Wall clock time and date at job start Tue Mar 31 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41595 * 113.99783 * 2 1 4 4 C 1.29341 * 119.99946 * 179.97438 * 3 2 1 5 5 C 1.47604 * 119.99911 * 179.97438 * 4 3 2 6 6 C 1.39725 * 120.00414 * 179.97438 * 5 4 3 7 7 C 1.37656 * 119.99631 * 179.97438 * 6 5 4 8 8 C 1.39693 * 120.00619 * 359.97438 * 7 6 5 9 9 C 1.47799 * 119.99810 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99958 * 221.65426 * 9 8 7 11 11 N 1.34776 * 119.99482 * 41.64841 * 9 8 7 12 12 C 1.46495 * 120.00377 * 355.46687 * 11 9 8 13 13 C 1.46504 * 119.99409 * 175.46352 * 11 9 8 14 14 H 1.08998 * 109.47579 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47259 * 239.99797 * 13 11 9 16 16 C 1.50701 * 109.47021 * 120.00438 * 13 11 9 17 17 H 1.08006 * 119.99909 * 359.97438 * 16 13 11 18 18 C 1.37877 * 120.00443 * 180.02562 * 16 13 11 19 19 N 1.31518 * 119.99700 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00237 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47289 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47318 * 119.99902 * 20 18 16 23 23 H 1.48504 * 109.46890 * 239.99838 * 20 18 16 24 24 C 1.39686 * 120.00623 * 0.27874 * 8 7 6 25 25 C 1.37661 * 120.00418 * 359.48399 * 24 8 7 26 26 H 1.08997 * 109.47315 * 300.00152 * 1 2 3 27 27 H 1.09000 * 109.47060 * 60.00442 * 1 2 3 28 28 H 1.09005 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.07993 * 120.00061 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.99955 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.99702 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47106 * 275.16697 * 12 11 9 33 33 H 1.09000 * 109.47192 * 35.17128 * 12 11 9 34 34 H 1.09008 * 109.47196 * 155.17206 * 12 11 9 35 35 H 1.09009 * 109.46550 * 60.00466 * 15 13 11 36 36 H 1.08994 * 109.47414 * 179.97438 * 15 13 11 37 37 H 1.08998 * 109.47333 * 300.00772 * 15 13 11 38 38 H 0.97001 * 120.00141 * 180.02562 * 19 18 16 39 39 H 1.07996 * 119.99838 * 179.72167 * 24 8 7 40 40 H 1.07997 * 120.00533 * 180.27754 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 3.2912 1.4288 0.0005 5 6 3.8915 2.7772 -0.0001 6 6 5.2811 2.9235 0.0010 7 6 5.8408 4.1811 -0.0001 8 6 5.0196 5.3112 -0.0028 9 6 5.6207 6.6614 -0.0033 10 8 5.1482 7.5374 0.6945 11 7 6.6929 6.9213 -0.7775 12 6 7.3232 5.8423 -1.5421 13 6 7.2278 8.2830 -0.8545 14 1 6.6335 8.9432 -0.2229 15 6 7.1691 8.7730 -2.3028 16 6 8.6583 8.2883 -0.3802 17 1 9.1223 7.3693 -0.0537 18 6 9.3743 9.4664 -0.3622 19 7 8.8091 10.5856 -0.7593 20 14 11.1476 9.4728 0.2251 21 1 11.5451 8.0959 0.6142 22 1 12.0296 9.9526 -0.8689 23 1 11.2775 10.3750 1.3974 24 6 3.6304 5.1652 0.0015 25 6 3.0703 3.9077 -0.0024 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9260 0.5551 0.0005 30 1 5.9160 2.0498 0.0027 31 1 6.9149 4.2941 0.0004 32 1 8.0365 5.3162 -0.9076 33 1 6.5586 5.1452 -1.8849 34 1 7.8436 6.2628 -2.4027 35 1 6.1344 8.7692 -2.6459 36 1 7.5666 9.7862 -2.3600 37 1 7.7636 8.1127 -2.9342 38 1 9.3129 11.4144 -0.7470 39 1 2.9957 6.0390 0.0040 40 1 1.9963 3.7949 -0.0036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264085493.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:30 Heat of formation + Delta-G solvation = 16.173266 kcal Electronic energy + Delta-G solvation = -22189.955830 eV Core-core repulsion = 18779.386762 eV Total energy + Delta-G solvation = -3410.569068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01606 -38.37518 -37.54143 -35.42376 -34.45072 -32.91597 -31.12705 -30.82883 -29.05174 -26.83064 -26.33277 -25.25249 -24.39029 -22.73735 -21.47407 -20.46847 -18.89391 -17.63369 -16.92457 -16.47909 -16.21327 -15.64469 -15.50246 -15.18691 -14.82800 -14.65801 -14.12440 -14.05538 -13.46186 -13.17221 -13.07377 -12.69641 -12.61523 -12.43113 -12.03446 -11.96497 -11.58785 -11.47502 -11.10773 -11.03453 -10.80155 -10.73317 -10.29187 -10.22164 -10.20913 -10.18643 -9.20819 -9.10625 -9.01541 -8.54831 -8.44498 -7.65102 -6.09273 -4.17261 0.47080 1.35707 2.09378 2.41010 3.24951 3.30708 3.33623 3.36312 3.79556 3.96570 4.37800 4.40936 4.75747 4.87716 4.93495 5.07708 5.08094 5.11296 5.22266 5.30454 5.33668 5.42381 5.66114 5.76280 5.86091 5.92360 6.03916 6.23912 6.26053 6.32731 6.43475 6.73433 6.76822 6.81225 7.01758 7.20489 7.38160 7.47836 7.68680 7.98133 8.16003 8.45353 8.79078 8.96593 9.49187 10.96147 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038570 B = 0.002917 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.778063 B = 9596.061247 C = 9894.423995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.248 6.248 3 N -0.340 5.340 4 C 0.155 3.845 5 C -0.058 4.058 6 C -0.092 4.092 7 C -0.099 4.099 8 C -0.091 4.091 9 C 0.540 3.460 10 O -0.543 6.543 11 N -0.584 5.584 12 C 0.081 3.919 13 C 0.256 3.744 14 H 0.064 0.936 15 C -0.148 4.148 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.079 4.079 25 C -0.085 4.085 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.012 0.988 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.263 0.737 39 H 0.135 0.865 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.810 -18.545 -1.802 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.262 6.262 3 N -0.086 5.086 4 C -0.054 4.054 5 C -0.059 4.059 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.096 4.096 9 C 0.327 3.673 10 O -0.422 6.422 11 N -0.314 5.314 12 C -0.062 4.062 13 C 0.156 3.844 14 H 0.082 0.918 15 C -0.206 4.206 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.097 4.097 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.031 0.969 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.153 0.847 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.809 -17.681 -1.482 20.776 hybrid contribution 1.456 -0.561 0.262 1.582 sum -9.353 -18.242 -1.220 20.536 Atomic orbital electron populations 1.22703 0.78671 1.02408 1.01282 1.89822 1.22209 1.20434 1.93734 1.76663 1.13909 1.03945 1.14074 1.24313 0.91906 0.96820 0.92397 1.18465 0.93187 0.90008 1.04261 1.21111 0.93028 0.97731 0.99306 1.21590 1.00973 0.91154 0.98015 1.20447 0.94397 0.94389 1.00320 1.18278 0.81080 0.86956 0.81017 1.90757 1.62979 1.47014 1.41459 1.48201 1.27901 1.11927 1.43340 1.21853 0.97268 0.90373 0.96747 1.19014 0.94385 0.76526 0.94427 0.91771 1.22109 0.96999 1.04201 0.97289 1.21331 0.96416 0.94697 1.43825 0.92176 1.24903 0.98542 0.95337 0.95080 1.69887 1.36785 0.98938 1.46967 0.86423 0.84300 0.78119 0.78441 1.19809 1.20945 1.20914 1.21181 0.93645 0.97698 0.97206 1.21270 1.00247 0.91141 0.97840 0.93142 0.93137 0.88690 0.85772 0.84849 0.83960 0.93092 0.92408 0.90536 0.96906 0.88675 0.94991 0.92707 0.84749 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 11.47 101.05 1.16 1.51 16 2 O -0.25 -2.81 11.72 -11.47 -0.13 -2.94 16 3 N -0.34 -4.01 10.45 32.12 0.34 -3.67 16 4 C 0.16 1.58 10.90 -14.78 -0.16 1.42 16 5 C -0.06 -0.63 5.87 -104.96 -0.62 -1.25 16 6 C -0.09 -0.93 9.77 -39.24 -0.38 -1.32 16 7 C -0.10 -1.26 7.60 -39.25 -0.30 -1.56 16 8 C -0.09 -1.45 5.16 -104.90 -0.54 -1.99 16 9 C 0.54 11.27 7.32 -12.35 -0.09 11.18 16 10 O -0.54 -13.55 16.28 5.32 0.09 -13.47 16 11 N -0.58 -12.26 2.75 -176.39 -0.49 -12.74 16 12 C 0.08 1.31 8.13 59.84 0.49 1.80 16 13 C 0.26 6.46 2.63 -69.08 -0.18 6.28 16 14 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 15 C -0.15 -3.46 8.96 37.16 0.33 -3.13 16 16 C -0.52 -13.94 8.37 -34.44 -0.29 -14.23 16 17 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.85 11.32 55.43 0.63 -24.23 16 20 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 C -0.08 -1.12 9.63 -39.25 -0.38 -1.50 16 25 C -0.09 -1.03 9.56 -39.24 -0.38 -1.41 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.14 1.72 5.52 -52.49 -0.29 1.43 16 32 H 0.05 0.76 6.85 -51.93 -0.36 0.40 16 33 H 0.06 0.77 6.00 -51.93 -0.31 0.46 16 34 H 0.08 1.26 6.44 -51.92 -0.33 0.93 16 35 H 0.01 0.27 8.14 -51.92 -0.42 -0.16 16 36 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 37 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.13 1.50 7.54 -52.49 -0.40 1.10 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -32.21 338.71 -6.12 -38.33 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.20 Total: 0.40 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -1.43 Total: -2.57 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.48 Total: -40.64 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.05 Total: -16.41 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.21 -6.12 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264085493.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.501 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds