Wall clock time and date at job start Tue Mar 31 2020 06:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47316 * 180.02562 * 17 16 14 19 19 O 1.21214 * 119.99705 * 359.97438 * 18 17 16 20 20 C 1.47556 * 120.00488 * 180.02562 * 18 17 16 21 21 C 1.39547 * 119.74313 * 179.72438 * 20 18 17 22 22 C 1.38568 * 119.03791 * 179.77184 * 21 20 18 23 23 C 1.38633 * 118.50167 * 0.49343 * 22 21 20 24 24 C 1.38661 * 119.38706 * 359.74998 * 23 22 21 25 25 N 1.31444 * 120.92983 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 31 31 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 32 32 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 33 33 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 34 34 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 35 35 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 36 36 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 37 37 H 1.07998 * 120.48306 * 0.02562 * 21 20 18 38 38 H 1.07997 * 120.74731 * 180.22383 * 22 21 20 39 39 H 1.07995 * 120.30636 * 179.72856 * 23 22 21 40 40 H 1.08001 * 119.53797 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6486 -0.4945 -5.3767 19 8 4.3558 -1.6550 -5.5685 20 6 5.4976 0.2223 -6.3474 21 6 5.9645 -0.4423 -7.4822 22 6 6.7569 0.2463 -8.3866 23 6 7.0644 1.5719 -8.1215 24 6 6.5703 2.1681 -6.9713 25 7 5.8159 1.4944 -6.1318 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7089 1.1611 3.4845 30 1 0.7376 -2.1442 -1.9996 31 1 2.4629 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4711 33 1 3.9016 -1.6021 -3.0168 34 1 2.4483 -1.0887 -3.9070 35 1 3.5409 1.0721 -4.4431 36 1 4.9938 0.5582 -3.5525 37 1 5.7086 -1.4772 -7.6551 38 1 7.1302 -0.2400 -9.2757 39 1 7.6833 2.1348 -8.8044 40 1 6.8086 3.2005 -6.7622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274816919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:22 Heat of formation + Delta-G solvation = -37.417619 kcal Electronic energy + Delta-G solvation = -22214.959150 eV Core-core repulsion = 18802.066207 eV Total energy + Delta-G solvation = -3412.892943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78355 -39.32537 -38.62010 -35.31819 -33.28408 -32.88755 -32.26192 -31.72200 -29.38947 -26.52010 -25.91425 -25.17238 -24.12076 -23.52265 -21.02188 -19.94711 -18.25798 -17.53481 -16.90342 -16.45037 -16.17667 -15.95263 -15.78931 -15.19683 -14.71576 -14.69320 -14.26165 -14.03468 -13.79081 -13.55309 -12.96182 -12.65610 -12.42899 -12.35385 -12.03802 -11.82972 -11.49487 -11.26120 -11.05236 -10.93469 -10.75694 -10.64218 -10.35131 -10.33591 -10.21644 -10.12709 -9.60264 -9.55213 -9.13125 -8.84836 -8.38572 -7.51479 -6.03543 -4.11260 0.18899 0.86547 2.07460 3.28815 3.35665 3.38375 3.48163 3.48948 3.52044 4.00103 4.22384 4.43468 4.44337 4.60887 4.66167 4.86194 4.97262 5.26740 5.27365 5.33802 5.34756 5.44420 5.65664 5.72780 5.78382 5.94442 6.06487 6.15890 6.19215 6.25278 6.44995 6.80651 6.89163 7.12220 7.15365 7.49084 7.58616 7.60511 7.76670 8.06786 8.25172 8.60539 8.87970 9.13271 9.55146 11.01778 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.002909 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.165228 B = 9623.635873 C = 9822.977217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.594 5.594 13 C 0.083 3.917 14 C 0.503 3.497 15 O -0.554 6.554 16 C -0.133 4.133 17 C -0.134 4.134 18 C 0.413 3.587 19 O -0.446 6.446 20 C 0.048 3.952 21 C -0.118 4.118 22 C -0.088 4.088 23 C -0.148 4.148 24 C 0.096 3.904 25 N -0.437 5.437 26 H 0.010 0.990 27 H 0.029 0.971 28 H 0.093 0.907 29 H 0.263 0.737 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.465 -2.034 -21.283 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.325 5.325 13 C -0.061 4.061 14 C 0.290 3.710 15 O -0.434 6.434 16 C -0.173 4.173 17 C -0.172 4.172 18 C 0.289 3.711 19 O -0.318 6.318 20 C -0.088 4.088 21 C -0.138 4.138 22 C -0.113 4.113 23 C -0.168 4.168 24 C -0.064 4.064 25 N -0.149 5.149 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.010 -1.568 -20.334 22.296 hybrid contribution 0.677 -0.889 0.015 1.118 sum 9.687 -2.458 -20.319 22.644 Atomic orbital electron populations 1.22079 0.98268 0.99352 1.00731 1.18929 0.90839 0.94576 0.80016 0.91874 1.21337 1.31713 1.12949 0.90353 0.92260 1.24900 0.95000 0.94982 0.98953 1.69887 1.36463 1.22593 1.23686 0.86498 0.79185 0.79288 0.82434 1.20646 1.19936 1.21121 1.48232 1.49022 1.11666 1.23559 1.21610 0.98908 0.83317 1.02277 1.20342 0.79245 0.87135 0.84315 1.90649 1.58539 1.17141 1.77024 1.21527 1.00940 0.99220 0.95623 1.21597 1.02181 0.99524 0.93862 1.22577 0.75963 0.86798 0.85714 1.90518 1.49218 1.17434 1.74666 1.21850 0.99463 0.91629 0.95813 1.22340 0.95970 1.01815 0.93657 1.21639 0.96130 0.94470 0.99098 1.22474 0.99860 0.95840 0.98662 1.22949 0.93049 1.00322 0.90108 1.67725 1.10359 1.06880 1.29935 0.97054 0.95209 0.88899 0.92728 0.93926 0.92623 0.90194 0.88984 0.89141 0.87128 0.87040 0.83646 0.84178 0.84201 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.97 37.16 0.33 -3.24 16 2 C 0.26 6.71 2.64 -69.09 -0.18 6.53 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.52 -14.43 7.99 -34.44 -0.28 -14.70 16 5 H 0.06 1.60 7.33 -52.49 -0.38 1.22 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.59 -13.04 2.75 -175.26 -0.48 -13.53 16 13 C 0.08 1.45 9.24 59.85 0.55 2.00 16 14 C 0.50 10.60 7.67 -10.99 -0.08 10.52 16 15 O -0.55 -13.70 15.31 5.56 0.09 -13.62 16 16 C -0.13 -2.10 3.54 -27.89 -0.10 -2.20 16 17 C -0.13 -1.95 4.47 -27.89 -0.12 -2.08 16 18 C 0.41 5.47 7.13 -30.51 -0.22 5.25 16 19 O -0.45 -6.45 15.95 5.61 0.09 -6.36 16 20 C 0.05 0.57 6.73 -83.12 -0.56 0.01 16 21 C -0.12 -1.10 9.64 -38.97 -0.38 -1.48 16 22 C -0.09 -0.60 10.17 -39.31 -0.40 -1.00 16 23 C -0.15 -0.94 10.12 -39.28 -0.40 -1.34 16 24 C 0.10 0.80 11.18 -17.56 -0.20 0.61 16 25 N -0.44 -5.12 9.79 -9.88 -0.10 -5.21 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.82 6.44 -51.92 -0.33 0.48 16 32 H 0.08 1.48 7.02 -51.93 -0.36 1.11 16 33 H 0.09 1.37 7.36 -51.93 -0.38 0.98 16 34 H 0.09 1.30 8.06 -51.93 -0.42 0.89 16 35 H 0.11 1.64 8.10 -51.93 -0.42 1.22 16 36 H 0.11 1.69 8.10 -51.93 -0.42 1.27 16 37 H 0.15 1.24 7.64 -52.49 -0.40 0.83 16 38 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -33.36 340.22 -7.24 -40.60 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.45 Total: 1.01 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.12 Total: 0.56 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.05 Total: -43.60 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.17 Total: -19.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.36 -7.24 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274816919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.181 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds