Wall clock time and date at job start Tue Mar 31 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.99744 * 2 1 4 4 C 1.54322 * 109.88741 * 121.09438 * 2 1 3 5 5 C 1.55161 * 102.94307 * 97.22547 * 4 2 1 6 6 C 1.54910 * 101.61480 * 35.48412 * 5 4 2 7 7 N 1.47019 * 109.88431 * 238.90604 * 2 1 3 8 8 C 1.34781 * 125.64709 * 59.47977 * 7 2 1 9 9 O 1.21584 * 119.99978 * 0.02562 * 8 7 2 10 10 N 1.34778 * 119.99831 * 180.02562 * 8 7 2 11 11 C 1.39945 * 119.99693 * 175.48213 * 10 8 7 12 12 C 1.38959 * 120.03314 * 214.85316 * 11 10 8 13 13 C 1.38160 * 120.06538 * 179.79031 * 12 11 10 14 14 C 1.38174 * 120.14037 * 0.47016 * 13 12 11 15 15 C 1.38906 * 120.06449 * 359.78036 * 14 13 12 16 16 O 1.35756 * 120.03298 * 179.97438 * 15 14 13 17 17 C 1.34838 * 116.99806 * 5.37138 * 16 15 14 18 18 H 1.07998 * 119.99748 * 354.96484 * 17 16 15 19 19 C 1.38653 * 119.99608 * 174.96251 * 17 16 15 20 20 N 1.31556 * 119.99470 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00234 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47702 * 89.99886 * 21 19 17 23 23 H 1.48510 * 109.47026 * 209.99786 * 21 19 17 24 24 H 1.48503 * 109.47218 * 329.99344 * 21 19 17 25 25 C 1.38709 * 120.03843 * 35.13214 * 11 10 8 26 26 H 1.09004 * 109.46707 * 298.90032 * 1 2 3 27 27 H 1.08991 * 109.47558 * 58.90110 * 1 2 3 28 28 H 1.09007 * 109.46753 * 178.90574 * 1 2 3 29 29 H 1.08996 * 110.72030 * 338.86663 * 4 2 1 30 30 H 1.09003 * 110.72294 * 215.58882 * 4 2 1 31 31 H 1.08996 * 111.00768 * 153.58118 * 5 4 2 32 32 H 1.08998 * 111.00144 * 277.39548 * 5 4 2 33 33 H 1.08999 * 110.36981 * 81.84759 * 6 5 4 34 34 H 1.08996 * 110.36828 * 204.17369 * 6 5 4 35 35 H 0.96998 * 120.00305 * 355.48398 * 10 8 7 36 36 H 1.07995 * 119.97014 * 359.97438 * 12 11 10 37 37 H 1.07994 * 119.93537 * 180.22858 * 13 12 11 38 38 H 1.07995 * 119.97018 * 179.76815 * 14 13 12 39 39 H 0.96996 * 119.99926 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.06396 * 359.94879 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 6 2.3520 -2.1695 0.6924 6 6 2.8565 -1.8507 -0.7372 7 7 2.0300 -0.7140 -1.1839 8 6 1.7741 -0.3852 -2.4657 9 8 1.0750 0.5768 -2.7186 10 7 2.2932 -1.1229 -3.4671 11 6 1.9518 -0.8397 -4.7944 12 6 1.8287 -1.8721 -5.7163 13 6 1.4875 -1.5937 -7.0258 14 6 1.2770 -0.2878 -7.4253 15 6 1.4036 0.7490 -6.5096 16 8 1.1971 2.0319 -6.9029 17 6 0.7640 2.2228 -8.1655 18 1 0.6748 1.3830 -8.8386 19 6 0.4331 3.4975 -8.5994 20 7 0.0100 3.6837 -9.8311 21 14 0.5880 4.9500 -7.4354 22 1 1.9488 5.5336 -7.5501 23 1 -0.4230 5.9785 -7.7898 24 1 0.3613 4.4931 -6.0407 25 6 1.7415 0.4723 -5.1925 26 1 -0.3633 0.4967 0.8997 27 1 -0.3634 0.5307 -0.8799 28 1 -0.3633 -1.0276 -0.0196 29 1 1.2919 -0.7891 2.0200 30 1 2.9657 -0.2831 1.6182 31 1 3.1271 -2.6618 1.2795 32 1 1.4454 -2.7738 0.6610 33 1 3.9089 -1.5679 -0.7138 34 1 2.7079 -2.7092 -1.3921 35 1 2.9034 -1.8501 -3.2679 36 1 1.9971 -2.8934 -5.4083 37 1 1.3888 -2.3980 -7.7397 38 1 1.0140 -0.0730 -8.4505 39 1 -0.2212 4.5754 -10.1349 40 1 1.8402 1.2767 -4.4786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267780567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:01 Heat of formation + Delta-G solvation = -17.935109 kcal Electronic energy + Delta-G solvation = -22850.099394 eV Core-core repulsion = 19438.051276 eV Total energy + Delta-G solvation = -3412.048118 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68743 -39.14525 -37.98307 -36.44640 -34.20502 -32.31446 -31.90113 -31.30223 -29.51470 -28.30668 -26.10184 -25.16126 -23.66962 -22.24391 -21.50218 -20.70484 -19.59032 -18.32858 -17.90322 -17.30403 -16.32364 -15.82664 -15.16636 -15.06212 -15.00599 -14.37293 -13.96979 -13.79991 -13.63969 -13.53469 -13.22694 -12.86445 -12.76854 -12.54056 -12.28422 -12.22029 -12.16210 -11.63264 -11.50290 -11.13393 -10.99916 -10.96690 -10.89452 -10.79434 -10.17741 -9.88888 -9.65092 -9.24834 -8.80643 -8.76838 -7.71216 -7.24633 -6.34749 -4.01024 2.05188 2.29566 2.52898 3.27366 3.32361 3.32858 3.51886 3.84893 4.20040 4.30456 4.32900 4.55708 4.58932 4.86342 4.96483 5.01158 5.13757 5.18954 5.28174 5.33943 5.42084 5.55104 5.58885 5.61722 5.74461 5.77900 5.91526 6.05993 6.12481 6.20016 6.30473 6.37761 6.54728 6.82402 6.99822 7.16706 7.20823 7.39557 7.66858 7.87704 7.97537 8.10570 8.66261 9.01166 9.65188 10.72820 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.003980 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.192992 B = 7032.613942 C = 8092.533232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 H 0.074 0.926 4 C -0.129 4.129 5 C -0.130 4.130 6 C 0.096 3.904 7 N -0.635 5.635 8 C 0.718 3.282 9 O -0.557 6.557 10 N -0.680 5.680 11 C 0.191 3.809 12 C -0.229 4.229 13 C -0.060 4.060 14 C -0.234 4.234 15 C 0.174 3.826 16 O -0.215 6.215 17 C -0.388 4.388 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.881 5.881 21 Si 0.902 3.098 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.257 1.257 25 C -0.186 4.186 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -13.333 20.853 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.168 4.168 6 C -0.027 4.027 7 N -0.375 5.375 8 C 0.420 3.580 9 O -0.432 6.432 10 N -0.328 5.328 11 C 0.098 3.902 12 C -0.250 4.250 13 C -0.078 4.078 14 C -0.253 4.253 15 C 0.121 3.879 16 O -0.119 6.119 17 C -0.463 4.463 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.519 5.519 21 Si 0.728 3.272 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.181 1.181 25 C -0.208 4.208 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.236 0.764 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.575 -12.195 20.580 24.563 hybrid contribution 0.331 0.117 0.309 0.467 sum 5.905 -12.078 20.889 24.841 Atomic orbital electron populations 1.22178 0.94682 1.02236 1.03198 1.21374 0.94753 0.95963 0.83024 0.90747 1.22730 1.01903 0.95387 0.96657 1.22734 1.01996 0.97149 0.94957 1.22317 0.95134 0.89204 0.96092 1.47715 1.54090 1.31882 1.03765 1.15450 0.80466 0.82832 0.79223 1.90990 1.42047 1.28466 1.81728 1.42495 1.49619 1.36525 1.04128 1.16940 0.99152 0.92808 0.81350 1.20302 1.13847 0.96618 0.94231 1.20532 0.96852 0.95839 0.94624 1.21290 1.10474 0.92388 1.01195 1.18870 0.92632 0.84544 0.91870 1.83589 1.74478 1.21591 1.32271 1.20790 1.43909 0.96876 0.84740 0.87540 1.24444 0.95277 0.97958 0.96224 1.69647 1.42725 1.23856 1.15704 0.86216 0.78168 0.80771 0.82077 1.19905 1.20824 1.18081 1.20197 1.10670 0.95710 0.94212 0.91924 0.90555 0.92740 0.89761 0.90513 0.89842 0.90504 0.91360 0.90953 0.76432 0.87325 0.86765 0.84863 0.91122 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.05 37.15 0.34 -1.49 16 2 C 0.15 1.59 3.50 -66.96 -0.23 1.35 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -0.83 6.49 -24.89 -0.16 -0.99 16 5 C -0.13 -0.73 7.08 -24.58 -0.17 -0.91 16 6 C 0.10 0.72 6.54 -2.50 -0.02 0.70 16 7 N -0.63 -7.51 3.08 -168.66 -0.52 -8.03 16 8 C 0.72 11.68 8.11 -86.91 -0.71 10.98 16 9 O -0.56 -11.67 12.68 5.29 0.07 -11.60 16 10 N -0.68 -10.16 5.29 -14.24 -0.08 -10.24 16 11 C 0.19 3.57 6.30 -83.71 -0.53 3.05 16 12 C -0.23 -3.89 9.96 -39.34 -0.39 -4.28 16 13 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 14 C -0.23 -5.22 9.17 -39.36 -0.36 -5.58 16 15 C 0.17 4.31 6.64 -39.14 -0.26 4.05 16 16 O -0.21 -6.04 8.58 0.01 0.00 -6.04 16 17 C -0.39 -11.36 9.95 30.89 0.31 -11.05 16 18 H 0.11 3.14 5.43 -52.49 -0.29 2.86 16 19 C 0.06 1.86 5.49 -17.52 -0.10 1.77 16 20 N -0.88 -26.16 13.96 55.48 0.77 -25.38 16 21 Si 0.90 22.81 28.61 -169.99 -4.86 17.94 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.26 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.19 -4.23 8.64 -39.21 -0.34 -4.57 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.13 6.76 -51.93 -0.35 0.78 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.45 7.83 -51.93 -0.41 0.04 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.47 7.37 -51.93 -0.38 0.08 16 35 H 0.40 4.39 7.35 -40.82 -0.30 4.09 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.13 3.09 5.63 -52.49 -0.30 2.79 16 39 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.14 3.26 6.22 -52.49 -0.33 2.94 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -34.05 328.51 -7.97 -42.02 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.29 Total: 4.84 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.02 Total: -8.46 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.18 Total: -43.65 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.07 Total: -17.64 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.86 Total: 17.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.05 -7.97 -42.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267780567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.087 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds