Wall clock time and date at job start Tue Mar 31 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.99744 * 2 1 4 4 C 1.54322 * 109.88741 * 121.09438 * 2 1 3 5 5 C 1.55161 * 102.94307 * 97.22547 * 4 2 1 6 6 C 1.54910 * 101.61480 * 35.48412 * 5 4 2 7 7 N 1.47019 * 109.88431 * 238.90604 * 2 1 3 8 8 C 1.34781 * 125.64709 * 59.47977 * 7 2 1 9 9 O 1.21584 * 119.99978 * 0.02562 * 8 7 2 10 10 N 1.34778 * 119.99831 * 180.02562 * 8 7 2 11 11 C 1.39945 * 119.99693 * 175.48213 * 10 8 7 12 12 C 1.38959 * 120.03314 * 214.85316 * 11 10 8 13 13 C 1.38160 * 120.06538 * 179.79031 * 12 11 10 14 14 C 1.38174 * 120.14037 * 0.47016 * 13 12 11 15 15 C 1.38906 * 120.06449 * 359.78036 * 14 13 12 16 16 O 1.35756 * 120.03298 * 179.97438 * 15 14 13 17 17 C 1.34838 * 116.99806 * 5.37138 * 16 15 14 18 18 H 1.07998 * 119.99748 * 354.96484 * 17 16 15 19 19 C 1.38653 * 119.99608 * 174.96251 * 17 16 15 20 20 N 1.31556 * 119.99470 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00234 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47702 * 89.99886 * 21 19 17 23 23 H 1.48510 * 109.47026 * 209.99786 * 21 19 17 24 24 H 1.48503 * 109.47218 * 329.99344 * 21 19 17 25 25 C 1.38709 * 120.03843 * 35.13214 * 11 10 8 26 26 H 1.09004 * 109.46707 * 298.90032 * 1 2 3 27 27 H 1.08991 * 109.47558 * 58.90110 * 1 2 3 28 28 H 1.09007 * 109.46753 * 178.90574 * 1 2 3 29 29 H 1.08996 * 110.72030 * 338.86663 * 4 2 1 30 30 H 1.09003 * 110.72294 * 215.58882 * 4 2 1 31 31 H 1.08996 * 111.00768 * 153.58118 * 5 4 2 32 32 H 1.08998 * 111.00144 * 277.39548 * 5 4 2 33 33 H 1.08999 * 110.36981 * 81.84759 * 6 5 4 34 34 H 1.08996 * 110.36828 * 204.17369 * 6 5 4 35 35 H 0.96998 * 120.00305 * 355.48398 * 10 8 7 36 36 H 1.07995 * 119.97014 * 359.97438 * 12 11 10 37 37 H 1.07994 * 119.93537 * 180.22858 * 13 12 11 38 38 H 1.07995 * 119.97018 * 179.76815 * 14 13 12 39 39 H 0.96996 * 119.99926 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.06396 * 359.94879 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 6 2.3520 -2.1695 0.6924 6 6 2.8565 -1.8507 -0.7372 7 7 2.0300 -0.7140 -1.1839 8 6 1.7741 -0.3852 -2.4657 9 8 1.0750 0.5768 -2.7186 10 7 2.2932 -1.1229 -3.4671 11 6 1.9518 -0.8397 -4.7944 12 6 1.8287 -1.8721 -5.7163 13 6 1.4875 -1.5937 -7.0258 14 6 1.2770 -0.2878 -7.4253 15 6 1.4036 0.7490 -6.5096 16 8 1.1971 2.0319 -6.9029 17 6 0.7640 2.2228 -8.1655 18 1 0.6748 1.3830 -8.8386 19 6 0.4331 3.4975 -8.5994 20 7 0.0100 3.6837 -9.8311 21 14 0.5880 4.9500 -7.4354 22 1 1.9488 5.5336 -7.5501 23 1 -0.4230 5.9785 -7.7898 24 1 0.3613 4.4931 -6.0407 25 6 1.7415 0.4723 -5.1925 26 1 -0.3633 0.4967 0.8997 27 1 -0.3634 0.5307 -0.8799 28 1 -0.3633 -1.0276 -0.0196 29 1 1.2919 -0.7891 2.0200 30 1 2.9657 -0.2831 1.6182 31 1 3.1271 -2.6618 1.2795 32 1 1.4454 -2.7738 0.6610 33 1 3.9089 -1.5679 -0.7138 34 1 2.7079 -2.7092 -1.3921 35 1 2.9034 -1.8501 -3.2679 36 1 1.9971 -2.8934 -5.4083 37 1 1.3888 -2.3980 -7.7397 38 1 1.0140 -0.0730 -8.4505 39 1 -0.2212 4.5754 -10.1349 40 1 1.8402 1.2767 -4.4786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267780567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:01 Heat of formation + Delta-G solvation = -40.921472 kcal Electronic energy + Delta-G solvation = -22851.096157 eV Core-core repulsion = 19438.051276 eV Total energy + Delta-G solvation = -3413.044881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.89564 -40.74126 -39.24813 -38.00592 -35.65233 -34.45677 -32.90557 -32.02858 -31.21006 -29.81923 -27.24269 -26.82062 -24.82910 -23.55198 -22.90497 -21.78181 -20.75864 -19.84967 -19.55305 -18.88166 -17.30527 -17.14333 -16.87263 -16.55135 -16.19697 -15.90343 -15.68412 -15.56753 -14.75935 -14.53729 -14.33676 -14.24248 -14.17448 -13.99120 -13.55060 -13.40581 -13.16937 -12.98823 -12.90468 -12.74386 -12.51959 -12.10135 -12.03753 -11.70614 -11.56050 -11.49686 -11.35019 -10.95863 -10.87536 -9.80022 -9.35715 -8.89961 -8.52591 -6.24185 0.42676 0.64418 1.25413 1.29641 1.41719 1.48065 2.00947 2.25595 2.72761 2.80522 3.08445 3.21034 3.64521 3.66564 4.02086 4.11521 4.22468 4.34396 4.34513 4.38921 4.46971 4.60784 4.61765 4.67977 4.71023 4.86398 4.91177 4.96873 5.05597 5.13587 5.24042 5.28772 5.34764 5.39761 5.43900 5.51479 5.67193 5.78326 5.90175 5.99378 6.22424 6.82476 6.84749 7.44466 7.59680 8.59017 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.003980 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.192992 B = 7032.613942 C = 8092.533232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.055 0.945 4 C -0.117 4.117 5 C -0.121 4.121 6 C 0.084 3.916 7 N -0.629 5.629 8 C 0.708 3.292 9 O -0.614 6.614 10 N -0.664 5.664 11 C 0.200 3.800 12 C -0.195 4.195 13 C -0.050 4.050 14 C -0.249 4.249 15 C 0.135 3.865 16 O -0.251 6.251 17 C -0.398 4.398 18 H 0.089 0.911 19 C 0.015 3.985 20 N -0.919 5.919 21 Si 0.962 3.038 22 H -0.262 1.262 23 H -0.261 1.261 24 H -0.278 1.278 25 C -0.204 4.204 26 H 0.084 0.916 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.424 0.576 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.115 0.885 39 H 0.285 0.715 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 -16.925 23.826 30.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.073 0.927 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.037 4.037 7 N -0.367 5.367 8 C 0.410 3.590 9 O -0.494 6.494 10 N -0.314 5.314 11 C 0.104 3.896 12 C -0.215 4.215 13 C -0.068 4.068 14 C -0.269 4.269 15 C 0.085 3.915 16 O -0.158 6.158 17 C -0.474 4.474 18 H 0.107 0.893 19 C -0.183 4.183 20 N -0.560 5.560 21 Si 0.785 3.215 22 H -0.187 1.187 23 H -0.186 1.186 24 H -0.203 1.203 25 C -0.226 4.226 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.264 0.736 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.141 -15.873 23.622 29.342 hybrid contribution -0.065 0.906 -0.395 0.991 sum 7.076 -14.967 23.227 28.523 Atomic orbital electron populations 1.22112 0.95466 1.02123 1.02028 1.21621 0.94293 0.95924 0.84467 0.92723 1.22715 1.02775 0.95379 0.94656 1.22763 1.02954 0.96505 0.93642 1.22728 0.95259 0.87995 0.97698 1.47803 1.53618 1.32895 1.02381 1.15744 0.80217 0.82291 0.80708 1.90972 1.44513 1.30948 1.82934 1.42267 1.49783 1.36941 1.02424 1.17086 0.97489 0.91602 0.83378 1.20883 1.09360 0.98504 0.92776 1.21015 0.94718 0.94846 0.96218 1.21352 1.11499 0.93973 1.00052 1.19361 0.94516 0.84253 0.93339 1.83537 1.76955 1.23784 1.31555 1.20792 1.44389 0.96837 0.85404 0.89325 1.25148 0.95314 1.00191 0.97687 1.69706 1.44553 1.24803 1.16924 0.85354 0.79131 0.78250 0.78786 1.18702 1.18564 1.20326 1.20211 1.12166 0.97301 0.92941 0.89753 0.95208 0.92043 0.88145 0.89177 0.86876 0.90394 0.89785 0.89281 0.73611 0.81708 0.82392 0.86711 0.90506 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.05 71.98 0.65 -2.84 16 2 C 0.14 2.76 3.50 45.34 0.16 2.92 16 3 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.12 -1.08 6.49 31.78 0.21 -0.88 16 5 C -0.12 -0.78 7.08 31.99 0.23 -0.56 16 6 C 0.08 0.92 6.54 86.85 0.57 1.49 16 7 N -0.63 -13.82 3.08 -805.78 -2.48 -16.30 16 8 C 0.71 22.73 8.11 179.05 1.45 24.18 16 9 O -0.61 -27.02 12.68 -3.98 -0.05 -27.07 16 10 N -0.66 -18.29 5.29 -317.22 -1.68 -19.97 16 11 C 0.20 7.13 6.30 38.13 0.24 7.37 16 12 C -0.19 -5.75 9.96 22.42 0.22 -5.53 16 13 C -0.05 -1.67 10.03 22.24 0.22 -1.44 16 14 C -0.25 -11.36 9.17 22.41 0.21 -11.15 16 15 C 0.13 7.04 6.64 22.56 0.15 7.19 16 16 O -0.25 -15.11 8.58 -22.89 -0.20 -15.31 16 17 C -0.40 -24.87 9.95 67.92 0.68 -24.19 16 18 H 0.09 5.65 5.43 -2.91 -0.02 5.63 16 19 C 0.02 0.93 5.49 84.83 0.47 1.40 16 20 N -0.92 -56.80 13.96 21.61 0.30 -56.50 16 21 Si 0.96 49.30 28.61 68.60 1.96 51.26 16 22 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.28 -15.04 7.11 99.48 0.71 -14.33 16 25 C -0.20 -9.61 8.64 22.51 0.19 -9.42 16 26 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.03 0.93 6.76 -2.39 -0.02 0.91 16 28 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.10 0.66 7.83 -2.39 -0.02 0.65 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.70 7.37 -2.39 -0.02 0.68 16 35 H 0.42 7.45 7.35 -92.71 -0.68 6.77 16 36 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.12 5.62 5.63 -2.91 -0.02 5.60 16 39 H 0.29 16.15 8.31 -92.71 -0.77 15.38 16 40 H 0.11 5.67 6.22 -2.91 -0.02 5.66 16 Total: -1.00 -82.99 328.51 3.88 -79.11 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.38 Total: 16.25 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.64 Total: -11.46 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -3.86 Total: -92.77 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.25 Total: -42.38 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.96 Total: 51.26 kcal Total: -82.99 3.88 -79.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267780567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.186 kcal (2) G-P(sol) polarization free energy of solvation -82.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds