Wall clock time and date at job start Tue Mar 31 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47040 * 2 1 4 4 O 1.21253 * 120.00080 * 0.02562 * 3 2 1 5 5 C 1.47187 * 119.99874 * 180.02562 * 3 2 1 6 6 C 1.39880 * 120.13975 * 359.72584 * 5 3 2 7 7 C 1.37905 * 119.96709 * 179.70001 * 6 5 3 8 8 C 1.38303 * 120.25183 * 0.57645 * 7 6 5 9 9 C 1.38990 * 120.27409 * 359.72081 * 8 7 6 10 10 N 1.39984 * 119.98349 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00201 * 213.31855 * 10 9 8 12 12 O 1.21586 * 119.99693 * 5.32301 * 11 10 9 13 13 N 1.34777 * 119.99966 * 185.31463 * 11 10 9 14 14 C 1.46503 * 119.99695 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46969 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47029 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00202 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99984 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00152 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47222 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47576 * 119.99595 * 20 18 16 23 23 H 1.48495 * 109.46977 * 239.99780 * 20 18 16 24 24 C 1.38556 * 120.02970 * 359.97438 * 9 8 7 25 25 H 1.09001 * 109.46748 * 299.99978 * 1 2 3 26 26 H 1.08996 * 109.47390 * 59.99680 * 1 2 3 27 27 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47390 * 120.00320 * 2 1 3 29 29 H 1.09001 * 109.47266 * 239.99927 * 2 1 3 30 30 H 1.08001 * 120.01589 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.87809 * 180.27327 * 7 6 5 32 32 H 1.07998 * 119.86608 * 179.73862 * 8 7 6 33 33 H 0.97005 * 119.99983 * 33.32112 * 10 9 8 34 34 H 0.97001 * 119.99773 * 0.02562 * 13 11 10 35 35 H 1.08996 * 109.47103 * 300.00341 * 14 13 11 36 36 H 1.08998 * 109.47029 * 60.00498 * 14 13 11 37 37 H 1.09006 * 109.46826 * 300.00292 * 15 14 13 38 38 H 1.08995 * 109.47366 * 59.99770 * 15 14 13 39 39 H 0.96999 * 120.00387 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.12164 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2444 2.3424 0.0005 5 6 3.4794 1.6898 -0.0006 6 6 4.3910 0.6288 0.0047 7 6 5.7460 0.8848 -0.0021 8 6 6.2089 2.1881 -0.0021 9 6 5.3123 3.2501 -0.0011 10 7 5.7874 4.5668 -0.0006 11 6 5.0991 5.5314 0.6414 12 8 4.1190 5.2427 1.3005 13 7 5.4973 6.8160 0.5530 14 6 4.7487 7.8646 1.2504 15 6 5.4053 9.2212 0.9869 16 6 4.6357 10.2996 1.7048 17 1 3.7649 10.0433 2.2901 18 6 5.0424 11.6139 1.6136 19 7 6.1024 11.9262 0.9005 20 14 4.0880 12.9509 2.5029 21 1 2.9447 12.3429 3.2298 22 1 4.9815 13.6371 3.4703 23 1 3.5785 13.9357 1.5151 24 6 3.9484 3.0061 -0.0006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 4.0337 -0.3904 0.0096 31 1 6.4486 0.0645 -0.0025 32 1 7.2714 2.3814 -0.0032 33 1 6.6122 4.7850 -0.4623 34 1 6.2791 7.0463 0.0270 35 1 3.7216 7.8815 0.8858 36 1 4.7507 7.6614 2.3213 37 1 6.4326 9.2044 1.3513 38 1 5.4030 9.4241 -0.0839 39 1 6.3888 12.8508 0.8367 40 1 3.2503 3.8302 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273206331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:52 Heat of formation + Delta-G solvation = -53.563325 kcal Electronic energy + Delta-G solvation = -21733.521827 eV Core-core repulsion = 18319.928754 eV Total energy + Delta-G solvation = -3413.593073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69964 -39.68392 -38.19895 -35.21903 -34.55953 -33.14296 -32.85573 -31.32509 -30.30928 -28.89459 -25.80935 -24.85817 -23.03053 -22.75237 -21.10012 -20.66821 -19.75777 -18.25911 -17.68695 -16.47966 -16.23805 -15.95635 -15.65564 -15.49670 -15.17484 -14.56550 -14.40856 -14.31694 -13.88522 -13.70151 -13.46110 -13.22367 -12.62147 -12.52783 -12.30814 -12.21092 -11.99028 -11.61111 -11.42143 -11.21634 -11.08203 -10.63189 -10.56448 -10.31403 -10.00705 -9.81301 -9.61018 -9.28198 -9.11563 -8.66274 -8.43141 -8.13038 -6.11100 -4.13736 0.51826 1.21531 2.26074 2.76358 3.28207 3.30999 3.35930 3.41641 3.73490 3.80372 4.35116 4.50275 4.60303 4.71274 4.82586 4.84482 4.89472 5.05519 5.24601 5.26356 5.31866 5.49020 5.57071 5.66888 5.70294 5.95414 6.07280 6.10204 6.20082 6.27903 6.33714 6.35227 6.71441 6.84913 6.87109 7.04149 7.43353 7.51889 7.58931 7.87743 8.14485 8.28690 8.75519 8.92646 9.51335 11.00613 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.002751 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.860055 B =10175.007845 C =11254.089544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 C 0.391 3.609 4 O -0.443 6.443 5 C -0.153 4.153 6 C -0.100 4.100 7 C -0.112 4.112 8 C -0.124 4.124 9 C 0.167 3.833 10 N -0.693 5.693 11 C 0.694 3.306 12 O -0.575 6.575 13 N -0.730 5.730 14 C 0.138 3.862 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.064 4.064 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.407 0.593 34 H 0.395 0.605 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 -26.410 -5.162 26.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.268 3.732 4 O -0.317 6.317 5 C -0.155 4.155 6 C -0.119 4.119 7 C -0.131 4.131 8 C -0.145 4.145 9 C 0.071 3.929 10 N -0.341 5.341 11 C 0.395 3.605 12 O -0.452 6.452 13 N -0.383 5.383 14 C 0.015 3.985 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.085 4.085 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.242 0.758 34 H 0.229 0.771 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.854 -25.873 -4.581 26.290 hybrid contribution 0.651 1.044 -0.011 1.230 sum -0.203 -24.830 -4.592 25.251 Atomic orbital electron populations 1.21607 0.93666 1.01706 1.03296 1.21969 0.98327 0.95679 1.04504 1.22537 0.87825 0.91239 0.71603 1.90566 1.58219 1.47761 1.35171 1.20391 0.95060 0.93733 1.06289 1.21310 0.92942 0.98364 0.99325 1.20849 0.95448 0.96013 1.00771 1.21123 0.99352 0.91918 1.02129 1.17442 0.92516 0.83363 0.99566 1.42768 1.28400 1.06012 1.56948 1.16098 0.83120 0.81162 0.80150 1.90950 1.27870 1.81515 1.44882 1.45583 1.33338 1.04929 1.54464 1.21695 0.95037 0.86327 0.95394 1.19337 0.96485 0.88814 0.97841 1.21078 1.12624 0.91484 1.30727 0.92108 1.24997 0.95128 0.98839 0.95360 1.69960 1.24526 1.18619 1.40243 0.86445 0.80005 0.81579 0.79483 1.19527 1.20930 1.20921 1.21554 0.94744 0.97106 0.95100 0.91996 0.92078 0.92077 0.88350 0.88381 0.85203 0.85136 0.85279 0.75750 0.77108 0.92421 0.92473 0.95912 0.95883 0.92889 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.20 37.16 0.34 -0.83 16 2 C -0.17 -1.25 5.03 -27.88 -0.14 -1.39 16 3 C 0.39 4.73 7.12 -30.68 -0.22 4.51 16 4 O -0.44 -7.21 15.97 5.58 0.09 -7.12 16 5 C -0.15 -1.84 5.87 -105.09 -0.62 -2.46 16 6 C -0.10 -0.85 9.47 -39.09 -0.37 -1.22 16 7 C -0.11 -0.89 10.02 -39.68 -0.40 -1.29 16 8 C -0.12 -1.17 9.95 -39.28 -0.39 -1.56 16 9 C 0.17 2.15 6.27 -83.74 -0.53 1.63 16 10 N -0.69 -8.96 5.35 -14.26 -0.08 -9.04 16 11 C 0.69 12.14 8.30 -86.92 -0.72 11.42 16 12 O -0.58 -12.41 14.03 5.29 0.07 -12.34 16 13 N -0.73 -12.65 5.56 -65.22 -0.36 -13.02 16 14 C 0.14 2.95 5.61 -4.04 -0.02 2.92 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 17 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 C -0.06 -0.96 8.20 -38.90 -0.32 -1.28 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.10 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.10 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.13 0.67 7.04 -52.49 -0.37 0.31 16 31 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.41 3.73 8.83 -40.82 -0.36 3.37 16 34 H 0.40 5.72 8.49 -40.82 -0.35 5.37 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.15 2.75 6.00 -52.49 -0.31 2.43 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -34.79 345.37 -8.86 -43.65 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.57 Total: 4.17 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -3.93 Total: -2.61 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.30 Total: -47.41 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.16 Total: -19.47 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.79 -8.86 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273206331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.914 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds