Wall clock time and date at job start Tue Mar 31 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47068 * 2 1 4 4 C 1.50697 * 109.47300 * 239.99761 * 2 1 3 5 5 H 1.07998 * 119.99906 * 239.99482 * 4 2 1 6 6 C 1.37874 * 120.00184 * 60.00068 * 4 2 1 7 7 N 1.31518 * 119.99811 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00365 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46886 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47011 * 119.99966 * 8 6 4 11 11 H 1.48496 * 109.47473 * 240.00046 * 8 6 4 12 12 N 1.46898 * 109.47265 * 119.99766 * 2 1 3 13 13 C 1.46897 * 111.00474 * 176.05228 * 12 2 1 14 14 C 1.46906 * 111.00228 * 300.00376 * 12 2 1 15 15 C 1.50698 * 109.47629 * 169.99675 * 14 12 2 16 16 C 1.32565 * 119.99815 * 126.58425 * 15 14 12 17 17 C 1.47816 * 120.00255 * 7.09827 * 16 15 14 18 18 C 1.39552 * 120.13704 * 41.87173 * 17 16 15 19 19 C 1.37954 * 119.85156 * 179.97438 * 18 17 16 20 20 C 1.38366 * 120.14658 * 0.02562 * 19 18 17 21 21 C 1.38324 * 120.27965 * 359.71995 * 20 19 18 22 22 C 1.37994 * 120.14405 * 0.55405 * 21 20 19 23 23 N 1.48006 * 120.07180 * 179.71748 * 22 21 20 24 24 O 1.21799 * 120.00268 * 354.90972 * 23 22 21 25 25 O 1.21798 * 120.00154 * 174.62178 * 23 22 21 26 26 H 1.08998 * 109.47700 * 299.99939 * 1 2 3 27 27 H 1.08999 * 109.47141 * 60.01034 * 1 2 3 28 28 H 1.09009 * 109.46906 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00059 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47363 * 183.95874 * 13 12 2 31 31 H 1.09008 * 109.46720 * 303.95140 * 13 12 2 32 32 H 1.08994 * 109.47277 * 63.95088 * 13 12 2 33 33 H 1.09007 * 109.46760 * 49.99679 * 14 12 2 34 34 H 1.09001 * 109.47026 * 290.00026 * 14 12 2 35 35 H 1.07998 * 119.99915 * 306.58435 * 15 14 12 36 36 H 1.07998 * 119.99549 * 187.10444 * 16 15 14 37 37 H 1.08000 * 120.07708 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.92579 * 179.97438 * 19 18 17 39 39 H 1.07991 * 119.85859 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.92711 * 180.28267 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 3.1475 -2.2865 -3.6036 10 1 1.1679 -1.5868 -4.8164 11 1 3.1474 -0.1860 -4.8160 12 7 2.0197 -0.6924 1.1994 13 6 3.4850 -0.7944 1.1872 14 6 1.5486 -0.0263 2.4211 15 6 1.8578 -0.8910 3.6160 16 6 2.5296 -0.3879 4.6421 17 6 2.8387 1.0569 4.6863 18 6 1.8746 1.9916 4.3063 19 6 2.1692 3.3386 4.3503 20 6 3.4175 3.7636 4.7695 21 6 4.3756 2.8423 5.1524 22 6 4.0955 1.4919 5.1076 23 7 5.1240 0.5073 5.5117 24 8 6.2477 0.8820 5.7954 25 8 4.8454 -0.6771 5.5657 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 0.0005 29 1 0.7090 1.1613 -3.4844 30 1 3.8163 -1.3720 2.0501 31 1 3.8070 -1.2914 0.2720 32 1 3.9191 0.2045 1.2302 33 1 0.4721 0.1324 2.3564 34 1 2.0518 0.9347 2.5281 35 1 1.5322 -1.9205 3.6363 36 1 2.8511 -1.0337 5.4458 37 1 0.8997 1.6612 3.9794 38 1 1.4240 4.0630 4.0562 39 1 3.6432 4.8191 4.8018 40 1 5.3466 3.1806 5.4830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255328399.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:54 Heat of formation + Delta-G solvation = 56.176137 kcal Electronic energy + Delta-G solvation = -23210.239143 eV Core-core repulsion = 19801.404730 eV Total energy + Delta-G solvation = -3408.834413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16247 -39.74248 -37.42205 -36.55373 -34.64089 -32.65456 -32.11576 -30.27418 -29.08184 -27.27855 -26.32974 -24.80926 -23.78606 -22.54610 -22.45263 -19.99526 -19.59269 -18.65028 -18.25948 -17.48406 -16.50880 -16.08834 -15.78511 -15.42394 -14.95827 -14.74616 -14.20106 -13.88029 -13.39794 -13.15833 -13.01949 -12.55479 -12.34624 -12.02076 -11.96357 -11.47479 -11.28920 -11.20856 -11.12248 -11.08339 -10.93031 -10.72127 -10.55879 -10.21058 -10.11170 -9.94361 -9.86437 -9.64045 -8.94318 -8.62775 -8.43587 -7.25586 -6.07459 -4.11767 -0.21208 0.67365 1.34256 1.45519 2.24657 3.22521 3.26305 3.34435 3.39312 4.25096 4.26177 4.36879 4.54006 4.72138 4.79830 4.93426 5.06741 5.22988 5.27859 5.40752 5.53856 5.70598 5.73586 5.89538 5.94453 6.08827 6.12615 6.20878 6.33167 6.49970 6.58828 6.65198 6.74379 6.76818 6.95258 7.06719 7.42065 7.63315 7.72151 7.76921 8.10539 8.23863 8.51225 8.94748 9.53666 10.99489 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.004144 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.066444 B = 6755.764013 C = 7096.005843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.531 5.531 13 C 0.039 3.961 14 C 0.053 3.947 15 C -0.075 4.075 16 C -0.176 4.176 17 C 0.034 3.966 18 C -0.112 4.112 19 C -0.067 4.067 20 C -0.128 4.128 21 C -0.058 4.058 22 C -0.050 4.050 23 N 0.036 4.964 24 O -0.178 6.178 25 O -0.152 6.152 26 H 0.007 0.993 27 H 0.086 0.914 28 H 0.036 0.964 29 H 0.260 0.740 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.005 0.995 33 H 0.089 0.911 34 H 0.036 0.964 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 5.513 15.728 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.256 5.256 13 C -0.110 4.110 14 C -0.074 4.074 15 C -0.093 4.093 16 C -0.194 4.194 17 C 0.033 3.967 18 C -0.130 4.130 19 C -0.085 4.085 20 C -0.146 4.146 21 C -0.077 4.077 22 C -0.133 4.133 23 N 0.553 4.447 24 O -0.389 6.389 25 O -0.369 6.369 26 H 0.026 0.974 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.023 0.977 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.468 5.639 15.360 16.369 hybrid contribution 0.975 0.203 -0.829 1.296 sum 1.443 5.842 14.531 15.728 Atomic orbital electron populations 1.21870 0.97667 0.99792 0.99806 1.19262 0.92324 0.91951 0.85845 0.98586 1.21187 1.31009 1.12335 0.89670 0.91718 1.24928 0.95158 0.95065 0.99065 1.69894 1.37012 1.23057 1.23369 0.86457 0.78641 0.79652 0.82793 1.19676 1.20957 1.21132 1.62121 1.09399 1.52421 1.01611 1.22218 0.88517 0.98503 1.01763 1.21740 1.01408 0.94375 0.89897 1.23653 0.91878 1.00800 0.93014 1.21924 1.03216 0.91325 1.02956 1.19050 0.89831 0.96024 0.91785 1.21564 0.99986 0.92125 0.99370 1.21581 0.96870 0.96076 0.93943 1.21195 0.92965 1.00054 1.00418 1.20957 1.01140 0.89775 0.95792 1.21207 0.89788 0.89092 1.13231 1.43508 1.01530 1.01810 0.97816 1.94511 1.07015 1.84810 1.52595 1.94495 1.85645 1.00391 1.56375 0.97431 0.89534 0.94495 0.93016 0.93662 0.90242 0.97671 0.89324 0.94610 0.85289 0.83532 0.83274 0.83914 0.83817 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.76 37.16 0.33 -2.79 16 2 C 0.21 5.22 2.06 -68.87 -0.14 5.08 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.52 16 4 C -0.50 -13.60 7.88 -34.44 -0.27 -13.87 16 5 H 0.06 1.76 6.40 -52.49 -0.34 1.42 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.53 -11.20 4.61 -237.73 -1.10 -12.29 16 13 C 0.04 0.79 9.09 60.06 0.55 1.34 16 14 C 0.05 0.90 3.65 -4.97 -0.02 0.88 16 15 C -0.07 -1.08 8.57 -36.22 -0.31 -1.39 16 16 C -0.18 -2.38 8.18 -37.57 -0.31 -2.69 16 17 C 0.03 0.46 5.05 -105.02 -0.53 -0.07 16 18 C -0.11 -1.27 7.34 -39.20 -0.29 -1.55 16 19 C -0.07 -0.61 10.03 -39.64 -0.40 -1.01 16 20 C -0.13 -1.13 10.04 -39.50 -0.40 -1.52 16 21 C -0.06 -0.63 9.55 -39.64 -0.38 -1.00 16 22 C -0.05 -0.68 6.87 -79.57 -0.55 -1.22 16 23 N 0.04 0.56 4.45 34.15 0.15 0.71 16 24 O -0.18 -2.80 18.46 -29.46 -0.54 -3.34 16 25 O -0.15 -2.44 15.61 -29.46 -0.46 -2.90 16 26 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 27 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 28 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.04 0.84 7.28 -51.93 -0.38 0.47 16 31 H 0.08 1.73 6.10 -51.92 -0.32 1.42 16 32 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.09 1.46 5.78 -51.93 -0.30 1.16 16 34 H 0.04 0.61 4.87 -51.93 -0.25 0.36 16 35 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.15 1.92 6.32 -52.49 -0.33 1.59 16 37 H 0.15 1.56 6.72 -52.49 -0.35 1.20 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.15 1.39 7.62 -52.49 -0.40 0.99 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -30.00 327.96 -9.19 -39.19 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.98 Total: 0.26 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.81 Total: -18.32 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.32 Total: -35.94 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -1.00 Total: -6.24 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.00 -9.19 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255328399.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.367 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds