Wall clock time and date at job start Tue Mar 31 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47068 * 2 1 4 4 C 1.50697 * 109.47300 * 239.99761 * 2 1 3 5 5 H 1.07998 * 119.99906 * 239.99482 * 4 2 1 6 6 C 1.37874 * 120.00184 * 60.00068 * 4 2 1 7 7 N 1.31518 * 119.99811 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00365 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46886 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47011 * 119.99966 * 8 6 4 11 11 H 1.48496 * 109.47473 * 240.00046 * 8 6 4 12 12 N 1.46898 * 109.47265 * 119.99766 * 2 1 3 13 13 C 1.46897 * 111.00474 * 176.05228 * 12 2 1 14 14 C 1.46906 * 111.00228 * 300.00376 * 12 2 1 15 15 C 1.50698 * 109.47629 * 169.99675 * 14 12 2 16 16 C 1.32565 * 119.99815 * 126.58425 * 15 14 12 17 17 C 1.47816 * 120.00255 * 7.09827 * 16 15 14 18 18 C 1.39552 * 120.13704 * 41.87173 * 17 16 15 19 19 C 1.37954 * 119.85156 * 179.97438 * 18 17 16 20 20 C 1.38366 * 120.14658 * 0.02562 * 19 18 17 21 21 C 1.38324 * 120.27965 * 359.71995 * 20 19 18 22 22 C 1.37994 * 120.14405 * 0.55405 * 21 20 19 23 23 N 1.48006 * 120.07180 * 179.71748 * 22 21 20 24 24 O 1.21799 * 120.00268 * 354.90972 * 23 22 21 25 25 O 1.21798 * 120.00154 * 174.62178 * 23 22 21 26 26 H 1.08998 * 109.47700 * 299.99939 * 1 2 3 27 27 H 1.08999 * 109.47141 * 60.01034 * 1 2 3 28 28 H 1.09009 * 109.46906 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00059 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47363 * 183.95874 * 13 12 2 31 31 H 1.09008 * 109.46720 * 303.95140 * 13 12 2 32 32 H 1.08994 * 109.47277 * 63.95088 * 13 12 2 33 33 H 1.09007 * 109.46760 * 49.99679 * 14 12 2 34 34 H 1.09001 * 109.47026 * 290.00026 * 14 12 2 35 35 H 1.07998 * 119.99915 * 306.58435 * 15 14 12 36 36 H 1.07998 * 119.99549 * 187.10444 * 16 15 14 37 37 H 1.08000 * 120.07708 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.92579 * 179.97438 * 19 18 17 39 39 H 1.07991 * 119.85859 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.92711 * 180.28267 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 3.1475 -2.2865 -3.6036 10 1 1.1679 -1.5868 -4.8164 11 1 3.1474 -0.1860 -4.8160 12 7 2.0197 -0.6924 1.1994 13 6 3.4850 -0.7944 1.1872 14 6 1.5486 -0.0263 2.4211 15 6 1.8578 -0.8910 3.6160 16 6 2.5296 -0.3879 4.6421 17 6 2.8387 1.0569 4.6863 18 6 1.8746 1.9916 4.3063 19 6 2.1692 3.3386 4.3503 20 6 3.4175 3.7636 4.7695 21 6 4.3756 2.8423 5.1524 22 6 4.0955 1.4919 5.1076 23 7 5.1240 0.5073 5.5117 24 8 6.2477 0.8820 5.7954 25 8 4.8454 -0.6771 5.5657 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 0.0005 29 1 0.7090 1.1613 -3.4844 30 1 3.8163 -1.3720 2.0501 31 1 3.8070 -1.2914 0.2720 32 1 3.9191 0.2045 1.2302 33 1 0.4721 0.1324 2.3564 34 1 2.0518 0.9347 2.5281 35 1 1.5322 -1.9205 3.6363 36 1 2.8511 -1.0337 5.4458 37 1 0.8997 1.6612 3.9794 38 1 1.4240 4.0630 4.0562 39 1 3.6432 4.8191 4.8018 40 1 5.3466 3.1806 5.4830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255328399.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:53 Heat of formation + Delta-G solvation = 39.897628 kcal Electronic energy + Delta-G solvation = -23210.945032 eV Core-core repulsion = 19801.404730 eV Total energy + Delta-G solvation = -3409.540302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.27953 -40.69752 -38.94554 -37.74120 -35.97535 -34.43202 -33.05790 -31.49130 -30.74845 -28.75100 -27.46042 -26.63509 -25.23312 -23.73289 -23.47183 -21.40653 -21.02526 -19.79412 -19.31020 -18.62454 -18.35861 -17.28030 -17.05222 -16.76127 -16.07616 -15.96103 -15.73821 -15.24497 -14.90432 -14.56491 -14.14503 -13.91034 -13.71943 -13.36963 -13.03818 -12.99525 -12.90727 -12.70264 -12.62928 -12.46229 -12.33428 -12.29772 -12.08976 -11.98866 -11.96234 -11.55054 -11.07441 -10.77741 -10.53637 -10.52121 -9.62740 -8.95018 -8.13725 -6.24733 -1.25549 -0.18585 0.31596 0.42042 1.19316 1.39351 1.42180 1.53243 2.35976 2.41367 3.14649 3.31729 3.37306 3.42404 3.77062 3.94916 4.01879 4.04940 4.14978 4.35093 4.46372 4.48949 4.62703 4.64311 4.75690 4.89398 4.95699 4.98938 5.02183 5.02713 5.12607 5.20438 5.20916 5.48652 5.49018 5.53046 5.57101 5.70858 5.80566 6.24938 6.32384 6.53155 6.69037 6.88803 7.44383 8.92161 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.004144 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.066444 B = 6755.764013 C = 7096.005843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.218 3.782 3 H -0.037 1.037 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.282 1.282 12 N -0.538 5.538 13 C 0.049 3.951 14 C 0.059 3.941 15 C -0.088 4.088 16 C -0.157 4.157 17 C 0.009 3.991 18 C -0.122 4.122 19 C -0.058 4.058 20 C -0.114 4.114 21 C -0.062 4.062 22 C -0.071 4.071 23 N 0.036 4.964 24 O -0.188 6.188 25 O -0.179 6.179 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.062 0.938 31 H 0.060 0.940 32 H -0.005 1.005 33 H 0.094 0.906 34 H 0.038 0.962 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.177 0.823 39 H 0.184 0.816 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 6.863 16.260 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H -0.020 1.020 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.208 1.208 12 N -0.262 5.262 13 C -0.100 4.100 14 C -0.068 4.068 15 C -0.107 4.107 16 C -0.176 4.176 17 C 0.008 3.992 18 C -0.140 4.140 19 C -0.075 4.075 20 C -0.132 4.132 21 C -0.081 4.081 22 C -0.155 4.155 23 N 0.549 4.451 24 O -0.399 6.399 25 O -0.391 6.391 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.013 0.987 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.194 0.806 39 H 0.201 0.799 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.110 6.949 15.917 17.368 hybrid contribution 1.090 -0.052 -0.905 1.418 sum 1.200 6.898 15.011 16.564 Atomic orbital electron populations 1.21676 0.96694 0.99508 1.00077 1.19051 0.93000 0.90037 0.86816 1.01961 1.21462 1.31130 1.12300 0.91107 0.92563 1.25639 0.95353 0.95748 1.01677 1.70001 1.37689 1.24012 1.24010 0.85534 0.78198 0.78603 0.79475 1.19502 1.20370 1.20761 1.62034 1.09488 1.52610 1.02077 1.22093 0.88425 0.97919 1.01555 1.21734 1.01520 0.94663 0.88836 1.23429 0.93862 1.00910 0.92468 1.22003 1.01310 0.91956 1.02342 1.19185 0.90477 0.96102 0.93461 1.21786 0.99893 0.92988 0.99344 1.22064 0.97763 0.95730 0.91992 1.21700 0.91938 1.01547 0.98015 1.21328 1.02434 0.88889 0.95464 1.21469 0.89490 0.89617 1.14914 1.43844 1.01837 1.02055 0.97398 1.94480 1.07788 1.84779 1.52888 1.94475 1.85792 1.01317 1.57546 0.94351 0.92050 0.94886 0.92881 0.91892 0.92074 0.98659 0.88831 0.94452 0.84557 0.83384 0.82641 0.80556 0.79905 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.76 71.98 0.63 -5.01 16 2 C 0.22 10.81 2.06 44.17 0.09 10.90 16 3 H -0.04 -2.06 8.14 -2.39 -0.02 -2.08 16 4 C -0.52 -28.51 7.88 25.60 0.20 -28.31 16 5 H 0.06 3.11 6.40 -2.91 -0.02 3.09 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -51.59 11.32 21.45 0.24 -51.35 16 8 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 N -0.54 -22.63 4.61 -906.04 -4.18 -26.81 16 13 C 0.05 2.01 9.09 127.69 1.16 3.17 16 14 C 0.06 1.96 3.65 85.56 0.31 2.27 16 15 C -0.09 -2.47 8.57 24.53 0.21 -2.26 16 16 C -0.16 -4.18 8.18 23.66 0.19 -3.99 16 17 C 0.01 0.23 5.05 -20.12 -0.10 0.13 16 18 C -0.12 -2.49 7.34 22.52 0.17 -2.32 16 19 C -0.06 -0.85 10.03 22.23 0.22 -0.63 16 20 C -0.11 -1.56 10.04 22.32 0.22 -1.34 16 21 C -0.06 -1.21 9.55 22.23 0.21 -1.00 16 22 C -0.07 -1.86 6.87 36.63 0.25 -1.61 16 23 N 0.04 1.12 4.45 -45.88 -0.20 0.92 16 24 O -0.19 -5.91 18.46 18.89 0.35 -5.56 16 25 O -0.18 -5.84 15.61 18.89 0.29 -5.55 16 26 H 0.04 1.49 6.20 -2.39 -0.01 1.48 16 27 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 28 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.06 2.35 7.28 -2.39 -0.02 2.33 16 31 H 0.06 2.72 6.10 -2.38 -0.01 2.70 16 32 H -0.01 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.09 2.95 5.78 -2.38 -0.01 2.93 16 34 H 0.04 1.24 4.87 -2.39 -0.01 1.23 16 35 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.15 3.87 6.32 -2.91 -0.02 3.85 16 37 H 0.16 2.91 6.72 -2.91 -0.02 2.89 16 38 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.18 1.10 8.06 -2.92 -0.02 1.07 16 40 H 0.16 2.66 7.62 -2.91 -0.02 2.63 16 Total: -1.00 -65.60 327.96 3.81 -61.79 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.06 Total: 9.83 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 4.22 Total: -28.74 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -4.14 Total: -77.24 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.64 Total: -11.11 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -65.60 3.81 -61.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255328399.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.688 kcal (2) G-P(sol) polarization free energy of solvation -65.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds