Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47148 * 2 1 4 4 O 1.42903 * 109.47065 * 119.99887 * 2 1 3 5 5 C 1.35683 * 116.99714 * 90.00153 * 4 2 1 6 6 C 1.38846 * 119.61587 * 180.02562 * 5 4 2 7 7 C 1.39672 * 118.93673 * 180.02562 * 6 5 4 8 8 C 1.48008 * 120.89926 * 179.97438 * 7 6 5 9 9 O 1.21559 * 119.99903 * 219.37488 * 8 7 6 10 10 N 1.34779 * 119.99979 * 39.37250 * 8 7 6 11 11 C 1.36793 * 120.00029 * 176.94237 * 10 8 7 12 12 H 1.07998 * 119.99898 * 328.09800 * 11 10 8 13 13 C 1.39103 * 120.00010 * 148.09762 * 11 10 8 14 14 N 1.31332 * 119.99985 * 359.82842 * 13 11 10 15 15 Si 1.86799 * 119.99967 * 179.82804 * 13 11 10 16 16 H 1.48497 * 109.47014 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47061 * 299.99988 * 15 13 11 18 18 H 1.48503 * 109.47278 * 60.00300 * 15 13 11 19 19 C 1.46497 * 119.99826 * 356.94558 * 10 8 7 20 20 C 1.52998 * 117.49764 * 134.05727 * 19 10 8 21 21 C 1.53002 * 60.00089 * 252.50770 * 20 19 10 22 22 C 1.40060 * 118.20128 * 0.24340 * 7 6 5 23 23 C 1.37932 * 119.12594 * 359.53052 * 22 7 6 24 24 N 1.31938 * 120.98296 * 0.48304 * 23 22 7 25 25 H 1.09000 * 109.46911 * 60.00135 * 1 2 3 26 26 H 1.09001 * 109.46902 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47017 * 300.00482 * 1 2 3 28 28 H 1.09001 * 109.46751 * 240.00167 * 2 1 3 29 29 H 1.08996 * 109.47390 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46747 * 300.00149 * 3 2 1 31 31 H 1.08997 * 109.47180 * 59.99477 * 3 2 1 32 32 H 1.08002 * 120.53507 * 359.97271 * 6 5 4 33 33 H 0.96992 * 120.00047 * 175.01440 * 14 13 11 34 34 H 1.08996 * 115.55179 * 279.76437 * 19 10 8 35 35 H 1.08997 * 117.49983 * 359.97438 * 20 19 10 36 36 H 1.09008 * 117.49744 * 145.02182 * 20 19 10 37 37 H 1.09000 * 117.49952 * 252.51191 * 21 20 19 38 38 H 1.08996 * 117.51588 * 107.48459 * 21 20 19 39 39 H 1.07997 * 120.43379 * 179.74619 * 22 7 6 40 40 H 1.07997 * 119.51092 * 180.22959 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2117 -2.0110 1.0652 6 6 2.6735 -2.7198 2.1662 7 6 2.8805 -4.0959 2.0457 8 6 3.3723 -4.8937 3.1912 9 8 4.1826 -5.7816 3.0102 10 7 2.9217 -4.6358 4.4350 11 6 3.3282 -5.4132 5.4846 12 1 3.5482 -6.4589 5.3286 13 6 3.4581 -4.8568 6.7529 14 7 3.1938 -3.5843 6.9419 15 14 4.0085 -5.9195 8.1871 16 1 4.0678 -5.0944 9.4204 17 1 3.0418 -7.0300 8.3799 18 1 5.3542 -6.4786 7.9012 19 6 1.9967 -3.5229 4.6628 20 6 0.7744 -3.7893 5.5436 21 6 0.6059 -3.6199 4.0324 22 6 2.6155 -4.6993 0.8098 23 6 2.1544 -3.9217 -0.2319 24 7 1.9705 -2.6239 -0.0810 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 2.8704 -2.2152 3.1005 33 1 3.2140 -3.2126 7.8375 34 1 2.4545 -2.5356 4.7221 35 1 0.6583 -4.7927 5.9533 36 1 0.4280 -2.9771 6.1828 37 1 0.1488 -2.6963 3.6774 38 1 0.3793 -4.5115 3.4479 39 1 2.7669 -5.7601 0.6754 40 1 1.9445 -4.3812 -1.1864 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268449838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = 3.768552 kcal Electronic energy + Delta-G solvation = -23650.673860 eV Core-core repulsion = 20239.566884 eV Total energy + Delta-G solvation = -3411.106976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47231 -38.93352 -37.63126 -36.13606 -33.19597 -33.17783 -32.07925 -31.07589 -29.77092 -27.30221 -25.73345 -23.99437 -22.95229 -21.94572 -21.36546 -21.09722 -19.57911 -17.74612 -17.03483 -16.37115 -15.92941 -15.48783 -15.45767 -15.18292 -14.48066 -14.15615 -13.99743 -13.97153 -13.66235 -13.18218 -12.95167 -12.79245 -12.35770 -12.24677 -12.09172 -11.89041 -11.60612 -11.25900 -11.13776 -10.90167 -10.75192 -10.68106 -10.60283 -10.42283 -9.89515 -9.53687 -9.44066 -9.19047 -8.90061 -8.47451 -8.14856 -7.76791 -6.37186 -4.03532 1.36797 1.55519 3.15044 3.18955 3.21356 3.25278 3.73691 4.02084 4.28967 4.51685 4.63103 4.71869 4.86215 4.97064 5.07163 5.21667 5.32207 5.36085 5.47052 5.47790 5.55780 5.68559 5.78130 5.79646 5.85355 5.93728 6.04549 6.09621 6.12980 6.16534 6.30072 6.33104 6.65580 6.73433 6.76695 6.93839 7.12562 7.45911 7.54797 8.04605 8.13205 8.37876 9.05591 9.25404 9.83603 10.64650 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.004853 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.234941 B = 5768.071521 C = 6404.324457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.082 3.918 3 C -0.151 4.151 4 O -0.302 6.302 5 C 0.314 3.686 6 C -0.159 4.159 7 C -0.012 4.012 8 C 0.485 3.515 9 O -0.574 6.574 10 N -0.400 5.400 11 C -0.312 4.312 12 H 0.096 0.904 13 C 0.044 3.956 14 N -0.863 5.863 15 Si 0.926 3.074 16 H -0.283 1.283 17 H -0.273 1.273 18 H -0.271 1.271 19 C 0.125 3.875 20 C -0.134 4.134 21 C -0.218 4.218 22 C -0.173 4.173 23 C 0.125 3.875 24 N -0.543 5.543 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.150 0.850 33 H 0.271 0.729 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 7.331 -10.004 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.025 3.975 3 C -0.208 4.208 4 O -0.210 6.210 5 C 0.135 3.865 6 C -0.180 4.180 7 C -0.023 4.023 8 C 0.273 3.727 9 O -0.459 6.459 10 N -0.117 5.117 11 C -0.440 4.440 12 H 0.114 0.886 13 C -0.162 4.162 14 N -0.499 5.499 15 Si 0.752 3.248 16 H -0.208 1.208 17 H -0.198 1.198 18 H -0.196 1.196 19 C 0.020 3.980 20 C -0.171 4.171 21 C -0.257 4.257 22 C -0.195 4.195 23 C -0.030 4.030 24 N -0.268 5.268 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.167 0.833 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.156 0.844 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.343 7.735 -10.350 14.394 hybrid contribution 0.341 -0.842 1.342 1.621 sum -6.002 6.892 -9.009 12.833 Atomic orbital electron populations 1.22205 0.95205 1.02865 1.02202 1.22252 0.94184 0.92606 0.88425 1.21900 1.01980 0.94209 1.02685 1.86310 1.80461 1.16147 1.38080 1.19594 0.92885 0.84327 0.89684 1.21540 1.03717 0.93560 0.99196 1.20504 0.93521 0.92904 0.95355 1.17846 0.85028 0.86977 0.82838 1.90636 1.36183 1.34800 1.84288 1.42963 1.36703 1.26575 1.05431 1.19502 1.44263 0.93590 0.86603 0.88600 1.25415 0.95843 0.95672 0.99287 1.69834 1.45575 1.11557 1.22940 0.86005 0.79771 0.79387 0.79618 1.20816 1.19842 1.19606 1.21260 0.83353 0.91460 1.01948 1.22706 1.01197 1.02316 0.90900 1.23530 1.02496 1.01980 0.97657 1.22015 1.02652 1.01943 0.92878 1.22163 0.94748 0.87621 0.98444 1.67020 1.22317 1.12835 1.24611 0.91522 0.91931 0.92071 0.89473 0.91889 0.90839 0.91674 0.83262 0.91906 0.87411 0.89175 0.89645 0.89608 0.90047 0.84374 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 9.53 37.16 0.35 -1.47 16 2 C 0.08 1.01 3.11 -26.73 -0.08 0.93 16 3 C -0.15 -1.47 9.56 37.16 0.36 -1.12 16 4 O -0.30 -4.76 9.76 -18.75 -0.18 -4.95 16 5 C 0.31 5.37 7.45 -17.17 -0.13 5.24 16 6 C -0.16 -3.00 7.41 -38.82 -0.29 -3.29 16 7 C -0.01 -0.24 4.90 -104.67 -0.51 -0.75 16 8 C 0.48 12.06 7.30 -12.25 -0.09 11.97 16 9 O -0.57 -16.11 16.76 5.31 0.09 -16.02 16 10 N -0.40 -10.07 2.91 -108.75 -0.32 -10.39 16 11 C -0.31 -8.42 8.62 -15.02 -0.13 -8.54 16 12 H 0.10 2.69 7.60 -52.49 -0.40 2.29 16 13 C 0.04 1.12 5.05 -17.44 -0.09 1.03 16 14 N -0.86 -21.86 10.47 55.50 0.58 -21.28 16 15 Si 0.93 20.20 29.56 -169.99 -5.02 15.18 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.12 2.74 2.18 -67.93 -0.15 2.59 16 20 C -0.13 -2.73 8.51 -26.73 -0.23 -2.95 16 21 C -0.22 -4.10 8.35 -26.73 -0.22 -4.32 16 22 C -0.17 -3.01 9.76 -39.01 -0.38 -3.40 16 23 C 0.12 1.85 11.16 -17.62 -0.20 1.65 16 24 N -0.54 -8.65 8.61 -13.39 -0.12 -8.77 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 1.11 6.98 -51.93 -0.36 0.75 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.15 2.92 5.38 -52.49 -0.28 2.64 16 33 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.11 2.44 6.54 -51.93 -0.34 2.10 16 35 H 0.09 1.97 7.94 -51.93 -0.41 1.56 16 36 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 37 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -29.69 334.40 -7.29 -36.98 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.58 Total: 6.63 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.78 Total: -2.43 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.15 Total: -40.44 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.09 Total: -20.96 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.69 -7.29 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268449838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.752 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds