Wall clock time and date at job start Tue Mar 31 2020 06:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47316 * 180.02562 * 17 16 14 19 19 O 1.21214 * 119.99705 * 359.97438 * 18 17 16 20 20 C 1.47556 * 120.00488 * 180.02562 * 18 17 16 21 21 C 1.39547 * 119.74313 * 179.72438 * 20 18 17 22 22 C 1.38568 * 119.03791 * 179.77184 * 21 20 18 23 23 C 1.38633 * 118.50167 * 0.49343 * 22 21 20 24 24 C 1.38661 * 119.38706 * 359.74998 * 23 22 21 25 25 N 1.31444 * 120.92983 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 31 31 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 32 32 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 33 33 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 34 34 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 35 35 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 36 36 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 37 37 H 1.07998 * 120.48306 * 0.02562 * 21 20 18 38 38 H 1.07997 * 120.74731 * 180.22383 * 22 21 20 39 39 H 1.07995 * 120.30636 * 179.72856 * 23 22 21 40 40 H 1.08001 * 119.53797 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6486 -0.4945 -5.3767 19 8 4.3558 -1.6550 -5.5685 20 6 5.4976 0.2223 -6.3474 21 6 5.9645 -0.4423 -7.4822 22 6 6.7569 0.2463 -8.3866 23 6 7.0644 1.5719 -8.1215 24 6 6.5703 2.1681 -6.9713 25 7 5.8159 1.4944 -6.1318 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7089 1.1611 3.4845 30 1 0.7376 -2.1442 -1.9996 31 1 2.4629 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4711 33 1 3.9016 -1.6021 -3.0168 34 1 2.4483 -1.0887 -3.9070 35 1 3.5409 1.0721 -4.4431 36 1 4.9938 0.5582 -3.5525 37 1 5.7086 -1.4772 -7.6551 38 1 7.1302 -0.2400 -9.2757 39 1 7.6833 2.1348 -8.8044 40 1 6.8086 3.2005 -6.7622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274816919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:21 Heat of formation + Delta-G solvation = -58.591101 kcal Electronic energy + Delta-G solvation = -22215.877301 eV Core-core repulsion = 18802.066207 eV Total energy + Delta-G solvation = -3413.811094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60574 -40.75147 -39.78381 -37.17392 -34.86531 -34.14693 -33.36753 -32.46701 -31.26994 -27.75701 -27.40474 -27.24396 -25.00336 -24.30220 -22.69115 -21.02490 -19.86154 -18.66892 -18.36144 -17.89957 -17.28611 -17.08238 -16.98342 -16.71253 -16.04254 -15.99295 -15.39019 -15.31030 -14.85921 -14.52853 -14.26557 -14.08902 -14.04386 -13.56237 -13.54079 -13.20362 -12.96418 -12.91403 -12.71653 -12.62921 -12.59829 -12.21669 -12.15709 -12.11219 -11.27222 -11.17927 -10.95183 -10.67253 -10.47175 -10.37605 -10.21071 -9.31548 -8.14359 -6.30925 -0.55098 0.27164 1.20130 1.41117 1.42802 1.52840 1.81202 2.27026 2.45314 2.78434 2.83232 3.13351 3.41111 3.68176 3.96477 3.98530 4.04593 4.09684 4.10814 4.22537 4.43746 4.52865 4.66182 4.74174 4.75851 4.77335 4.85520 4.91049 5.01718 5.04631 5.08790 5.09527 5.15305 5.48125 5.60632 5.64700 5.68017 6.04662 6.17117 6.18882 6.77053 6.84146 6.88986 7.32172 7.49039 8.90172 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.002909 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.165228 B = 9623.635873 C = 9822.977217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.010 0.990 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.271 1.271 11 H -0.285 1.285 12 N -0.602 5.602 13 C 0.079 3.921 14 C 0.494 3.506 15 O -0.601 6.601 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.422 3.578 19 O -0.463 6.463 20 C 0.016 3.984 21 C -0.121 4.121 22 C -0.084 4.084 23 C -0.130 4.130 24 C 0.081 3.919 25 N -0.474 5.474 26 H 0.019 0.981 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.265 0.735 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.150 0.850 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.809 -3.579 -23.370 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.028 0.972 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.196 1.196 11 H -0.211 1.211 12 N -0.333 5.333 13 C -0.063 4.063 14 C 0.283 3.717 15 O -0.483 6.483 16 C -0.156 4.156 17 C -0.168 4.168 18 C 0.300 3.700 19 O -0.336 6.336 20 C -0.119 4.119 21 C -0.141 4.141 22 C -0.110 4.110 23 C -0.149 4.149 24 C -0.079 4.079 25 N -0.186 5.186 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.168 0.832 38 H 0.194 0.806 39 H 0.197 0.803 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 10.344 -3.153 -22.442 24.912 hybrid contribution 0.323 -0.307 0.566 0.720 sum 10.667 -3.461 -21.877 24.584 Atomic orbital electron populations 1.21866 0.97186 1.00058 0.99895 1.18543 0.91626 0.92297 0.81776 0.97245 1.21590 1.31905 1.13065 0.91194 0.92106 1.25759 0.95094 0.95646 1.02065 1.70030 1.37371 1.23872 1.24423 0.85435 0.78838 0.78240 0.78368 1.19229 1.19562 1.21083 1.48265 1.49102 1.13423 1.22484 1.21850 1.01258 0.80604 1.02593 1.21259 0.78308 0.86793 0.85344 1.90621 1.60037 1.19449 1.78229 1.21453 1.01858 0.99110 0.93190 1.21490 1.01458 0.99256 0.94548 1.22397 0.75813 0.86463 0.85331 1.90496 1.50218 1.17854 1.75077 1.21588 1.01258 0.92202 0.96816 1.22499 0.96127 1.02163 0.93304 1.22091 0.94823 0.94637 0.99428 1.22918 0.98382 0.95758 0.97850 1.23463 0.92627 1.01260 0.90572 1.67638 1.11942 1.07264 1.31750 0.96191 0.93526 0.91381 0.92630 0.91641 0.89388 0.91205 0.87381 0.87032 0.88031 0.88325 0.83211 0.80623 0.80274 0.79800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.97 71.98 0.65 -5.92 16 2 C 0.26 14.01 2.64 44.24 0.12 14.12 16 3 H 0.01 0.61 6.90 -2.39 -0.02 0.60 16 4 C -0.54 -30.10 7.99 25.60 0.20 -29.90 16 5 H 0.06 3.30 7.33 -2.91 -0.02 3.27 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.77 16 8 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 12 N -0.60 -26.66 2.75 -826.80 -2.28 -28.93 16 13 C 0.08 2.64 9.24 127.77 1.18 3.82 16 14 C 0.49 21.25 7.67 87.66 0.67 21.93 16 15 O -0.60 -31.29 15.31 -3.03 -0.05 -31.33 16 16 C -0.12 -3.62 3.54 29.85 0.11 -3.51 16 17 C -0.13 -3.87 4.47 29.84 0.13 -3.74 16 18 C 0.42 11.19 7.13 28.15 0.20 11.39 16 19 O -0.46 -13.04 15.95 -2.82 -0.05 -13.08 16 20 C 0.02 0.37 6.73 41.76 0.28 0.65 16 21 C -0.12 -2.06 9.64 22.66 0.22 -1.84 16 22 C -0.08 -0.86 10.17 22.44 0.23 -0.63 16 23 C -0.13 -1.18 10.12 22.47 0.23 -0.95 16 24 C 0.08 1.22 11.18 84.85 0.95 2.17 16 25 N -0.47 -11.02 9.79 -185.16 -1.81 -12.83 16 26 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.05 2.11 7.67 -2.39 -0.02 2.09 16 28 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 29 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 2.35 6.44 -2.38 -0.02 2.33 16 32 H 0.07 2.48 7.02 -2.39 -0.02 2.46 16 33 H 0.11 3.04 7.36 -2.39 -0.02 3.02 16 34 H 0.11 3.03 8.06 -2.39 -0.02 3.01 16 35 H 0.10 3.19 8.10 -2.39 -0.02 3.17 16 36 H 0.10 3.17 8.10 -2.39 -0.02 3.15 16 37 H 0.15 2.32 7.64 -2.91 -0.02 2.30 16 38 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 40 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -76.01 340.22 4.74 -71.27 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.04 Total: 13.99 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.61 Total: 8.80 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -3.85 Total: -95.53 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.09 Total: -44.42 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -76.01 4.74 -71.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274816919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.679 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds