Wall clock time and date at job start Tue Mar 31 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47386 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99967 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.90288 * 6 4 2 8 8 Si 1.86795 * 119.99950 * 5.17502 * 6 4 2 9 9 H 1.48493 * 109.47270 * 269.72359 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.72467 * 8 6 4 11 11 H 1.48512 * 109.47100 * 149.72403 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00134 * 2 1 3 13 13 C 1.46502 * 120.00515 * 59.99768 * 12 2 1 14 14 C 1.34782 * 119.99770 * 240.00343 * 12 2 1 15 15 O 1.21279 * 120.00159 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99848 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.46783 * 179.97438 * 16 14 12 18 18 C 1.38358 * 119.85520 * 269.72613 * 17 16 14 19 19 C 1.37956 * 120.14694 * 179.72980 * 18 17 16 20 20 C 1.39575 * 119.85126 * 0.54266 * 19 18 17 21 21 C 1.47845 * 120.14777 * 179.70649 * 20 19 18 22 22 N 1.34773 * 119.99947 * 0.02695 * 21 20 19 23 23 O 1.21556 * 120.00327 * 180.02562 * 21 20 19 24 24 C 1.39580 * 119.70867 * 359.73324 * 20 19 18 25 25 C 1.37949 * 119.85491 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.47390 * 174.90255 * 1 2 3 27 27 H 1.08998 * 109.47541 * 294.89955 * 1 2 3 28 28 H 1.08997 * 109.47518 * 54.90599 * 1 2 3 29 29 H 0.97000 * 119.99814 * 355.27029 * 7 6 4 30 30 H 1.09001 * 109.46676 * 89.99570 * 13 12 2 31 31 H 1.08990 * 109.47417 * 209.99955 * 13 12 2 32 32 H 1.08996 * 109.46736 * 330.00571 * 13 12 2 33 33 H 1.08994 * 109.47322 * 299.99846 * 16 14 12 34 34 H 1.09005 * 109.47149 * 59.99695 * 16 14 12 35 35 H 1.08006 * 119.92758 * 0.02562 * 18 17 16 36 36 H 1.08001 * 120.07977 * 180.25241 * 19 18 17 37 37 H 0.97007 * 119.99755 * 359.97438 * 22 21 20 38 38 H 0.96995 * 120.00643 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.06863 * 179.97438 * 24 20 19 40 40 H 1.08003 * 119.92761 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1460 -0.8448 -3.5570 8 14 0.9745 1.4930 -2.6418 9 1 -0.4983 1.3179 -2.7139 10 1 1.3165 2.3282 -1.4625 11 1 1.4547 2.1616 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0864 1.1254 1.8912 16 6 3.2950 -0.7458 3.3141 17 6 4.1328 0.2013 4.1340 18 6 5.4961 0.2828 3.9128 19 6 6.2679 1.1517 4.6561 20 6 5.6722 1.9415 5.6408 21 6 6.4942 2.8702 6.4456 22 7 7.8216 2.9561 6.2288 23 8 5.9727 3.5565 7.3028 24 6 4.2972 1.8502 5.8627 25 6 3.5360 0.9816 5.1083 26 1 -0.3634 -1.0236 -0.0913 27 1 -0.3634 0.4327 0.9321 28 1 -0.3634 0.5908 -0.8408 29 1 2.6357 -1.6779 -3.4731 30 1 2.4157 -2.7377 0.9716 31 1 1.6238 -2.2852 2.5001 32 1 0.6905 -2.3002 0.9847 33 1 2.4471 -1.0880 3.9073 34 1 3.9004 -1.6025 3.0178 35 1 5.9565 -0.3318 3.1533 36 1 7.3314 1.2174 4.4797 37 1 8.2377 2.4082 5.5449 38 1 8.3609 3.5651 6.7570 39 1 3.8303 2.4583 6.6235 40 1 2.4721 0.9097 5.2794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277335806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:02 Heat of formation + Delta-G solvation = -77.790311 kcal Electronic energy + Delta-G solvation = -22543.979928 eV Core-core repulsion = 19129.336294 eV Total energy + Delta-G solvation = -3414.643634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35159 -40.70965 -39.19785 -37.21250 -35.04829 -34.86502 -33.73425 -32.07879 -31.88250 -28.91519 -27.65297 -26.74991 -24.56024 -23.66446 -22.67572 -21.37639 -19.98017 -19.56248 -19.17644 -18.06487 -17.91312 -17.06546 -16.70791 -16.24823 -16.08271 -15.85620 -15.73762 -15.44086 -14.84919 -14.65842 -14.51081 -14.35653 -14.19597 -13.78219 -13.49245 -13.31556 -13.24672 -13.06207 -12.81270 -12.56353 -12.39573 -11.99159 -11.87920 -11.66842 -11.24226 -11.00551 -10.79489 -10.73124 -10.67641 -9.95445 -9.76537 -9.49876 -8.69801 -6.43291 -0.21502 0.41636 1.38239 1.50874 1.66403 1.74235 1.77941 2.34646 2.40562 2.51202 2.88248 3.05693 3.60109 3.78067 3.84815 3.92505 4.02166 4.26261 4.35501 4.43486 4.50184 4.57509 4.60917 4.64368 4.68559 4.77856 4.84718 4.96985 5.02934 5.11539 5.24013 5.32619 5.38927 5.55041 5.69730 5.79983 5.81813 5.90269 6.01133 6.36038 6.54270 6.74507 7.23538 7.28904 7.41684 8.63100 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.003467 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.924837 B = 8075.025733 C = 8379.504517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.227 3.773 3 H 0.031 0.969 4 C -0.594 4.594 5 H 0.033 0.967 6 C -0.016 4.016 7 N -0.941 5.941 8 Si 1.082 2.918 9 H -0.252 1.252 10 H -0.270 1.270 11 H -0.291 1.291 12 N -0.599 5.599 13 C 0.082 3.918 14 C 0.499 3.501 15 O -0.595 6.595 16 C -0.095 4.095 17 C -0.042 4.042 18 C -0.126 4.126 19 C -0.076 4.076 20 C -0.161 4.161 21 C 0.564 3.436 22 N -0.829 5.829 23 O -0.590 6.590 24 C -0.073 4.073 25 C -0.121 4.121 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.255 0.745 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.417 0.583 38 H 0.413 0.587 39 H 0.131 0.869 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -1.468 19.463 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.123 3.877 3 H 0.049 0.951 4 C -0.633 4.633 5 H 0.052 0.948 6 C -0.215 4.215 7 N -0.577 5.577 8 Si 0.905 3.095 9 H -0.177 1.177 10 H -0.195 1.195 11 H -0.218 1.218 12 N -0.329 5.329 13 C -0.060 4.060 14 C 0.288 3.712 15 O -0.476 6.476 16 C -0.134 4.134 17 C -0.043 4.043 18 C -0.144 4.144 19 C -0.095 4.095 20 C -0.164 4.164 21 C 0.351 3.649 22 N -0.393 5.393 23 O -0.472 6.472 24 C -0.092 4.092 25 C -0.139 4.139 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.178 0.822 37 H 0.249 0.751 38 H 0.246 0.754 39 H 0.148 0.852 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.684 0.524 18.735 19.586 hybrid contribution 1.175 -1.315 0.304 1.790 sum 6.860 -0.791 19.040 20.253 Atomic orbital electron populations 1.22260 0.96559 1.01944 1.00239 1.19057 0.91955 0.93571 0.83069 0.95078 1.22444 1.38720 1.09370 0.92748 0.94820 1.26878 0.96922 1.05793 0.91872 1.70936 1.38545 1.17032 1.31218 0.83526 0.77430 0.72459 0.76047 1.17671 1.19544 1.21752 1.48032 1.49551 1.13403 1.21963 1.21839 1.01229 0.80127 1.02808 1.21217 0.78034 0.86757 0.85164 1.90655 1.59450 1.19444 1.78077 1.20835 1.01831 0.98086 0.92678 1.19809 0.94310 0.95916 0.94268 1.21255 0.93459 0.99911 0.99745 1.21505 1.01215 0.93603 0.93144 1.19958 0.94826 1.01055 1.00582 1.18421 0.83358 0.81310 0.81844 1.43566 1.07397 1.46351 1.42012 1.90778 1.73505 1.46724 1.36147 1.21308 0.92909 0.96638 0.98303 1.21164 1.00747 0.96091 0.95925 0.91781 0.92596 0.93452 0.93625 0.93699 0.87521 0.91188 0.84627 0.85619 0.84201 0.82189 0.75097 0.75414 0.85153 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 8.65 71.98 0.62 -5.47 16 2 C 0.23 10.66 2.21 44.24 0.10 10.75 16 3 H 0.03 1.67 5.40 -2.39 -0.01 1.66 16 4 C -0.59 -32.69 8.77 25.60 0.22 -32.46 16 5 H 0.03 1.98 7.74 -2.91 -0.02 1.96 16 6 C -0.02 -0.92 5.43 84.66 0.46 -0.46 16 7 N -0.94 -57.97 13.70 21.45 0.29 -57.67 16 8 Si 1.08 51.38 25.28 68.60 1.73 53.11 16 9 H -0.25 -10.67 6.82 99.48 0.68 -9.99 16 10 H -0.27 -12.53 6.35 99.48 0.63 -11.90 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 12 N -0.60 -22.76 2.75 -826.82 -2.28 -25.03 16 13 C 0.08 2.29 9.43 127.77 1.20 3.50 16 14 C 0.50 18.04 7.67 87.66 0.67 18.71 16 15 O -0.59 -27.33 15.36 -3.03 -0.05 -27.37 16 16 C -0.10 -2.16 4.38 29.10 0.13 -2.04 16 17 C -0.04 -1.03 4.38 -19.81 -0.09 -1.12 16 18 C -0.13 -2.80 9.68 22.23 0.22 -2.58 16 19 C -0.08 -1.47 9.54 22.53 0.21 -1.25 16 20 C -0.16 -3.76 5.87 -20.09 -0.12 -3.88 16 21 C 0.56 13.12 8.05 86.79 0.70 13.82 16 22 N -0.83 -10.85 8.82 -175.60 -1.55 -12.40 16 23 O -0.59 -18.62 17.18 -3.89 -0.07 -18.69 16 24 C -0.07 -1.83 9.60 22.53 0.22 -1.62 16 25 C -0.12 -2.93 9.68 22.23 0.22 -2.71 16 26 H 0.06 2.40 6.88 -2.38 -0.02 2.39 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.94 4.41 -2.39 -0.01 1.93 16 29 H 0.25 15.76 8.72 -92.71 -0.81 14.95 16 30 H 0.04 1.30 8.09 -2.39 -0.02 1.28 16 31 H 0.11 1.87 6.44 -2.39 -0.02 1.86 16 32 H 0.07 2.00 6.53 -2.39 -0.02 1.99 16 33 H 0.14 2.14 7.34 -2.39 -0.02 2.12 16 34 H 0.13 2.28 8.05 -2.38 -0.02 2.26 16 35 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.16 1.73 6.41 -2.91 -0.02 1.71 16 37 H 0.42 2.90 6.86 -92.70 -0.64 2.27 16 38 H 0.41 4.17 8.93 -92.71 -0.83 3.34 16 39 H 0.13 3.28 7.65 -2.91 -0.02 3.26 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -81.83 330.42 2.34 -79.49 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.51 Total: 15.37 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 4.76 Total: -6.81 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -3.53 Total: -95.10 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -0.11 Total: -46.06 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 1.73 Total: 53.11 kcal Total: -81.83 2.34 -79.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277335806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.698 kcal (2) G-P(sol) polarization free energy of solvation -81.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds