Wall clock time and date at job start Tue Mar 31 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50702 * 109.47075 * 120.00214 * 2 1 3 5 5 H 1.08002 * 120.00367 * 120.00351 * 4 2 1 6 6 C 1.37872 * 119.99824 * 299.99674 * 4 2 1 7 7 N 1.31516 * 120.00220 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46789 * 60.00433 * 8 6 4 10 10 H 1.48503 * 109.47166 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47028 * 300.00509 * 8 6 4 12 12 N 1.46496 * 109.47338 * 240.00091 * 2 1 3 13 13 C 1.46505 * 119.99896 * 300.00058 * 12 2 1 14 14 C 1.34777 * 120.00271 * 119.99594 * 12 2 1 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 12 2 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 12 18 18 C 1.38352 * 119.85535 * 269.73039 * 17 16 14 19 19 C 1.37957 * 120.14512 * 179.72611 * 18 17 16 20 20 C 1.39580 * 119.85343 * 0.54518 * 19 18 17 21 21 C 1.47843 * 120.14353 * 179.70877 * 20 19 18 22 22 N 1.34767 * 120.00348 * 0.02562 * 21 20 19 23 23 O 1.21553 * 119.99762 * 180.02562 * 21 20 19 24 24 C 1.39577 * 119.70869 * 359.72546 * 20 19 18 25 25 C 1.37959 * 119.85188 * 359.97438 * 24 20 19 26 26 H 1.08998 * 109.47006 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47283 * 299.99941 * 1 2 3 28 28 H 1.08993 * 109.47110 * 60.00098 * 1 2 3 29 29 H 0.97002 * 119.99999 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47333 * 269.99341 * 13 12 2 31 31 H 1.08997 * 109.47024 * 30.00155 * 13 12 2 32 32 H 1.09000 * 109.46875 * 149.99915 * 13 12 2 33 33 H 1.09002 * 109.47152 * 60.00245 * 16 14 12 34 34 H 1.09001 * 109.46980 * 300.00345 * 16 14 12 35 35 H 1.08006 * 119.92574 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.07473 * 180.25144 * 19 18 17 37 37 H 0.97005 * 120.00200 * 0.02562 * 22 21 20 38 38 H 0.96998 * 120.00711 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.07314 * 179.97438 * 24 20 19 40 40 H 1.08002 * 119.92451 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8076 -1.1189 4.0077 10 1 1.8269 -0.4200 5.2205 11 1 1.8281 -2.5199 4.0081 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2951 -0.7458 -3.3141 17 6 4.1329 0.2012 -4.1340 18 6 3.5371 0.9772 -5.1124 19 6 4.2974 1.8502 -5.8627 20 6 5.6725 1.9414 -5.6407 21 6 6.4944 2.8702 -6.4454 22 7 5.9162 3.6315 -7.3954 23 8 7.6917 2.9472 -6.2502 24 6 6.2681 1.1517 -4.6560 25 6 5.4953 0.2872 -3.9085 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7082 1.1608 3.4844 30 1 2.4158 -2.7377 -0.9717 31 1 0.6905 -2.3002 -0.9847 32 1 1.6239 -2.2852 -2.5002 33 1 2.4471 -1.0880 -3.9073 34 1 3.9005 -1.6024 -3.0177 35 1 2.4738 0.9021 -5.2864 36 1 3.8305 2.4584 -6.6234 37 1 4.9607 3.5704 -7.5509 38 1 6.4555 4.2406 -7.9236 39 1 7.3316 1.2172 -4.4796 40 1 5.9550 -0.3247 -3.1465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277335800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:01 Heat of formation + Delta-G solvation = -50.827440 kcal Electronic energy + Delta-G solvation = -22455.240179 eV Core-core repulsion = 19041.765743 eV Total energy + Delta-G solvation = -3413.474436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26021 -39.27439 -38.04161 -35.35675 -34.08446 -33.06455 -32.41568 -30.93163 -29.68079 -27.62636 -26.12118 -25.22293 -23.40169 -22.70061 -21.19643 -20.32003 -18.45577 -18.19207 -17.00812 -16.65367 -16.29976 -15.54329 -15.35954 -15.07644 -15.00789 -14.84490 -14.27411 -14.19416 -13.63721 -13.30263 -13.01368 -12.64244 -12.60646 -12.27492 -11.86893 -11.74039 -11.53398 -11.39364 -11.07830 -11.02180 -10.83166 -10.71186 -10.27786 -10.20736 -10.17711 -9.93182 -9.24641 -9.10726 -8.98599 -8.65699 -8.43582 -7.61752 -6.08599 -4.16886 0.79218 1.38578 2.76439 3.26769 3.31304 3.32401 3.32859 3.36880 3.73934 4.06972 4.39053 4.60134 4.68429 4.81969 4.93436 5.18884 5.23369 5.27320 5.33699 5.52372 5.62084 5.66623 5.84213 5.97684 6.02948 6.20004 6.26104 6.29216 6.54612 6.57105 6.73308 6.78819 6.86091 7.03110 7.11930 7.40283 7.49991 7.69690 7.99448 8.06603 8.17864 8.50160 8.81473 9.02611 9.49847 10.96659 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.003252 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.686270 B = 8608.479839 C = 8901.818070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.085 3.915 14 C 0.505 3.495 15 O -0.545 6.545 16 C -0.111 4.111 17 C -0.022 4.022 18 C -0.115 4.115 19 C -0.084 4.084 20 C -0.152 4.152 21 C 0.567 3.433 22 N -0.853 5.853 23 O -0.545 6.545 24 C -0.055 4.055 25 C -0.113 4.113 26 H 0.030 0.970 27 H 0.094 0.906 28 H 0.011 0.989 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.401 0.599 38 H 0.403 0.597 39 H 0.134 0.866 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 -2.420 -18.466 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.325 5.325 13 C -0.059 4.059 14 C 0.291 3.709 15 O -0.423 6.423 16 C -0.151 4.151 17 C -0.023 4.023 18 C -0.134 4.134 19 C -0.103 4.103 20 C -0.155 4.155 21 C 0.354 3.646 22 N -0.417 5.417 23 O -0.423 6.423 24 C -0.074 4.074 25 C -0.131 4.131 26 H 0.049 0.951 27 H 0.112 0.888 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.230 0.770 38 H 0.234 0.766 39 H 0.152 0.848 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.461 -1.764 -17.927 18.343 hybrid contribution -0.120 -0.342 0.668 0.760 sum 3.341 -2.106 -17.259 17.705 Atomic orbital electron populations 1.22098 0.98278 0.99334 1.00850 1.18929 0.90801 0.94519 0.79922 0.91913 1.21282 1.31916 1.13008 0.90327 0.92348 1.24894 0.94937 0.94966 0.98975 1.69866 1.36289 1.22596 1.23888 0.86555 0.79282 0.79547 0.81998 1.20217 1.21162 1.20240 1.48251 1.49022 1.11667 1.23605 1.21579 1.01746 0.83244 0.99312 1.20154 0.79473 0.87187 0.84088 1.90687 1.57925 1.16975 1.76696 1.20870 1.00231 0.98300 0.95687 1.19657 0.93670 0.95253 0.93729 1.20914 0.99875 0.96406 0.96156 1.21141 0.92516 0.97701 0.98919 1.19769 0.93884 1.01108 1.00708 1.18347 0.87148 0.79770 0.79348 1.43753 1.13259 1.45053 1.39662 1.90801 1.15142 1.67935 1.68375 1.21194 1.00519 0.92989 0.92696 1.21032 0.93301 0.99469 0.99323 0.95099 0.88794 0.97013 0.92611 0.93235 0.90819 0.92918 0.88242 0.88128 0.85486 0.85876 0.76951 0.76642 0.84769 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 2 C 0.26 6.49 2.64 -69.08 -0.18 6.31 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -14.10 8.37 -34.44 -0.29 -14.39 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.59 -12.13 2.75 -175.26 -0.48 -12.61 16 13 C 0.09 1.33 9.48 59.85 0.57 1.89 16 14 C 0.50 9.88 7.67 -10.98 -0.08 9.80 16 15 O -0.54 -13.11 15.36 5.56 0.09 -13.02 16 16 C -0.11 -1.49 4.38 -29.03 -0.13 -1.62 16 17 C -0.02 -0.31 4.38 -104.53 -0.46 -0.76 16 18 C -0.12 -1.40 9.68 -39.64 -0.38 -1.79 16 19 C -0.08 -0.91 9.54 -39.18 -0.37 -1.29 16 20 C -0.15 -1.92 5.87 -104.97 -0.62 -2.54 16 21 C 0.57 7.09 8.05 -12.33 -0.10 6.99 16 22 N -0.85 -6.63 8.82 30.53 0.27 -6.36 16 23 O -0.54 -8.84 17.18 5.32 0.09 -8.75 16 24 C -0.06 -0.75 9.60 -39.18 -0.38 -1.13 16 25 C -0.11 -1.55 9.68 -39.64 -0.38 -1.94 16 26 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.18 6.43 -51.93 -0.33 0.84 16 32 H 0.05 0.61 6.44 -51.93 -0.33 0.27 16 33 H 0.10 1.06 7.34 -51.93 -0.38 0.68 16 34 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.12 0.87 6.41 -52.48 -0.34 0.53 16 37 H 0.40 2.02 6.86 -40.82 -0.28 1.74 16 38 H 0.40 2.51 8.93 -40.82 -0.36 2.14 16 39 H 0.13 1.77 7.65 -52.49 -0.40 1.37 16 40 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -34.88 335.97 -7.03 -41.91 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.10 Total: 4.18 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.57 Total: -1.91 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.41 Total: -43.40 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.18 Total: -21.77 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.88 -7.03 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277335800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.918 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds