Wall clock time and date at job start Tue Mar 31 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47386 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99967 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.90288 * 6 4 2 8 8 Si 1.86795 * 119.99950 * 5.17502 * 6 4 2 9 9 H 1.48493 * 109.47270 * 269.72359 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.72467 * 8 6 4 11 11 H 1.48512 * 109.47100 * 149.72403 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00134 * 2 1 3 13 13 C 1.46502 * 120.00515 * 59.99768 * 12 2 1 14 14 C 1.34782 * 119.99770 * 240.00343 * 12 2 1 15 15 O 1.21279 * 120.00159 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99848 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.46783 * 179.97438 * 16 14 12 18 18 C 1.38358 * 119.85520 * 269.72613 * 17 16 14 19 19 C 1.37956 * 120.14694 * 179.72980 * 18 17 16 20 20 C 1.39575 * 119.85126 * 0.54266 * 19 18 17 21 21 C 1.47845 * 120.14777 * 179.70649 * 20 19 18 22 22 N 1.34773 * 119.99947 * 0.02695 * 21 20 19 23 23 O 1.21556 * 120.00327 * 180.02562 * 21 20 19 24 24 C 1.39580 * 119.70867 * 359.73324 * 20 19 18 25 25 C 1.37949 * 119.85491 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.47390 * 174.90255 * 1 2 3 27 27 H 1.08998 * 109.47541 * 294.89955 * 1 2 3 28 28 H 1.08997 * 109.47518 * 54.90599 * 1 2 3 29 29 H 0.97000 * 119.99814 * 355.27029 * 7 6 4 30 30 H 1.09001 * 109.46676 * 89.99570 * 13 12 2 31 31 H 1.08990 * 109.47417 * 209.99955 * 13 12 2 32 32 H 1.08996 * 109.46736 * 330.00571 * 13 12 2 33 33 H 1.08994 * 109.47322 * 299.99846 * 16 14 12 34 34 H 1.09005 * 109.47149 * 59.99695 * 16 14 12 35 35 H 1.08006 * 119.92758 * 0.02562 * 18 17 16 36 36 H 1.08001 * 120.07977 * 180.25241 * 19 18 17 37 37 H 0.97007 * 119.99755 * 359.97438 * 22 21 20 38 38 H 0.96995 * 120.00643 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.06863 * 179.97438 * 24 20 19 40 40 H 1.08003 * 119.92761 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1460 -0.8448 -3.5570 8 14 0.9745 1.4930 -2.6418 9 1 -0.4983 1.3179 -2.7139 10 1 1.3165 2.3282 -1.4625 11 1 1.4547 2.1616 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0864 1.1254 1.8912 16 6 3.2950 -0.7458 3.3141 17 6 4.1328 0.2013 4.1340 18 6 5.4961 0.2828 3.9128 19 6 6.2679 1.1517 4.6561 20 6 5.6722 1.9415 5.6408 21 6 6.4942 2.8702 6.4456 22 7 7.8216 2.9561 6.2288 23 8 5.9727 3.5565 7.3028 24 6 4.2972 1.8502 5.8627 25 6 3.5360 0.9816 5.1083 26 1 -0.3634 -1.0236 -0.0913 27 1 -0.3634 0.4327 0.9321 28 1 -0.3634 0.5908 -0.8408 29 1 2.6357 -1.6779 -3.4731 30 1 2.4157 -2.7377 0.9716 31 1 1.6238 -2.2852 2.5001 32 1 0.6905 -2.3002 0.9847 33 1 2.4471 -1.0880 3.9073 34 1 3.9004 -1.6025 3.0178 35 1 5.9565 -0.3318 3.1533 36 1 7.3314 1.2174 4.4797 37 1 8.2377 2.4082 5.5449 38 1 8.3609 3.5651 6.7570 39 1 3.8303 2.4583 6.6235 40 1 2.4721 0.9097 5.2794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277335806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:02 Heat of formation + Delta-G solvation = -50.458465 kcal Electronic energy + Delta-G solvation = -22542.794731 eV Core-core repulsion = 19129.336294 eV Total energy + Delta-G solvation = -3413.458436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.32689 -39.40863 -38.13865 -35.55441 -34.12969 -33.10978 -32.46989 -30.99289 -30.38997 -27.83415 -26.29698 -24.77759 -23.45821 -22.76220 -21.18376 -20.32898 -18.48582 -18.24890 -17.58732 -17.05225 -16.57184 -15.74305 -15.48292 -15.16717 -14.97933 -14.87843 -14.51961 -13.79468 -13.67984 -13.37870 -13.10725 -12.88054 -12.79476 -12.37818 -12.18977 -11.91365 -11.77454 -11.59104 -11.49722 -11.31638 -11.08151 -10.56838 -10.25411 -10.07509 -9.96888 -9.75045 -9.30372 -9.04957 -8.92085 -8.74978 -8.52961 -7.84480 -6.49597 -4.19208 0.72946 1.32537 2.70816 3.19148 3.28824 3.33083 3.45609 3.57803 3.63686 3.93954 4.42048 4.53527 4.62994 4.75590 4.87538 5.06896 5.16828 5.24865 5.25816 5.46679 5.49517 5.59801 5.76068 5.88866 5.92775 6.14238 6.14929 6.21733 6.26182 6.31851 6.48040 6.49774 6.52011 6.79283 6.84926 7.07858 7.11080 7.36056 7.79460 8.02260 8.21882 8.30776 8.71726 8.89530 9.51205 10.87920 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.003467 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.924837 B = 8075.025733 C = 8379.504517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.228 3.772 3 H 0.062 0.938 4 C -0.602 4.602 5 H 0.060 0.940 6 C 0.033 3.967 7 N -0.909 5.909 8 Si 1.049 2.951 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.588 5.588 13 C 0.087 3.913 14 C 0.506 3.494 15 O -0.545 6.545 16 C -0.110 4.110 17 C -0.024 4.024 18 C -0.113 4.113 19 C -0.083 4.083 20 C -0.150 4.150 21 C 0.567 3.433 22 N -0.853 5.853 23 O -0.545 6.545 24 C -0.056 4.056 25 C -0.115 4.115 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.401 0.599 38 H 0.403 0.597 39 H 0.135 0.865 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 -0.953 17.913 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.126 3.874 3 H 0.080 0.920 4 C -0.641 4.641 5 H 0.079 0.921 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.878 3.122 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.320 5.320 13 C -0.057 4.057 14 C 0.293 3.707 15 O -0.423 6.423 16 C -0.149 4.149 17 C -0.025 4.025 18 C -0.131 4.131 19 C -0.102 4.102 20 C -0.154 4.154 21 C 0.354 3.646 22 N -0.417 5.417 23 O -0.423 6.423 24 C -0.075 4.075 25 C -0.133 4.133 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.231 0.769 38 H 0.234 0.766 39 H 0.152 0.848 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.637 1.097 17.172 18.107 hybrid contribution 1.050 -1.427 0.739 1.920 sum 6.687 -0.330 17.912 19.122 Atomic orbital electron populations 1.22410 0.99038 1.01098 0.99186 1.19395 0.90123 0.95298 0.82594 0.92005 1.22249 1.40169 1.10586 0.91055 0.92134 1.25696 0.96430 1.03368 0.91766 1.70830 1.36470 1.16786 1.30197 0.83948 0.76235 0.75811 0.76203 1.20908 1.20032 1.21385 1.47962 1.49223 1.11741 1.23026 1.21588 1.01777 0.82887 0.99465 1.20203 0.79319 0.87142 0.84068 1.90682 1.57888 1.17000 1.76737 1.20845 1.00374 0.98290 0.95432 1.19641 0.93669 0.95310 0.93878 1.20955 0.93390 0.99443 0.99349 1.21164 0.99466 0.95011 0.94528 1.19782 0.94810 1.00694 1.00073 1.18340 0.82197 0.81719 0.82354 1.43759 1.08839 1.46824 1.42261 1.90800 1.72409 1.44899 1.34195 1.21180 0.92180 0.96201 0.97925 1.20990 1.00036 0.96267 0.95972 0.92826 0.95025 0.92839 0.92287 0.93099 0.92619 0.90843 0.88086 0.88038 0.85353 0.85784 0.76900 0.76602 0.84763 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.65 37.16 0.32 -3.03 16 2 C 0.23 5.41 2.21 -69.09 -0.15 5.26 16 3 H 0.06 1.65 5.40 -51.93 -0.28 1.37 16 4 C -0.60 -16.39 8.77 -34.44 -0.30 -16.69 16 5 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 6 C 0.03 0.92 5.43 -17.82 -0.10 0.83 16 7 N -0.91 -27.41 13.70 55.43 0.76 -26.65 16 8 Si 1.05 25.52 25.28 -169.99 -4.30 21.22 16 9 H -0.28 -6.40 6.82 56.52 0.39 -6.01 16 10 H -0.27 -6.51 6.35 56.52 0.36 -6.15 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 N -0.59 -11.65 2.75 -175.27 -0.48 -12.13 16 13 C 0.09 1.33 9.43 59.85 0.56 1.89 16 14 C 0.51 9.57 7.67 -10.98 -0.08 9.49 16 15 O -0.54 -12.59 15.36 5.56 0.09 -12.51 16 16 C -0.11 -1.42 4.38 -29.03 -0.13 -1.55 16 17 C -0.02 -0.32 4.38 -104.53 -0.46 -0.78 16 18 C -0.11 -1.39 9.68 -39.64 -0.38 -1.77 16 19 C -0.08 -0.89 9.54 -39.19 -0.37 -1.27 16 20 C -0.15 -1.85 5.87 -104.97 -0.62 -2.47 16 21 C 0.57 6.90 8.05 -12.33 -0.10 6.80 16 22 N -0.85 -6.51 8.82 30.53 0.27 -6.24 16 23 O -0.54 -8.61 17.18 5.32 0.09 -8.52 16 24 C -0.06 -0.72 9.60 -39.19 -0.38 -1.10 16 25 C -0.11 -1.46 9.68 -39.64 -0.38 -1.85 16 26 H 0.05 1.06 6.88 -51.93 -0.36 0.70 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.15 4.41 -51.93 -0.23 0.92 16 29 H 0.27 7.99 8.72 -40.82 -0.36 7.63 16 30 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.06 0.62 6.44 -51.93 -0.33 0.29 16 32 H 0.07 1.14 6.53 -51.93 -0.34 0.80 16 33 H 0.10 1.04 7.34 -51.93 -0.38 0.66 16 34 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 35 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 36 H 0.12 0.89 6.41 -52.49 -0.34 0.55 16 37 H 0.40 2.02 6.86 -40.82 -0.28 1.74 16 38 H 0.40 2.45 8.93 -40.82 -0.36 2.09 16 39 H 0.13 1.66 7.65 -52.48 -0.40 1.25 16 40 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -36.10 330.42 -6.19 -42.29 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.03 Total: 3.78 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.57 Total: -6.22 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.55 Total: -45.03 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.18 Total: -21.02 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.30 Total: 21.22 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.10 -6.19 -42.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277335806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.164 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds