Wall clock time and date at job start Tue Mar 31 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41595 * 113.99783 * 2 1 4 4 C 1.29341 * 119.99946 * 179.97438 * 3 2 1 5 5 C 1.47604 * 119.99911 * 179.97438 * 4 3 2 6 6 C 1.39725 * 120.00414 * 179.97438 * 5 4 3 7 7 C 1.37656 * 119.99631 * 179.97438 * 6 5 4 8 8 C 1.39693 * 120.00619 * 359.97438 * 7 6 5 9 9 C 1.47799 * 119.99810 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99958 * 221.65426 * 9 8 7 11 11 N 1.34776 * 119.99482 * 41.64841 * 9 8 7 12 12 C 1.46495 * 120.00377 * 355.46687 * 11 9 8 13 13 C 1.46504 * 119.99409 * 175.46352 * 11 9 8 14 14 H 1.08998 * 109.47579 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47259 * 239.99797 * 13 11 9 16 16 C 1.50701 * 109.47021 * 120.00438 * 13 11 9 17 17 H 1.08006 * 119.99909 * 359.97438 * 16 13 11 18 18 C 1.37877 * 120.00443 * 180.02562 * 16 13 11 19 19 N 1.31518 * 119.99700 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00237 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47289 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47318 * 119.99902 * 20 18 16 23 23 H 1.48504 * 109.46890 * 239.99838 * 20 18 16 24 24 C 1.39686 * 120.00623 * 0.27874 * 8 7 6 25 25 C 1.37661 * 120.00418 * 359.48399 * 24 8 7 26 26 H 1.08997 * 109.47315 * 300.00152 * 1 2 3 27 27 H 1.09000 * 109.47060 * 60.00442 * 1 2 3 28 28 H 1.09005 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.07993 * 120.00061 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.99955 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.99702 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47106 * 275.16697 * 12 11 9 33 33 H 1.09000 * 109.47192 * 35.17128 * 12 11 9 34 34 H 1.09008 * 109.47196 * 155.17206 * 12 11 9 35 35 H 1.09009 * 109.46550 * 60.00466 * 15 13 11 36 36 H 1.08994 * 109.47414 * 179.97438 * 15 13 11 37 37 H 1.08998 * 109.47333 * 300.00772 * 15 13 11 38 38 H 0.97001 * 120.00141 * 180.02562 * 19 18 16 39 39 H 1.07996 * 119.99838 * 179.72167 * 24 8 7 40 40 H 1.07997 * 120.00533 * 180.27754 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 3.2912 1.4288 0.0005 5 6 3.8915 2.7772 -0.0001 6 6 5.2811 2.9235 0.0010 7 6 5.8408 4.1811 -0.0001 8 6 5.0196 5.3112 -0.0028 9 6 5.6207 6.6614 -0.0033 10 8 5.1482 7.5374 0.6945 11 7 6.6929 6.9213 -0.7775 12 6 7.3232 5.8423 -1.5421 13 6 7.2278 8.2830 -0.8545 14 1 6.6335 8.9432 -0.2229 15 6 7.1691 8.7730 -2.3028 16 6 8.6583 8.2883 -0.3802 17 1 9.1223 7.3693 -0.0537 18 6 9.3743 9.4664 -0.3622 19 7 8.8091 10.5856 -0.7593 20 14 11.1476 9.4728 0.2251 21 1 11.5451 8.0959 0.6142 22 1 12.0296 9.9526 -0.8689 23 1 11.2775 10.3750 1.3974 24 6 3.6304 5.1652 0.0015 25 6 3.0703 3.9077 -0.0024 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9260 0.5551 0.0005 30 1 5.9160 2.0498 0.0027 31 1 6.9149 4.2941 0.0004 32 1 8.0365 5.3162 -0.9076 33 1 6.5586 5.1452 -1.8849 34 1 7.8436 6.2628 -2.4027 35 1 6.1344 8.7692 -2.6459 36 1 7.5666 9.7862 -2.3600 37 1 7.7636 8.1127 -2.9342 38 1 9.3129 11.4144 -0.7470 39 1 2.9957 6.0390 0.0040 40 1 1.9963 3.7949 -0.0036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264085493.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:30 Heat of formation + Delta-G solvation = -3.989251 kcal Electronic energy + Delta-G solvation = -22190.830142 eV Core-core repulsion = 18779.386762 eV Total energy + Delta-G solvation = -3411.443380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34478 -39.60755 -38.37430 -37.20530 -35.42863 -34.70555 -32.24352 -32.05880 -30.61123 -27.84197 -27.47742 -27.27654 -25.51624 -23.80758 -22.90088 -21.51826 -20.43745 -18.60558 -18.45367 -17.98504 -17.51669 -17.15069 -16.41434 -16.25808 -16.20332 -15.96669 -15.34914 -15.25718 -14.71898 -14.45690 -14.37149 -14.09622 -13.92463 -13.46828 -13.25635 -13.11658 -13.03969 -12.90237 -12.71077 -12.69748 -12.59537 -12.20524 -12.10635 -11.98367 -11.17109 -11.07791 -10.96824 -10.76856 -10.51309 -9.97226 -9.57185 -9.34019 -8.13854 -6.30397 -0.51285 0.40218 1.16563 1.42484 1.44446 1.55644 1.67803 1.91962 2.26938 2.48021 2.84557 3.14420 3.53978 3.70055 3.86985 3.98911 4.28143 4.37304 4.42016 4.49820 4.51093 4.56808 4.66892 4.70065 4.77453 4.83803 4.88548 4.98636 5.03602 5.09013 5.09438 5.27910 5.36991 5.44220 5.48238 5.62490 5.66622 5.82085 6.02218 6.15528 6.45996 6.75457 6.77228 7.26268 7.44013 8.90931 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038570 B = 0.002917 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.778063 B = 9596.061247 C = 9894.423995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.261 6.261 3 N -0.365 5.365 4 C 0.160 3.840 5 C -0.047 4.047 6 C -0.069 4.069 7 C -0.095 4.095 8 C -0.115 4.115 9 C 0.533 3.467 10 O -0.602 6.602 11 N -0.590 5.590 12 C 0.078 3.922 13 C 0.259 3.741 14 H 0.008 0.992 15 C -0.133 4.133 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.012 3.988 19 N -0.919 5.919 20 Si 0.967 3.033 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.288 1.288 24 C -0.089 4.089 25 C -0.085 4.085 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.122 0.878 29 H 0.157 0.843 30 H 0.181 0.819 31 H 0.153 0.847 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.264 0.736 39 H 0.120 0.880 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 -22.467 -2.226 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 N -0.111 5.111 4 C -0.050 4.050 5 C -0.049 4.049 6 C -0.089 4.089 7 C -0.113 4.113 8 C -0.119 4.119 9 C 0.322 3.678 10 O -0.486 6.486 11 N -0.319 5.319 12 C -0.064 4.064 13 C 0.157 3.843 14 H 0.026 0.974 15 C -0.192 4.192 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.214 1.214 24 C -0.108 4.108 25 C -0.105 4.105 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.174 0.826 30 H 0.198 0.802 31 H 0.170 0.830 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.738 -21.649 -1.934 23.816 hybrid contribution 0.996 0.568 0.405 1.216 sum -8.742 -21.080 -1.529 22.872 Atomic orbital electron populations 1.22941 0.77178 1.04204 1.01285 1.89795 1.23861 1.20107 1.93828 1.76628 1.15034 1.04770 1.14637 1.24463 0.92057 0.97029 0.91407 1.18678 0.93649 0.90078 1.02467 1.21491 0.92959 0.97987 0.96424 1.21695 1.01115 0.90962 0.97561 1.20077 0.95112 0.92404 1.04318 1.19091 0.80452 0.88533 0.79714 1.90708 1.64505 1.49504 1.43838 1.48183 1.28275 1.11506 1.43920 1.22135 0.98397 0.89485 0.96385 1.18619 0.93170 0.78349 0.94140 0.97428 1.21895 0.97586 1.03012 0.96687 1.21586 0.96928 0.94957 1.43829 0.91765 1.25775 1.02793 0.94966 0.95184 1.70035 1.38400 0.99511 1.47845 0.85368 0.79231 0.78407 0.77765 1.18596 1.20009 1.21393 1.21097 0.93062 0.98353 0.98261 1.21319 1.00851 0.90671 0.97618 0.93190 0.93083 0.86012 0.82582 0.80188 0.82956 0.91194 0.89176 0.90839 0.96200 0.91230 0.92993 0.92666 0.86241 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 11.47 113.37 1.30 1.83 16 2 O -0.26 -5.25 11.72 -38.77 -0.45 -5.71 16 3 N -0.36 -7.62 10.45 -52.28 -0.55 -8.16 16 4 C 0.16 2.62 10.90 87.53 0.95 3.58 16 5 C -0.05 -0.87 5.87 -20.09 -0.12 -0.99 16 6 C -0.07 -1.08 9.77 22.49 0.22 -0.86 16 7 C -0.10 -2.14 7.60 22.48 0.17 -1.97 16 8 C -0.12 -3.63 5.16 -20.05 -0.10 -3.73 16 9 C 0.53 23.10 7.32 86.77 0.63 23.73 16 10 O -0.60 -32.32 16.28 -3.89 -0.06 -32.39 16 11 N -0.59 -25.20 2.75 -830.26 -2.29 -27.49 16 12 C 0.08 2.37 8.13 127.77 1.04 3.41 16 13 C 0.26 13.59 2.63 44.24 0.12 13.70 16 14 H 0.01 0.49 6.91 -2.39 -0.02 0.47 16 15 C -0.13 -6.44 8.96 71.98 0.64 -5.79 16 16 C -0.53 -28.86 8.37 25.60 0.21 -28.64 16 17 H 0.06 3.33 7.65 -2.91 -0.02 3.31 16 18 C 0.01 0.66 5.30 84.65 0.45 1.11 16 19 N -0.92 -53.05 11.32 21.45 0.24 -52.80 16 20 Si 0.97 42.74 29.54 68.60 2.03 44.76 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 24 C -0.09 -2.56 9.63 22.48 0.22 -2.34 16 25 C -0.08 -1.93 9.56 22.49 0.21 -1.72 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 31 H 0.15 3.12 5.52 -2.91 -0.02 3.11 16 32 H 0.07 1.87 6.85 -2.39 -0.02 1.86 16 33 H 0.09 2.16 6.00 -2.39 -0.01 2.15 16 34 H 0.07 2.28 6.44 -2.38 -0.02 2.27 16 35 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 37 H 0.05 2.24 6.66 -2.39 -0.02 2.22 16 38 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.14 2.99 7.54 -2.91 -0.02 2.97 16 Total: -1.00 -74.61 338.71 5.92 -68.69 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.05 Total: 11.77 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 5.95 Total: 1.33 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -2.59 Total: -88.45 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.52 Total: -38.09 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -74.61 5.92 -68.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264085493.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.697 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds