Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00145 * 2 1 4 4 O 1.21546 * 119.99743 * 359.97438 * 3 2 1 5 5 C 1.47861 * 119.99762 * 180.02562 * 3 2 1 6 6 C 1.39701 * 120.07672 * 359.97438 * 5 3 2 7 7 C 1.38053 * 120.14586 * 180.02562 * 6 5 3 8 8 C 1.38104 * 120.29415 * 359.72380 * 7 6 5 9 9 C 1.39657 * 120.14631 * 0.55296 * 8 7 6 10 10 C 1.47868 * 120.07814 * 179.71959 * 9 8 7 11 11 O 1.21545 * 120.00269 * 200.40457 * 10 9 8 12 12 N 1.34778 * 119.99670 * 20.39590 * 10 9 8 13 13 C 1.46498 * 119.99973 * 6.95627 * 12 10 9 14 14 C 1.46501 * 120.00079 * 186.94966 * 12 10 9 15 15 H 1.09000 * 109.46841 * 0.02562 * 14 12 10 16 16 C 1.52994 * 109.47121 * 240.00525 * 14 12 10 17 17 C 1.50698 * 109.46905 * 120.00266 * 14 12 10 18 18 H 1.07997 * 120.00054 * 0.02562 * 17 14 12 19 19 C 1.37879 * 119.99820 * 179.72603 * 17 14 12 20 20 N 1.31516 * 119.99834 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00028 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.46890 * 89.99911 * 21 19 17 23 23 H 1.48501 * 109.47274 * 210.00132 * 21 19 17 24 24 H 1.48501 * 109.47008 * 330.00184 * 21 19 17 25 25 C 1.39304 * 120.06904 * 179.97438 * 5 3 2 26 26 H 1.08999 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46696 * 300.00234 * 1 2 3 28 28 H 1.09000 * 109.47092 * 59.99997 * 1 2 3 29 29 H 0.97004 * 120.00107 * 180.02562 * 2 1 3 30 30 H 1.07999 * 119.92672 * 0.04676 * 6 5 3 31 31 H 1.07995 * 119.85645 * 180.02562 * 7 6 5 32 32 H 1.08002 * 119.93091 * 180.29597 * 8 7 6 33 33 H 1.08999 * 109.47408 * 266.33869 * 13 12 10 34 34 H 1.09006 * 109.47608 * 26.33618 * 13 12 10 35 35 H 1.09000 * 109.47474 * 146.33615 * 13 12 10 36 36 H 1.08995 * 109.47579 * 60.00077 * 16 14 12 37 37 H 1.09005 * 109.47016 * 179.97438 * 16 14 12 38 38 H 1.08999 * 109.47325 * 300.00017 * 16 14 12 39 39 H 0.96999 * 119.99845 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.14363 * 0.02562 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6176 1.1671 -0.0006 6 6 4.3176 -0.0419 -0.0006 7 6 5.6981 -0.0436 -0.0006 8 6 6.3963 1.1479 -0.0063 9 6 5.7089 2.3636 -0.0005 10 6 6.4580 3.6385 -0.0004 11 8 5.9168 4.6614 0.3713 12 7 7.7410 3.6662 -0.4124 13 6 8.3469 2.4700 -1.0023 14 6 8.5296 4.8927 -0.2703 15 1 7.9151 5.6690 0.1855 16 6 9.0007 5.3587 -1.6494 17 6 9.7265 4.6217 0.6043 18 1 9.8842 3.6346 1.0131 19 6 10.6236 5.6325 0.8776 20 7 10.4344 6.8332 0.3754 21 14 12.1068 5.2969 1.9624 22 1 13.2456 4.8516 1.1198 23 1 12.4820 6.5383 2.6859 24 1 11.7719 4.2340 2.9439 25 6 4.3156 2.3726 -0.0011 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9501 -0.8401 -0.0004 30 1 3.7776 -0.9771 -0.0009 31 1 6.2346 -0.9809 -0.0010 32 1 7.4763 1.1397 -0.0111 33 1 8.8590 1.9015 -0.2260 34 1 7.5690 1.8524 -1.4515 35 1 9.0635 2.7658 -1.7686 36 1 8.1350 5.5547 -2.2820 37 1 9.5871 6.2715 -1.5437 38 1 9.6152 4.5823 -2.1049 39 1 11.0657 7.5442 0.5673 40 1 3.7792 3.3099 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266143354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -18.550300 kcal Electronic energy + Delta-G solvation = -22721.549566 eV Core-core repulsion = 19309.474772 eV Total energy + Delta-G solvation = -3412.074794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49116 -39.43413 -37.67162 -35.50126 -34.89765 -33.19240 -31.57044 -31.06818 -29.20799 -27.16776 -26.55314 -25.24935 -23.86228 -23.19414 -21.28701 -20.55925 -19.22608 -17.84643 -16.64971 -16.44512 -16.32996 -15.66120 -15.47212 -15.40325 -14.75892 -14.54519 -14.14145 -14.04249 -13.71295 -13.32003 -13.07252 -12.85385 -12.61088 -12.58489 -12.29609 -12.09372 -11.57511 -11.41057 -11.12820 -10.98452 -10.72149 -10.68289 -10.29115 -10.19170 -10.13022 -9.44721 -9.20789 -9.14872 -9.03743 -8.89621 -8.45530 -7.64889 -6.09311 -4.18109 0.65623 1.10448 2.62842 2.92936 3.24737 3.32056 3.34212 3.39880 3.83900 4.02054 4.37383 4.48186 4.62869 4.77128 4.90813 5.03724 5.14523 5.21890 5.22042 5.35227 5.48226 5.53176 5.68726 5.83867 5.91559 6.08036 6.14142 6.16467 6.22219 6.34051 6.69813 6.76303 6.82468 7.03789 7.20332 7.38892 7.48977 7.68481 7.99446 8.00750 8.15639 8.45358 8.78496 8.97224 9.48472 10.95902 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.003435 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.672237 B = 8149.528185 C = 8477.023672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.735 5.735 3 C 0.560 3.440 4 O -0.530 6.530 5 C -0.152 4.152 6 C -0.074 4.074 7 C -0.138 4.138 8 C -0.082 4.082 9 C -0.126 4.126 10 C 0.544 3.456 11 O -0.542 6.542 12 N -0.585 5.585 13 C 0.073 3.927 14 C 0.258 3.742 15 H 0.065 0.935 16 C -0.148 4.148 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.900 3.100 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.005 4.005 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.401 0.599 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.160 0.840 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.013 0.987 37 H 0.095 0.905 38 H 0.030 0.970 39 H 0.264 0.736 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 -19.121 -3.297 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.388 5.388 3 C 0.348 3.652 4 O -0.407 6.407 5 C -0.156 4.156 6 C -0.092 4.092 7 C -0.156 4.156 8 C -0.100 4.100 9 C -0.129 4.129 10 C 0.331 3.669 11 O -0.421 6.421 12 N -0.315 5.315 13 C -0.070 4.070 14 C 0.158 3.842 15 H 0.083 0.917 16 C -0.206 4.206 17 C -0.566 4.566 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.524 5.524 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.025 4.025 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.235 0.765 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.177 0.823 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.024 -17.591 -3.111 21.533 hybrid contribution 1.140 -0.751 0.577 1.482 sum -10.884 -18.341 -2.534 21.478 Atomic orbital electron populations 1.21547 0.79254 1.02186 1.02588 1.45693 1.07834 1.08576 1.76707 1.18310 0.87265 0.83684 0.75933 1.90803 1.69870 1.31115 1.48924 1.19754 0.92499 0.94357 1.08951 1.21354 0.94809 0.96459 0.96627 1.21069 0.93718 0.98399 1.02420 1.22690 1.02778 0.91414 0.93114 1.20265 0.93895 0.94525 1.04227 1.18162 0.82184 0.87583 0.79018 1.90749 1.68236 1.34299 1.48858 1.48145 1.10434 1.14626 1.58319 1.22166 0.98356 0.88303 0.98206 1.19002 0.90129 0.81113 0.93919 0.91730 1.22097 0.98944 1.03032 0.96571 1.21299 1.07693 0.97034 1.30601 0.92232 1.24898 0.98070 0.94893 0.95914 1.69880 1.36788 1.01572 1.44199 0.86475 0.82464 0.77830 0.80501 1.20608 1.21074 1.19913 1.21391 0.92649 0.98242 0.90229 0.90613 0.92061 0.92069 0.76462 0.85752 0.84892 0.82298 0.92468 0.91537 0.90860 0.96817 0.88655 0.95062 0.92611 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.85 0.64 1.27 16 2 N -0.74 -6.37 5.66 -68.04 -0.39 -6.75 16 3 C 0.56 7.42 7.77 -12.32 -0.10 7.33 16 4 O -0.53 -9.25 16.34 5.33 0.09 -9.16 16 5 C -0.15 -1.99 5.87 -105.02 -0.62 -2.61 16 6 C -0.07 -0.70 9.54 -39.10 -0.37 -1.07 16 7 C -0.14 -1.35 10.02 -39.70 -0.40 -1.74 16 8 C -0.08 -1.06 7.61 -39.10 -0.30 -1.35 16 9 C -0.13 -2.12 5.56 -105.02 -0.58 -2.71 16 10 C 0.54 11.78 7.52 -12.32 -0.09 11.69 16 11 O -0.54 -14.00 15.88 5.33 0.08 -13.91 16 12 N -0.58 -12.50 2.75 -176.37 -0.49 -12.98 16 13 C 0.07 1.17 7.92 59.85 0.47 1.64 16 14 C 0.26 6.60 2.64 -69.09 -0.18 6.41 16 15 H 0.06 1.93 6.92 -51.93 -0.36 1.57 16 16 C -0.15 -3.54 8.94 37.15 0.33 -3.21 16 17 C -0.53 -14.09 8.37 -34.44 -0.29 -14.37 16 18 H 0.06 1.54 7.54 -52.49 -0.40 1.15 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.00 11.30 55.43 0.63 -24.38 16 21 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.01 -0.09 9.13 -38.78 -0.35 -0.44 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.40 2.14 6.85 -40.82 -0.28 1.86 16 30 H 0.12 0.68 6.39 -52.49 -0.34 0.34 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.16 1.91 4.02 -52.49 -0.21 1.70 16 33 H 0.06 0.84 6.89 -51.93 -0.36 0.49 16 34 H 0.07 0.87 5.25 -51.93 -0.27 0.59 16 35 H 0.07 1.18 6.44 -51.93 -0.33 0.84 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 2.50 6.05 -51.93 -0.31 2.19 16 38 H 0.03 0.68 6.68 -51.93 -0.35 0.33 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.15 2.70 7.37 -52.49 -0.39 2.31 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -34.67 329.02 -6.91 -41.58 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.84 Total: 2.36 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.93 Total: 2.49 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.24 Total: -44.11 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.17 Total: -23.07 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.67 -6.91 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266143354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.028 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds