Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00145 * 2 1 4 4 O 1.21546 * 119.99743 * 359.97438 * 3 2 1 5 5 C 1.47861 * 119.99762 * 180.02562 * 3 2 1 6 6 C 1.39701 * 120.07672 * 359.97438 * 5 3 2 7 7 C 1.38053 * 120.14586 * 180.02562 * 6 5 3 8 8 C 1.38104 * 120.29415 * 359.72380 * 7 6 5 9 9 C 1.39657 * 120.14631 * 0.55296 * 8 7 6 10 10 C 1.47868 * 120.07814 * 179.71959 * 9 8 7 11 11 O 1.21545 * 120.00269 * 200.40457 * 10 9 8 12 12 N 1.34778 * 119.99670 * 20.39590 * 10 9 8 13 13 C 1.46498 * 119.99973 * 6.95627 * 12 10 9 14 14 C 1.46501 * 120.00079 * 186.94966 * 12 10 9 15 15 H 1.09000 * 109.46841 * 0.02562 * 14 12 10 16 16 C 1.52994 * 109.47121 * 240.00525 * 14 12 10 17 17 C 1.50698 * 109.46905 * 120.00266 * 14 12 10 18 18 H 1.07997 * 120.00054 * 0.02562 * 17 14 12 19 19 C 1.37879 * 119.99820 * 179.72603 * 17 14 12 20 20 N 1.31516 * 119.99834 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00028 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.46890 * 89.99911 * 21 19 17 23 23 H 1.48501 * 109.47274 * 210.00132 * 21 19 17 24 24 H 1.48501 * 109.47008 * 330.00184 * 21 19 17 25 25 C 1.39304 * 120.06904 * 179.97438 * 5 3 2 26 26 H 1.08999 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46696 * 300.00234 * 1 2 3 28 28 H 1.09000 * 109.47092 * 59.99997 * 1 2 3 29 29 H 0.97004 * 120.00107 * 180.02562 * 2 1 3 30 30 H 1.07999 * 119.92672 * 0.04676 * 6 5 3 31 31 H 1.07995 * 119.85645 * 180.02562 * 7 6 5 32 32 H 1.08002 * 119.93091 * 180.29597 * 8 7 6 33 33 H 1.08999 * 109.47408 * 266.33869 * 13 12 10 34 34 H 1.09006 * 109.47608 * 26.33618 * 13 12 10 35 35 H 1.09000 * 109.47474 * 146.33615 * 13 12 10 36 36 H 1.08995 * 109.47579 * 60.00077 * 16 14 12 37 37 H 1.09005 * 109.47016 * 179.97438 * 16 14 12 38 38 H 1.08999 * 109.47325 * 300.00017 * 16 14 12 39 39 H 0.96999 * 119.99845 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.14363 * 0.02562 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6176 1.1671 -0.0006 6 6 4.3176 -0.0419 -0.0006 7 6 5.6981 -0.0436 -0.0006 8 6 6.3963 1.1479 -0.0063 9 6 5.7089 2.3636 -0.0005 10 6 6.4580 3.6385 -0.0004 11 8 5.9168 4.6614 0.3713 12 7 7.7410 3.6662 -0.4124 13 6 8.3469 2.4700 -1.0023 14 6 8.5296 4.8927 -0.2703 15 1 7.9151 5.6690 0.1855 16 6 9.0007 5.3587 -1.6494 17 6 9.7265 4.6217 0.6043 18 1 9.8842 3.6346 1.0131 19 6 10.6236 5.6325 0.8776 20 7 10.4344 6.8332 0.3754 21 14 12.1068 5.2969 1.9624 22 1 13.2456 4.8516 1.1198 23 1 12.4820 6.5383 2.6859 24 1 11.7719 4.2340 2.9439 25 6 4.3156 2.3726 -0.0011 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9501 -0.8401 -0.0004 30 1 3.7776 -0.9771 -0.0009 31 1 6.2346 -0.9809 -0.0010 32 1 7.4763 1.1397 -0.0111 33 1 8.8590 1.9015 -0.2260 34 1 7.5690 1.8524 -1.4515 35 1 9.0635 2.7658 -1.7686 36 1 8.1350 5.5547 -2.2820 37 1 9.5871 6.2715 -1.5437 38 1 9.6152 4.5823 -2.1049 39 1 11.0657 7.5442 0.5673 40 1 3.7792 3.3099 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266143354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -44.369579 kcal Electronic energy + Delta-G solvation = -22722.669174 eV Core-core repulsion = 19309.474772 eV Total energy + Delta-G solvation = -3413.194402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67435 -40.74712 -38.90317 -37.30600 -35.81166 -35.01553 -32.93738 -32.11922 -30.90745 -28.20026 -27.75917 -27.32544 -25.11894 -24.27926 -22.65966 -21.75866 -20.62823 -19.11775 -18.44270 -17.84227 -17.36588 -17.12449 -16.84171 -16.38893 -16.24906 -16.16392 -15.40500 -15.14775 -14.77396 -14.66612 -14.42001 -14.25758 -14.04434 -13.54976 -13.52144 -13.27754 -13.07946 -12.98972 -12.73329 -12.70282 -12.49373 -12.23643 -12.14963 -11.95927 -11.25847 -11.16849 -10.80312 -10.52902 -10.32786 -10.09165 -9.91577 -9.38797 -8.15315 -6.33097 -0.34969 0.00629 1.42195 1.44565 1.54162 1.57710 2.02494 2.08068 2.29051 2.46781 2.83999 3.12795 3.53075 3.63954 3.85921 4.01161 4.10626 4.31472 4.39368 4.44750 4.61911 4.62052 4.63978 4.75657 4.85337 4.89194 4.95518 4.97890 5.01375 5.15912 5.24279 5.28983 5.33872 5.44257 5.57957 5.63797 5.77963 6.00836 6.12248 6.46748 6.71346 6.74691 7.13985 7.23340 7.41488 8.89556 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.003435 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.672237 B = 8149.528185 C = 8477.023672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.710 5.710 3 C 0.553 3.447 4 O -0.588 6.588 5 C -0.158 4.158 6 C -0.044 4.044 7 C -0.115 4.115 8 C -0.078 4.078 9 C -0.150 4.150 10 C 0.531 3.469 11 O -0.607 6.607 12 N -0.590 5.590 13 C 0.067 3.933 14 C 0.261 3.739 15 H 0.004 0.996 16 C -0.134 4.134 17 C -0.538 4.538 18 H 0.068 0.932 19 C 0.012 3.988 20 N -0.920 5.920 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.289 1.289 24 H -0.267 1.267 25 C -0.032 4.032 26 H 0.122 0.878 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.421 0.579 30 H 0.181 0.819 31 H 0.188 0.812 32 H 0.172 0.828 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.015 0.985 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.265 0.735 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 -25.117 -3.364 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.363 5.363 3 C 0.341 3.659 4 O -0.469 6.469 5 C -0.161 4.161 6 C -0.062 4.062 7 C -0.133 4.133 8 C -0.096 4.096 9 C -0.153 4.153 10 C 0.321 3.679 11 O -0.491 6.491 12 N -0.319 5.319 13 C -0.074 4.074 14 C 0.159 3.841 15 H 0.022 0.978 16 C -0.192 4.192 17 C -0.577 4.577 18 H 0.086 0.914 19 C -0.187 4.187 20 N -0.559 5.559 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.215 1.215 24 H -0.192 1.192 25 C -0.052 4.052 26 H 0.140 0.860 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.260 0.740 30 H 0.198 0.802 31 H 0.205 0.795 32 H 0.189 0.811 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.147 -23.700 -3.205 26.386 hybrid contribution 0.749 1.014 0.587 1.391 sum -10.398 -22.685 -2.618 25.092 Atomic orbital electron populations 1.21755 0.78064 1.04820 1.01483 1.45547 1.08601 1.07909 1.74258 1.18509 0.87528 0.84187 0.75643 1.90783 1.70843 1.33461 1.51845 1.19815 0.92560 0.94513 1.09199 1.21947 0.95136 0.96678 0.92486 1.21643 0.93736 0.98849 0.99041 1.22846 1.03457 0.90800 0.92485 1.19823 0.93546 0.93539 1.08403 1.19062 0.82269 0.88899 0.77689 1.90695 1.69604 1.37153 1.51672 1.48116 1.10337 1.15035 1.58419 1.22537 0.99440 0.86706 0.98756 1.18601 0.89363 0.81891 0.94238 0.97847 1.21894 0.98857 1.02520 0.95973 1.21566 1.07775 0.97458 1.30854 0.91381 1.25816 1.01138 0.94560 0.97215 1.70043 1.37872 1.02536 1.45445 0.85369 0.78950 0.77491 0.78680 1.18968 1.21499 1.19174 1.21135 0.92782 0.98330 0.92986 0.85985 0.93340 0.93186 0.73985 0.80177 0.79476 0.81077 0.90355 0.88010 0.90842 0.96620 0.91164 0.92746 0.92628 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.70 127.77 1.37 2.33 16 2 N -0.71 -10.02 5.66 -487.45 -2.76 -12.78 16 3 C 0.55 14.29 7.77 86.79 0.67 14.97 16 4 O -0.59 -21.74 16.34 -3.86 -0.06 -21.80 16 5 C -0.16 -3.89 5.87 -20.12 -0.12 -4.01 16 6 C -0.04 -0.58 9.54 22.58 0.22 -0.37 16 7 C -0.12 -1.50 10.02 22.19 0.22 -1.28 16 8 C -0.08 -1.75 7.61 22.58 0.17 -1.57 16 9 C -0.15 -5.15 5.56 -20.12 -0.11 -5.26 16 10 C 0.53 24.61 7.52 86.79 0.65 25.26 16 11 O -0.61 -34.91 15.88 -3.86 -0.06 -34.97 16 12 N -0.59 -26.04 2.75 -830.20 -2.29 -28.32 16 13 C 0.07 2.01 7.92 127.77 1.01 3.02 16 14 C 0.26 14.05 2.64 44.24 0.12 14.17 16 15 H 0.00 0.23 6.92 -2.39 -0.02 0.21 16 16 C -0.13 -6.67 8.94 71.98 0.64 -6.03 16 17 C -0.54 -29.28 8.37 25.60 0.21 -29.06 16 18 H 0.07 3.49 7.54 -2.91 -0.02 3.47 16 19 C 0.01 0.67 5.30 84.66 0.45 1.12 16 20 N -0.92 -53.88 11.30 21.45 0.24 -53.64 16 21 Si 0.97 42.76 29.54 68.60 2.03 44.78 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 C -0.03 -1.11 9.13 22.79 0.21 -0.90 16 26 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.42 2.11 6.85 -92.71 -0.64 1.48 16 30 H 0.18 0.42 6.39 -2.91 -0.02 0.40 16 31 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 32 H 0.17 3.39 4.02 -2.91 -0.01 3.38 16 33 H 0.08 2.05 6.89 -2.39 -0.02 2.04 16 34 H 0.10 2.35 5.25 -2.38 -0.01 2.33 16 35 H 0.07 2.21 6.44 -2.39 -0.02 2.20 16 36 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 3.86 6.05 -2.38 -0.01 3.85 16 38 H 0.05 2.39 6.68 -2.39 -0.02 2.38 16 39 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.10 4.32 7.37 -2.91 -0.02 4.30 16 Total: -1.00 -87.71 329.02 3.26 -84.44 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.45 Total: 9.91 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.72 Total: 12.38 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -4.80 Total: -94.74 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -0.12 Total: -56.77 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -87.71 3.26 -84.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266143354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.072 kcal (2) G-P(sol) polarization free energy of solvation -87.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds