Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47148 * 2 1 4 4 O 1.42903 * 109.47065 * 119.99887 * 2 1 3 5 5 C 1.35683 * 116.99714 * 90.00153 * 4 2 1 6 6 C 1.38846 * 119.61587 * 180.02562 * 5 4 2 7 7 C 1.39672 * 118.93673 * 180.02562 * 6 5 4 8 8 C 1.48008 * 120.89926 * 179.97438 * 7 6 5 9 9 O 1.21559 * 119.99903 * 219.37488 * 8 7 6 10 10 N 1.34779 * 119.99979 * 39.37250 * 8 7 6 11 11 C 1.36793 * 120.00029 * 176.94237 * 10 8 7 12 12 H 1.07998 * 119.99898 * 328.09800 * 11 10 8 13 13 C 1.39103 * 120.00010 * 148.09762 * 11 10 8 14 14 N 1.31332 * 119.99985 * 359.82842 * 13 11 10 15 15 Si 1.86799 * 119.99967 * 179.82804 * 13 11 10 16 16 H 1.48497 * 109.47014 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47061 * 299.99988 * 15 13 11 18 18 H 1.48503 * 109.47278 * 60.00300 * 15 13 11 19 19 C 1.46497 * 119.99826 * 356.94558 * 10 8 7 20 20 C 1.52998 * 117.49764 * 134.05727 * 19 10 8 21 21 C 1.53002 * 60.00089 * 252.50770 * 20 19 10 22 22 C 1.40060 * 118.20128 * 0.24340 * 7 6 5 23 23 C 1.37932 * 119.12594 * 359.53052 * 22 7 6 24 24 N 1.31938 * 120.98296 * 0.48304 * 23 22 7 25 25 H 1.09000 * 109.46911 * 60.00135 * 1 2 3 26 26 H 1.09001 * 109.46902 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47017 * 300.00482 * 1 2 3 28 28 H 1.09001 * 109.46751 * 240.00167 * 2 1 3 29 29 H 1.08996 * 109.47390 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46747 * 300.00149 * 3 2 1 31 31 H 1.08997 * 109.47180 * 59.99477 * 3 2 1 32 32 H 1.08002 * 120.53507 * 359.97271 * 6 5 4 33 33 H 0.96992 * 120.00047 * 175.01440 * 14 13 11 34 34 H 1.08996 * 115.55179 * 279.76437 * 19 10 8 35 35 H 1.08997 * 117.49983 * 359.97438 * 20 19 10 36 36 H 1.09008 * 117.49744 * 145.02182 * 20 19 10 37 37 H 1.09000 * 117.49952 * 252.51191 * 21 20 19 38 38 H 1.08996 * 117.51588 * 107.48459 * 21 20 19 39 39 H 1.07997 * 120.43379 * 179.74619 * 22 7 6 40 40 H 1.07997 * 119.51092 * 180.22959 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2117 -2.0110 1.0652 6 6 2.6735 -2.7198 2.1662 7 6 2.8805 -4.0959 2.0457 8 6 3.3723 -4.8937 3.1912 9 8 4.1826 -5.7816 3.0102 10 7 2.9217 -4.6358 4.4350 11 6 3.3282 -5.4132 5.4846 12 1 3.5482 -6.4589 5.3286 13 6 3.4581 -4.8568 6.7529 14 7 3.1938 -3.5843 6.9419 15 14 4.0085 -5.9195 8.1871 16 1 4.0678 -5.0944 9.4204 17 1 3.0418 -7.0300 8.3799 18 1 5.3542 -6.4786 7.9012 19 6 1.9967 -3.5229 4.6628 20 6 0.7744 -3.7893 5.5436 21 6 0.6059 -3.6199 4.0324 22 6 2.6155 -4.6993 0.8098 23 6 2.1544 -3.9217 -0.2319 24 7 1.9705 -2.6239 -0.0810 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 2.8704 -2.2152 3.1005 33 1 3.2140 -3.2126 7.8375 34 1 2.4545 -2.5356 4.7221 35 1 0.6583 -4.7927 5.9533 36 1 0.4280 -2.9771 6.1828 37 1 0.1488 -2.6963 3.6774 38 1 0.3793 -4.5115 3.4479 39 1 2.7669 -5.7601 0.6754 40 1 1.9445 -4.3812 -1.1864 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268449838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -14.683504 kcal Electronic energy + Delta-G solvation = -23651.474001 eV Core-core repulsion = 20239.566884 eV Total energy + Delta-G solvation = -3411.907118 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87052 -40.56382 -38.95693 -37.98099 -35.04260 -34.18388 -33.66913 -32.90703 -31.07657 -28.10197 -27.58943 -25.53520 -24.32974 -23.52284 -22.96068 -22.46404 -21.04550 -19.23703 -18.86508 -17.74215 -17.52283 -17.12606 -16.89238 -16.62679 -15.94065 -15.88074 -15.47067 -15.33134 -14.92673 -14.67992 -14.46936 -14.09032 -13.83677 -13.26214 -13.20920 -13.12655 -13.00680 -12.82851 -12.78092 -12.61132 -12.29447 -12.14247 -11.84891 -11.70061 -11.67316 -11.22521 -10.95779 -10.75749 -10.67911 -10.24281 -9.72880 -9.44391 -8.31953 -6.08352 -0.10574 0.21752 1.38611 1.41887 1.49799 1.90996 2.09254 2.23123 2.76412 2.87405 3.01112 3.20453 3.33424 3.71595 3.96913 4.01489 4.07103 4.10668 4.17553 4.24809 4.32820 4.36098 4.46012 4.68237 4.75752 4.76010 4.82945 4.90140 4.93061 4.95877 5.08872 5.23852 5.26087 5.31965 5.33153 5.38601 5.43331 5.46236 6.05563 6.33233 6.43697 6.82203 7.07732 7.31863 7.89751 8.67743 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.004853 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.234941 B = 5768.071521 C = 6404.324457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.313 6.313 5 C 0.320 3.680 6 C -0.168 4.168 7 C -0.030 4.030 8 C 0.472 3.528 9 O -0.622 6.622 10 N -0.409 5.409 11 C -0.350 4.350 12 H 0.070 0.930 13 C 0.016 3.984 14 N -0.872 5.872 15 Si 0.984 3.016 16 H -0.268 1.268 17 H -0.266 1.266 18 H -0.280 1.280 19 C 0.108 3.892 20 C -0.132 4.132 21 C -0.181 4.181 22 C -0.180 4.180 23 C 0.148 3.852 24 N -0.534 5.534 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.276 0.724 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.142 0.858 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 8.858 -11.441 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.221 6.221 5 C 0.141 3.859 6 C -0.189 4.189 7 C -0.041 4.041 8 C 0.262 3.738 9 O -0.510 6.510 10 N -0.125 5.125 11 C -0.478 4.478 12 H 0.088 0.912 13 C -0.189 4.189 14 N -0.507 5.507 15 Si 0.807 3.193 16 H -0.192 1.192 17 H -0.191 1.191 18 H -0.206 1.206 19 C 0.003 3.997 20 C -0.170 4.170 21 C -0.219 4.219 22 C -0.201 4.201 23 C -0.007 4.007 24 N -0.258 5.258 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.918 9.314 -11.780 16.977 hybrid contribution 0.815 -1.234 1.679 2.237 sum -7.103 8.080 -10.101 14.757 Atomic orbital electron populations 1.22179 0.93921 1.02296 1.03573 1.22627 0.95277 0.93486 0.86991 1.21927 1.01662 0.92676 1.04103 1.86310 1.80358 1.15375 1.40081 1.19516 0.92077 0.84989 0.89275 1.21315 1.05004 0.93037 0.99583 1.20170 0.95810 0.93255 0.94832 1.18591 0.84417 0.86741 0.84002 1.90572 1.38197 1.36940 1.85282 1.43131 1.37204 1.26848 1.05308 1.19467 1.46970 0.93216 0.88158 0.91173 1.26056 0.95185 0.96918 1.00738 1.69902 1.44902 1.12195 1.23701 0.85145 0.78752 0.78275 0.77094 1.19202 1.19062 1.20585 1.21202 0.83840 0.89996 1.04615 1.22677 1.00394 1.01759 0.92158 1.23448 0.99347 1.02816 0.96307 1.22181 1.03003 1.02569 0.92361 1.22855 0.91836 0.86862 0.99195 1.67214 1.21761 1.13185 1.23683 0.88857 0.93403 0.92035 0.89732 0.92458 0.88014 0.91639 0.84682 0.91374 0.88423 0.91016 0.88194 0.87034 0.90451 0.83991 0.77801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.53 71.98 0.69 -2.37 16 2 C 0.07 1.59 3.11 30.60 0.10 1.68 16 3 C -0.15 -2.47 9.56 71.98 0.69 -1.78 16 4 O -0.31 -9.38 9.76 -90.01 -0.88 -10.26 16 5 C 0.32 10.49 7.45 84.78 0.63 11.12 16 6 C -0.17 -6.37 7.41 22.76 0.17 -6.20 16 7 C -0.03 -1.24 4.90 -19.90 -0.10 -1.33 16 8 C 0.47 24.64 7.30 86.83 0.63 25.28 16 9 O -0.62 -36.86 16.76 -3.90 -0.07 -36.93 16 10 N -0.41 -21.54 2.91 -616.23 -1.79 -23.33 16 11 C -0.35 -19.82 8.62 84.13 0.73 -19.10 16 12 H 0.07 4.21 7.60 -2.91 -0.02 4.19 16 13 C 0.02 0.85 5.05 84.98 0.43 1.28 16 14 N -0.87 -44.64 10.47 21.69 0.23 -44.41 16 15 Si 0.98 42.00 29.56 68.60 2.03 44.03 16 16 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 C 0.11 4.83 2.18 44.99 0.10 4.93 16 20 C -0.13 -5.40 8.51 30.59 0.26 -5.14 16 21 C -0.18 -6.69 8.35 30.60 0.26 -6.44 16 22 C -0.18 -6.09 9.76 22.64 0.22 -5.87 16 23 C 0.15 3.92 11.16 84.60 0.94 4.87 16 24 N -0.53 -15.55 8.61 -309.16 -2.66 -18.21 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.92 6.98 -2.39 -0.02 1.90 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.14 5.45 5.38 -2.91 -0.02 5.44 16 33 H 0.28 13.26 8.31 -92.71 -0.77 12.49 16 34 H 0.10 4.55 6.54 -2.39 -0.02 4.53 16 35 H 0.07 3.19 7.94 -2.39 -0.02 3.17 16 36 H 0.10 3.74 8.14 -2.38 -0.02 3.72 16 37 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.14 4.65 8.06 -2.91 -0.02 4.62 16 40 H 0.21 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -67.12 334.40 3.63 -63.49 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 1.04 Total: 24.68 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.74 Total: 0.94 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -4.23 Total: -85.95 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -0.94 Total: -47.19 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -67.12 3.63 -63.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268449838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.807 kcal (2) G-P(sol) polarization free energy of solvation -67.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds