Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50702 * 109.47075 * 120.00214 * 2 1 3 5 5 H 1.08002 * 120.00367 * 120.00351 * 4 2 1 6 6 C 1.37872 * 119.99824 * 299.99674 * 4 2 1 7 7 N 1.31516 * 120.00220 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46789 * 60.00433 * 8 6 4 10 10 H 1.48503 * 109.47166 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47028 * 300.00509 * 8 6 4 12 12 N 1.46496 * 109.47338 * 240.00091 * 2 1 3 13 13 C 1.46505 * 119.99896 * 300.00058 * 12 2 1 14 14 C 1.34777 * 120.00271 * 119.99594 * 12 2 1 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 12 2 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 12 18 18 C 1.38352 * 119.85535 * 269.73039 * 17 16 14 19 19 C 1.37957 * 120.14512 * 179.72611 * 18 17 16 20 20 C 1.39580 * 119.85343 * 0.54518 * 19 18 17 21 21 C 1.47843 * 120.14353 * 179.70877 * 20 19 18 22 22 N 1.34767 * 120.00348 * 0.02562 * 21 20 19 23 23 O 1.21553 * 119.99762 * 180.02562 * 21 20 19 24 24 C 1.39577 * 119.70869 * 359.72546 * 20 19 18 25 25 C 1.37959 * 119.85188 * 359.97438 * 24 20 19 26 26 H 1.08998 * 109.47006 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47283 * 299.99941 * 1 2 3 28 28 H 1.08993 * 109.47110 * 60.00098 * 1 2 3 29 29 H 0.97002 * 119.99999 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47333 * 269.99341 * 13 12 2 31 31 H 1.08997 * 109.47024 * 30.00155 * 13 12 2 32 32 H 1.09000 * 109.46875 * 149.99915 * 13 12 2 33 33 H 1.09002 * 109.47152 * 60.00245 * 16 14 12 34 34 H 1.09001 * 109.46980 * 300.00345 * 16 14 12 35 35 H 1.08006 * 119.92574 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.07473 * 180.25144 * 19 18 17 37 37 H 0.97005 * 120.00200 * 0.02562 * 22 21 20 38 38 H 0.96998 * 120.00711 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.07314 * 179.97438 * 24 20 19 40 40 H 1.08002 * 119.92451 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8076 -1.1189 4.0077 10 1 1.8269 -0.4200 5.2205 11 1 1.8281 -2.5199 4.0081 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2951 -0.7458 -3.3141 17 6 4.1329 0.2012 -4.1340 18 6 3.5371 0.9772 -5.1124 19 6 4.2974 1.8502 -5.8627 20 6 5.6725 1.9414 -5.6407 21 6 6.4944 2.8702 -6.4454 22 7 5.9162 3.6315 -7.3954 23 8 7.6917 2.9472 -6.2502 24 6 6.2681 1.1517 -4.6560 25 6 5.4953 0.2872 -3.9085 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7082 1.1608 3.4844 30 1 2.4158 -2.7377 -0.9717 31 1 0.6905 -2.3002 -0.9847 32 1 1.6239 -2.2852 -2.5002 33 1 2.4471 -1.0880 -3.9073 34 1 3.9005 -1.6024 -3.0177 35 1 2.4738 0.9021 -5.2864 36 1 3.8305 2.4584 -6.6234 37 1 4.9607 3.5704 -7.5509 38 1 6.4555 4.2406 -7.9236 39 1 7.3316 1.2172 -4.4796 40 1 5.9550 -0.3247 -3.1465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277335800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = -76.001431 kcal Electronic energy + Delta-G solvation = -22456.331805 eV Core-core repulsion = 19041.765743 eV Total energy + Delta-G solvation = -3414.566062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30152 -40.62730 -39.15283 -37.07324 -35.02437 -34.80673 -33.62658 -31.86661 -31.41988 -28.79235 -27.52412 -27.24658 -24.53401 -23.64148 -22.75635 -21.38003 -19.88379 -19.15501 -18.49709 -17.89377 -17.87260 -17.09895 -16.51722 -16.45130 -16.05040 -15.86123 -15.76870 -15.49655 -14.72119 -14.59646 -14.32446 -14.18716 -13.99312 -13.48991 -13.31548 -13.12621 -12.94336 -12.88071 -12.68518 -12.55482 -12.47964 -12.15524 -12.11781 -11.96292 -11.22899 -11.16725 -10.77528 -10.69041 -10.47839 -9.93184 -9.72497 -9.27758 -8.13927 -6.30571 -0.18973 0.43842 1.41142 1.43522 1.50638 1.77396 1.87413 2.35538 2.51076 2.54929 2.92657 3.13890 3.64431 3.80676 3.91745 3.98201 4.03781 4.31005 4.41503 4.51411 4.61831 4.65921 4.75525 4.83466 4.89257 4.91365 5.04922 5.08264 5.12429 5.26133 5.35196 5.48665 5.58245 5.65971 5.69850 5.83468 5.92776 6.06793 6.18416 6.38502 6.78275 6.89595 7.25668 7.34801 7.53764 8.89858 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.003252 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.686270 B = 8608.479839 C = 8901.818070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.006 0.994 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.603 5.603 13 C 0.080 3.920 14 C 0.496 3.504 15 O -0.601 6.601 16 C -0.095 4.095 17 C -0.041 4.041 18 C -0.121 4.121 19 C -0.075 4.075 20 C -0.162 4.162 21 C 0.564 3.436 22 N -0.827 5.827 23 O -0.592 6.592 24 C -0.075 4.075 25 C -0.128 4.128 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.022 0.978 29 H 0.264 0.736 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.151 0.849 36 H 0.165 0.835 37 H 0.417 0.583 38 H 0.413 0.587 39 H 0.126 0.874 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 -4.042 -20.313 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.186 1.186 12 N -0.333 5.333 13 C -0.062 4.062 14 C 0.285 3.715 15 O -0.483 6.483 16 C -0.134 4.134 17 C -0.042 4.042 18 C -0.139 4.139 19 C -0.093 4.093 20 C -0.165 4.165 21 C 0.350 3.650 22 N -0.392 5.392 23 O -0.473 6.473 24 C -0.094 4.094 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.182 0.818 37 H 0.250 0.750 38 H 0.246 0.754 39 H 0.144 0.856 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.470 -3.418 -19.831 20.274 hybrid contribution 0.165 0.226 1.173 1.206 sum 2.635 -3.192 -18.658 19.112 Atomic orbital electron populations 1.21874 0.97154 1.00161 0.99942 1.18476 0.91601 0.92087 0.81862 0.97615 1.21591 1.31822 1.13041 0.91290 0.92128 1.25730 0.95128 0.95643 1.02030 1.70017 1.37376 1.23941 1.24414 0.85551 0.78373 0.79086 0.78261 1.20388 1.21034 1.18563 1.48251 1.49207 1.13516 1.22339 1.21870 1.01464 0.80191 1.02712 1.21228 0.78247 0.86741 0.85284 1.90659 1.59713 1.19751 1.78159 1.20844 1.01721 0.98018 0.92791 1.19838 0.93564 0.96203 0.94593 1.21290 1.01137 0.95870 0.95615 1.21548 0.91478 0.97214 0.99068 1.19953 0.94973 1.01042 1.00580 1.18421 0.86529 0.80086 0.79916 1.43534 1.14255 1.43524 1.37861 1.90779 1.17036 1.69547 1.69983 1.21269 1.00430 0.93948 0.93745 1.21152 0.93907 0.99894 0.99611 0.93228 0.91669 0.95908 0.92706 0.92713 0.91331 0.87921 0.84323 0.85807 0.83180 0.81758 0.75004 0.75417 0.85617 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.95 71.98 0.64 -5.62 16 2 C 0.26 13.42 2.64 44.25 0.12 13.54 16 3 H 0.01 0.37 6.90 -2.39 -0.02 0.35 16 4 C -0.54 -29.12 8.37 25.60 0.21 -28.90 16 5 H 0.06 3.16 7.65 -2.91 -0.02 3.14 16 6 C 0.01 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.15 11.32 21.45 0.24 -52.90 16 8 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 12 N -0.60 -24.03 2.75 -826.79 -2.28 -26.31 16 13 C 0.08 2.24 9.48 127.77 1.21 3.45 16 14 C 0.50 19.01 7.67 87.66 0.67 19.68 16 15 O -0.60 -29.64 15.36 -3.02 -0.05 -29.69 16 16 C -0.09 -2.26 4.38 29.10 0.13 -2.14 16 17 C -0.04 -1.06 4.38 -19.81 -0.09 -1.15 16 18 C -0.12 -2.61 9.68 22.23 0.22 -2.40 16 19 C -0.07 -1.42 9.54 22.53 0.21 -1.20 16 20 C -0.16 -3.97 5.87 -20.09 -0.12 -4.09 16 21 C 0.56 13.62 8.05 86.79 0.70 14.32 16 22 N -0.83 -10.96 8.82 -175.62 -1.55 -12.51 16 23 O -0.59 -19.50 17.18 -3.88 -0.07 -19.56 16 24 C -0.07 -2.08 9.60 22.53 0.22 -1.87 16 25 C -0.13 -3.49 9.68 22.23 0.22 -3.27 16 26 H 0.05 2.09 6.66 -2.39 -0.02 2.08 16 27 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 28 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 2.00 6.43 -2.39 -0.02 1.99 16 32 H 0.10 1.85 6.44 -2.39 -0.02 1.83 16 33 H 0.14 2.22 7.34 -2.39 -0.02 2.21 16 34 H 0.12 2.41 8.05 -2.39 -0.02 2.39 16 35 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.17 1.60 6.41 -2.91 -0.02 1.58 16 37 H 0.42 2.76 6.86 -92.70 -0.64 2.12 16 38 H 0.41 4.25 8.93 -92.71 -0.83 3.42 16 39 H 0.13 3.56 7.65 -2.91 -0.02 3.54 16 40 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -80.88 335.97 2.74 -78.14 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.38 Total: 16.20 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 4.79 Total: 1.58 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -3.58 Total: -91.72 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.11 Total: -49.25 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -80.88 2.74 -78.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277335800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.136 kcal (2) G-P(sol) polarization free energy of solvation -80.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds