5.8791 2.3564 13 7 3.3092 7.4671 1.8924 14 6 2.5761 8.4473 2.6975 15 1 1.5058 8.2595 2.6126 16 6 3.0010 8.3243 4.1622 17 6 2.8835 9.8363 2.2002 18 1 3.5571 9.9751 1.3676 19 6 2.3046 10.9300 2.8084 20 7 1.4840 10.7610 3.8221 21 14 2.6850 12.6517 2.1916 22 1 1.7052 13.0290 1.1415 23 1 2.5959 13.6128 3.3202 24 1 4.0564 12.6820 1.6229 25 6 3.1229 3.9048 0.8696 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9871 0.9333 -0.0781 32 1 5.5392 2.6401 -1.1297 33 1 6.3686 4.9465 -0.9386 34 1 5.1290 6.6000 0.3932 35 1 4.1251 7.7268 1.4366 36 1 4.0714 8.5120 4.2470 37 1 2.4553 9.0533 4.7612 38 1 2.7787 7.3196 4.5219 39 1 1.0765 11.5304 4.2497 40 1 2.2151 3.6116 1.3760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194639108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:36 Heat of formation + Delta-G solvation = -80.373091 kcal Electronic energy + Delta-G solvation = -22366.975122 eV Core-core repulsion = 18952.219490 eV Total energy + Delta-G solvation = -3414.755632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73371 -40.75489 -39.12650 -36.79835 -35.92035 -34.40945 -33.79789 -32.33297 -31.11879 -30.12689 -27.38903 -25.83928 -25.31376 -23.31844 -22.81505 -21.31568 -21.19607 -19.75123 -18.30785 -18.12608 -17.38904 -17.15828 -16.98765 -16.67495 -16.13419 -15.94159 -15.47664 -15.26084 -14.79776 -14.69733 -14.48871 -14.32474 -13.83969 -13.60415 -13.20450 -13.00981 -12.92414 -12.83230 -12.77835 -12.75448 -12.55742 -12.29951 -12.13327 -12.05270 -11.54464 -11.16624 -10.92671 -10.90833 -10.62889 -10.07024 -9.77007 -9.20635 -8.19860 -6.38585 -0.15887 0.27756 1.43897 1.45628 1.52136 1.56438 1.95746 2.03078 2.32139 2.54252 2.89876 3.10557 3.65171 3.80205 3.93549 4.09655 4.20310 4.22013 4.24923 4.45003 4.50796 4.67628 4.73933 4.86375 4.89611 4.95643 5.02719 5.03295 5.20417 5.28635 5.32448 5.37255 5.39372 5.44092 5.54993 5.63127 5.85937 5.95543 6.04132 6.41787 6.67861 6.86564 7.16485 7.27240 7.44894 8.87170 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.003342 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.138394 B = 8377.252800 C = 9076.620421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.494 3.506 4 O -0.573 6.573 5 N -0.659 5.659 6 C 0.128 3.872 7 C -0.105 4.105 8 C -0.094 4.094 9 C -0.103 4.103 10 C -0.133 4.133 11 C 0.534 3.466 12 O -0.604 6.604 13 N -0.694 5.694 14 C 0.269 3.731 15 H -0.007 1.007 16 C -0.133 4.133 17 C -0.549 4.549 18 H 0.077 0.923 19 C 0.012 3.988 20 N -0.919 5.919 21 Si 0.978 3.022 22 H -0.279 1.279 23 H -0.282 1.282 24 H -0.256 1.256 25 C -0.095 4.095 26 H 0.093 0.907 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.435 0.565 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.143 0.857 35 H 0.406 0.594 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.007 0.993 39 H 0.266 0.734 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.427 -22.415 -11.919 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.284 3.716 4 O -0.451 6.451 5 N -0.307 5.307 6 C 0.034 3.966 7 C -0.125 4.125 8 C -0.112 4.112 9 C -0.122 4.122 10 C -0.136 4.136 11 C 0.323 3.677 12 O -0.487 6.487 13 N -0.343 5.343 14 C 0.166 3.834 15 H 0.011 0.989 16 C -0.192 4.192 17 C -0.587 4.587 18 H 0.095 0.905 19 C -0.188 4.188 20 N -0.557 5.557 21 Si 0.802 3.198 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.179 1.179 25 C -0.117 4.117 26 H 0.111 0.889 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.275 0.725 32 H 0.196 0.804 33 H 0.196 0.804 34 H 0.161 0.839 35 H 0.243 0.757 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.076 0.924 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.009 -21.927 -11.359 27.037 hybrid contribution -0.240 1.035 0.227 1.087 sum 10.769 -20.891 -11.132 26.007 Atomic orbital electron populations 1.21589 0.94162 1.02873 1.01500 1.21716 0.97610 0.89851 1.07600 1.22073 0.81659 0.93816 0.74033 1.90818 1.56555 1.48565 1.49116 1.43471 1.08018 1.06630 1.72579 1.17743 0.95963 0.85675 0.97229 1.21537 0.94990 0.97973 0.97982 1.21395 1.00595 0.91751 0.97431 1.21607 0.92782 1.01571 0.96250 1.19833 0.98165 0.93717 1.01924 1.19034 0.84454 0.83362 0.80889 1.90691 1.27464 1.80276 1.50289 1.46181 1.28338 1.09449 1.50302 1.18418 0.90460 0.86424 0.88143 0.98880 1.21898 1.00148 0.97984 0.99128 1.21530 1.29484 0.90336 1.17333 0.90505 1.25886 0.94230 1.03930 0.94723 1.70066 1.30443 1.32096 1.23135 0.85252 0.79184 0.77650 0.77688 1.20450 1.20756 1.17930 1.21040 0.99819 0.92889 0.97949 0.88863 0.94577 0.93699 0.84794 0.85734 0.72478 0.80426 0.80437 0.83885 0.75731 0.93559 0.91155 0.97370 0.92441 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.20 71.98 0.66 -1.67 16 2 C -0.13 -1.46 6.42 29.85 0.19 -1.27 16 3 C 0.49 11.19 7.57 87.66 0.66 11.85 16 4 O -0.57 -20.88 13.67 -3.03 -0.04 -20.92 16 5 N -0.66 -11.30 5.34 -303.59 -1.62 -12.92 16 6 C 0.13 3.11 6.27 38.11 0.24 3.35 16 7 C -0.10 -1.67 9.95 22.45 0.22 -1.44 16 8 C -0.09 -1.59 10.02 22.21 0.22 -1.37 16 9 C -0.10 -2.68 9.54 22.54 0.21 -2.46 16 10 C -0.13 -4.93 5.87 -20.10 -0.12 -5.05 16 11 C 0.53 25.77 7.74 86.79 0.67 26.44 16 12 O -0.60 -35.42 16.01 -3.88 -0.06 -35.48 16 13 N -0.69 -32.32 5.02 -448.96 -2.25 -34.58 16 14 C 0.27 15.07 2.56 44.24 0.11 15.19 16 15 H -0.01 -0.45 7.58 -2.39 -0.02 -0.47 16 16 C -0.13 -7.20 9.26 71.98 0.67 -6.53 16 17 C -0.55 -30.35 8.73 25.60 0.22 -30.13 16 18 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 19 C 0.01 0.68 5.30 84.66 0.45 1.13 16 20 N -0.92 -54.71 11.32 21.45 0.24 -54.47 16 21 Si 0.98 42.98 29.54 68.60 2.03 45.01 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 25 C -0.10 -3.46 8.20 22.66 0.19 -3.27 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.03 0.78 8.10 -2.39 -0.02 0.76 16 28 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 29 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.43 2.72 8.82 -92.71 -0.82 1.90 16 32 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.14 3.25 6.40 -2.91 -0.02 3.23 16 35 H 0.41 15.56 6.57 -92.70 -0.61 14.95 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 4.10 6.07 -2.39 -0.01 4.09 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.10 4.57 6.01 -2.91 -0.02 4.55 16 Total: -1.00 -88.55 339.36 2.55 -86.00 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -0.35 Total: 22.59 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 4.61 Total: 4.76 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -3.63 Total: -101.96 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.10 Total: -56.40 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -88.55 2.55 -86.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194639108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.631 kcal (2) G-P(sol) polarization free energy of solvation -88.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds