Wall clock time and date at job start Tue Mar 31 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47040 * 2 1 4 4 O 1.21253 * 120.00080 * 0.02562 * 3 2 1 5 5 C 1.47187 * 119.99874 * 180.02562 * 3 2 1 6 6 C 1.39880 * 120.13975 * 359.72584 * 5 3 2 7 7 C 1.37905 * 119.96709 * 179.70001 * 6 5 3 8 8 C 1.38303 * 120.25183 * 0.57645 * 7 6 5 9 9 C 1.38990 * 120.27409 * 359.72081 * 8 7 6 10 10 N 1.39984 * 119.98349 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00201 * 213.31855 * 10 9 8 12 12 O 1.21586 * 119.99693 * 5.32301 * 11 10 9 13 13 N 1.34777 * 119.99966 * 185.31463 * 11 10 9 14 14 C 1.46503 * 119.99695 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46969 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47029 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00202 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99984 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00152 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47222 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47576 * 119.99595 * 20 18 16 23 23 H 1.48495 * 109.46977 * 239.99780 * 20 18 16 24 24 C 1.38556 * 120.02970 * 359.97438 * 9 8 7 25 25 H 1.09001 * 109.46748 * 299.99978 * 1 2 3 26 26 H 1.08996 * 109.47390 * 59.99680 * 1 2 3 27 27 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47390 * 120.00320 * 2 1 3 29 29 H 1.09001 * 109.47266 * 239.99927 * 2 1 3 30 30 H 1.08001 * 120.01589 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.87809 * 180.27327 * 7 6 5 32 32 H 1.07998 * 119.86608 * 179.73862 * 8 7 6 33 33 H 0.97005 * 119.99983 * 33.32112 * 10 9 8 34 34 H 0.97001 * 119.99773 * 0.02562 * 13 11 10 35 35 H 1.08996 * 109.47103 * 300.00341 * 14 13 11 36 36 H 1.08998 * 109.47029 * 60.00498 * 14 13 11 37 37 H 1.09006 * 109.46826 * 300.00292 * 15 14 13 38 38 H 1.08995 * 109.47366 * 59.99770 * 15 14 13 39 39 H 0.96999 * 120.00387 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.12164 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2444 2.3424 0.0005 5 6 3.4794 1.6898 -0.0006 6 6 4.3910 0.6288 0.0047 7 6 5.7460 0.8848 -0.0021 8 6 6.2089 2.1881 -0.0021 9 6 5.3123 3.2501 -0.0011 10 7 5.7874 4.5668 -0.0006 11 6 5.0991 5.5314 0.6414 12 8 4.1190 5.2427 1.3005 13 7 5.4973 6.8160 0.5530 14 6 4.7487 7.8646 1.2504 15 6 5.4053 9.2212 0.9869 16 6 4.6357 10.2996 1.7048 17 1 3.7649 10.0433 2.2901 18 6 5.0424 11.6139 1.6136 19 7 6.1024 11.9262 0.9005 20 14 4.0880 12.9509 2.5029 21 1 2.9447 12.3429 3.2298 22 1 4.9815 13.6371 3.4703 23 1 3.5785 13.9357 1.5151 24 6 3.9484 3.0061 -0.0006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 4.0337 -0.3904 0.0096 31 1 6.4486 0.0645 -0.0025 32 1 7.2714 2.3814 -0.0032 33 1 6.6122 4.7850 -0.4623 34 1 6.2791 7.0463 0.0270 35 1 3.7216 7.8815 0.8858 36 1 4.7507 7.6614 2.3213 37 1 6.4326 9.2044 1.3513 38 1 5.4030 9.4241 -0.0839 39 1 6.3888 12.8508 0.8367 40 1 3.2503 3.8302 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273206331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:51 Heat of formation + Delta-G solvation = -77.900822 kcal Electronic energy + Delta-G solvation = -21734.577180 eV Core-core repulsion = 18319.928754 eV Total energy + Delta-G solvation = -3414.648426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82281 -40.77374 -39.21906 -36.78898 -35.85638 -34.88414 -33.83694 -32.13593 -31.86254 -30.20616 -26.88347 -26.49272 -24.08209 -23.62773 -22.84144 -21.96314 -20.67723 -19.59238 -18.66409 -18.46479 -17.27147 -16.99278 -16.63038 -16.52167 -16.43145 -16.40589 -15.67176 -15.46672 -15.28008 -14.90508 -14.52637 -14.31896 -14.29463 -13.62342 -13.25411 -13.14334 -12.99188 -12.90200 -12.74125 -12.54949 -12.41827 -12.31496 -12.02513 -11.72569 -11.62060 -11.45481 -11.19337 -10.71220 -10.63721 -10.16543 -9.95742 -9.13515 -8.27099 -6.37216 -0.32533 0.35173 1.38783 1.39208 1.40701 1.51854 1.57154 1.99576 2.38849 2.86849 2.96791 3.07819 3.23380 3.89845 4.00517 4.14198 4.21791 4.28722 4.33451 4.37657 4.44537 4.49471 4.56884 4.78008 4.81291 4.97478 4.99668 5.05740 5.19366 5.25738 5.30985 5.34037 5.40010 5.44464 5.50009 5.54653 5.74719 5.91518 5.98504 6.13392 6.57869 6.75448 6.93489 7.32045 7.39940 8.85028 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.002751 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.860055 B =10175.007845 C =11254.089544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.158 4.158 3 C 0.384 3.616 4 O -0.506 6.506 5 C -0.175 4.175 6 C -0.077 4.077 7 C -0.102 4.102 8 C -0.109 4.109 9 C 0.136 3.864 10 N -0.674 5.674 11 C 0.694 3.306 12 O -0.621 6.621 13 N -0.724 5.724 14 C 0.159 3.841 15 C 0.025 3.975 16 C -0.547 4.547 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.276 1.276 24 C -0.103 4.103 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.176 0.824 31 H 0.179 0.821 32 H 0.162 0.838 33 H 0.426 0.574 34 H 0.411 0.589 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.013 0.987 38 H 0.010 0.990 39 H 0.267 0.733 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -29.810 -5.283 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.266 3.734 4 O -0.385 6.385 5 C -0.177 4.177 6 C -0.096 4.096 7 C -0.120 4.120 8 C -0.129 4.129 9 C 0.041 3.959 10 N -0.323 5.323 11 C 0.394 3.606 12 O -0.501 6.501 13 N -0.378 5.378 14 C 0.035 3.965 15 C -0.013 4.013 16 C -0.586 4.586 17 H 0.075 0.925 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.790 3.210 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.202 1.202 24 C -0.124 4.124 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.193 0.807 31 H 0.196 0.804 32 H 0.179 0.821 33 H 0.265 0.735 34 H 0.247 0.753 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.998 -29.328 -4.745 29.727 hybrid contribution 0.148 1.950 -0.017 1.956 sum 1.146 -27.379 -4.763 27.813 Atomic orbital electron populations 1.21638 0.94546 1.02952 1.01410 1.22065 0.97558 0.92430 1.07404 1.23445 0.87768 0.92914 0.69316 1.90548 1.59520 1.50002 1.38400 1.20613 0.95925 0.93637 1.07502 1.21829 0.92688 0.99149 0.95914 1.21466 0.95959 0.96446 0.98141 1.21543 1.00278 0.91480 0.99638 1.17715 0.92444 0.83785 1.01979 1.42434 1.28372 1.05527 1.56001 1.16202 0.82780 0.81519 0.80059 1.90929 1.29980 1.82240 1.46984 1.45202 1.33602 1.04452 1.54566 1.21138 0.94294 0.86068 0.94999 1.19126 0.95764 0.89866 0.96495 1.21470 1.13002 0.92837 1.31256 0.92518 1.25851 0.96051 1.01129 0.96044 1.70050 1.25746 1.19444 1.41221 0.85395 0.78693 0.78529 0.78430 1.19199 1.19978 1.20158 1.21352 0.95159 0.97312 0.98599 0.94230 0.93850 0.89033 0.85305 0.84821 0.80651 0.80398 0.82086 0.73503 0.75293 0.94058 0.93579 0.96875 0.97169 0.92460 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.20 71.98 0.66 -1.60 16 2 C -0.16 -1.95 5.03 29.85 0.15 -1.80 16 3 C 0.38 9.51 7.12 28.04 0.20 9.71 16 4 O -0.51 -18.25 15.97 -2.95 -0.05 -18.29 16 5 C -0.18 -4.15 5.87 -20.17 -0.12 -4.27 16 6 C -0.08 -0.98 9.47 22.59 0.21 -0.76 16 7 C -0.10 -1.06 10.02 22.21 0.22 -0.84 16 8 C -0.11 -1.67 9.95 22.47 0.22 -1.44 16 9 C 0.14 3.46 6.27 38.10 0.24 3.70 16 10 N -0.67 -17.62 5.35 -317.29 -1.70 -19.31 16 11 C 0.69 25.54 8.30 179.05 1.49 27.02 16 12 O -0.62 -28.94 14.03 -3.99 -0.06 -29.00 16 13 N -0.72 -26.16 5.56 -478.53 -2.66 -28.82 16 14 C 0.16 7.17 5.61 86.38 0.48 7.65 16 15 C 0.03 1.28 5.09 29.85 0.15 1.43 16 16 C -0.55 -31.21 9.11 25.60 0.23 -30.98 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 18 C 0.01 0.46 5.46 84.66 0.46 0.92 16 19 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 20 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.10 -3.28 8.20 22.71 0.19 -3.09 16 25 H 0.04 0.76 8.10 -2.39 -0.02 0.75 16 26 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.13 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.13 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.18 0.61 7.04 -2.91 -0.02 0.59 16 31 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 32 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.43 7.41 8.83 -92.70 -0.82 6.59 16 34 H 0.41 12.13 8.49 -92.71 -0.79 11.34 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.27 14.69 8.31 -92.71 -0.77 13.91 16 40 H 0.10 4.04 6.00 -2.91 -0.02 4.02 16 Total: -1.00 -83.59 345.37 2.11 -81.48 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -0.54 Total: 16.09 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 4.80 Total: 5.66 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.07 Total: -102.35 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.10 Total: -47.29 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -83.59 2.11 -81.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273206331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.576 kcal (2) G-P(sol) polarization free energy of solvation -83.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds